RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 ZNF681Q96N22 645 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 PATZ1Q9HBE1 687 aaKnown RBP8.68□□□□□ -1.02
USP54-205ENST00000424265 ACER3Q9NUN7 267 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 RAB22AQ9UL26 194 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 KNL1Q8NG31 2342 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 OR8U9P0C7N5 309 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 EDNRAP25101 427 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 LPAR6P43657 344 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 SNAI3Q3KNW1 292 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 C12orf73Q69YU5 71 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 CD200R1LQ6Q8B3 271 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 HINT2Q9BX68 163 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 NXF5Q9H1B4 397 aaKnown RBP8.68□□□□□ -1.02
USP54-205ENST00000424265 PLSCR4Q9NRQ2 329 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 OR6C3Q9NZP0 311 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 A8MVM7 634 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 CLDN34H7C241 214 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 PRSS3P35030 304 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 HINT1P49773 126 aaPredicted RBP8.68□□□□□ -1.02
USP54-205ENST00000424265 CLRN1P58418 232 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 PIN1Q13526 163 aaPredicted RBP8.68□□□□□ -1.02
USP54-205ENST00000424265 ACOT6Q3I5F7 207 aaPredicted RBP8.68□□□□□ -1.02
USP54-205ENST00000424265 SFTPA2Q8IWL1 248 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 OR13C9Q8NGT0 318 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 FGF11Q92914 225 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 SLC25A21Q9BQT8 299 aaPredicted RBP8.68□□□□□ -1.02
USP54-205ENST00000424265 SIRT3Q9NTG7 399 aaPredicted RBP8.68□□□□□ -1.02
USP54-205ENST00000424265 ALKBH4Q9NXW9 302 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 ZDBF2Q9HCK1 2354 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 IGHV3-20A0A0C4DH32 117 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 H3BQ15 152 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 TRAF3IP2O43734 574 aaPredicted RBP8.67□□□□□ -1.02
USP54-205ENST00000424265 CD5P06127 495 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 CCL11P51671 97 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 SHBQ15464 509 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 TMEM268Q5VZI3 342 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 VOPP1Q96AW1 172 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 DCBLD2Q96PD2 775 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 FBXO34Q9NWN3 711 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 NPIPA5A0A0B4J1W7 369 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 A0A1W2PNV4 684 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 H7C417 338 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 BIDP55957 195 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 ZNF141Q15928 474 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 FLVCR1-AS1Q8TAF5 88 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 GPR148Q8TDV2 347 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 TMEM106AQ96A25 262 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 C8orf44Q96CB5 159 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 HIST1H2AAQ96QV6 131 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 WDR13Q9H1Z4 485 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 TRBV5-3A0A0A0MS03 114 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 A0A1B0GW15 77 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 TBX6O95947 436 aaPredicted RBP8.67□□□□□ -1.02
USP54-205ENST00000424265 ZNF43P17038 809 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 FUT1P19526 365 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 PTGER1P34995 402 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 TPPP2P59282 170 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 INSM1Q01101 510 aaPredicted RBP8.67□□□□□ -1.02
USP54-205ENST00000424265 HIKESHIQ53FT3 197 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 FAM27D1Q5T7N8 215 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 FAM173AQ9BQD7 235 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 SLC6A13Q9NSD5 602 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 THADAQ6YHU6 1953 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 TRAV30A0A087WSZ9 112 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 KLK10O43240 276 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 NGFRP08138 427 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 FCGR2AP12318 317 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 ATF1P18846 271 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 PYCR1P32322 319 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 THBS2P35442 1172 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 CKS1BP61024 79 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 ZXDCQ2QGD7 858 aaPredicted RBP8.67□□□□□ -1.02
USP54-205ENST00000424265 WFDC8Q8IUA0 241 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 ST6GALNAC3Q8NDV1 305 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 FAM213BQ8TBF2 198 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 DVL3Q92997 716 aaPredicted RBP8.67□□□□□ -1.02
USP54-205ENST00000424265 TMEM186Q96B77 213 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 TMEM100Q9NV29 134 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 TMED7-TICAM2A0A0A6YYA0 188 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 A0A1B0GWA3 101 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 ALG1L2C9J202 215 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 H7BYZ3 331 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 RPL36A-HNRNPH2H7BZ11 118 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 JTBO76095 146 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 OR3A2P47893 321 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 ALG10Q5BKT4 473 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 TMED7Q9Y3B3 224 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 HDGFL3Q9Y3E1 203 aa8.67□□□□□ -1.02
USP54-205ENST00000424265 FXYD6P3P58550 94 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 TCTN3Q6NUS6 607 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 GBGT1Q8N5D6 347 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 ADAMTS17Q8TE56 1095 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 TMEM37Q8WXS4 190 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 MOB3AQ96BX8 217 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 MUCL1Q96DR8 90 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 PRRT1Q99946 306 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 LAMP3Q9UQV4 416 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 STRAPQ9Y3F4 350 aaKnown RBP8.66□□□□□ -1.02
USP54-205ENST00000424265 KIAA1549LQ6ZVL6 1849 aa8.66□□□□□ -1.02
USP54-205ENST00000424265 TRAV18A0A075B6X5 111 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms