RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 IL24Q13007 206 aa9.33□□□□□ -0.92
USP4-204ENST00000416417 SLC25A26Q70HW3 274 aa9.33□□□□□ -0.92
USP4-204ENST00000416417 GDPD3Q7L5L3 318 aa9.33□□□□□ -0.92
USP4-204ENST00000416417 CATSPERDQ86XM0 798 aa9.33□□□□□ -0.92
USP4-204ENST00000416417 OR52N4Q8NGI2 321 aa9.33□□□□□ -0.92
USP4-204ENST00000416417 DNAJC9Q8WXX5 260 aa9.33□□□□□ -0.92
USP4-204ENST00000416417 NRBF2Q96F24 287 aa9.33□□□□□ -0.92
USP4-204ENST00000416417 CEP19Q96LK0 163 aa9.33□□□□□ -0.92
USP4-204ENST00000416417 CDCA4Q9BXL8 241 aa9.33□□□□□ -0.92
USP4-204ENST00000416417 PKIBQ9C010 78 aa9.33□□□□□ -0.92
USP4-204ENST00000416417 RANBP3Q9H6Z4 567 aaPredicted RBP9.33□□□□□ -0.92
USP4-204ENST00000416417 PLEKHA1Q9HB21 404 aa9.33□□□□□ -0.92
USP4-204ENST00000416417 RAB18Q9NP72 206 aa9.33□□□□□ -0.92
USP4-204ENST00000416417 TCF19Q9Y242 345 aa9.33□□□□□ -0.92
USP4-204ENST00000416417 hCG_1809904A0A1W2PP81 198 aa9.32□□□□□ -0.92
USP4-204ENST00000416417 A0A1W2PPE2 198 aa9.32□□□□□ -0.92
USP4-204ENST00000416417 A0A1W2PR64 198 aa9.32□□□□□ -0.92
USP4-204ENST00000416417 A0A1W2PRV1 198 aa9.32□□□□□ -0.92
USP4-204ENST00000416417 A0A1W2PRX2 142 aa9.32□□□□□ -0.92
USP4-204ENST00000416417 G3V2T6 193 aa9.32□□□□□ -0.92
USP4-204ENST00000416417 SYT7O43581 403 aa9.32□□□□□ -0.92
USP4-204ENST00000416417 FBXO24O75426 580 aa9.32□□□□□ -0.92
USP4-204ENST00000416417 MMP23AO75900 390 aa9.32□□□□□ -0.92
USP4-204ENST00000416417 KRT8P05787 483 aa9.32□□□□□ -0.92
USP4-204ENST00000416417 ZNF728P0DKX0 622 aa9.32□□□□□ -0.92
USP4-204ENST00000416417 IGHV1-8P0DP01 117 aa9.32□□□□□ -0.92
USP4-204ENST00000416417 CCL1P22362 96 aa9.32□□□□□ -0.92
USP4-204ENST00000416417 CD24P25063 80 aa9.32□□□□□ -0.92
USP4-204ENST00000416417 KIR3DL2P43630 455 aa9.32□□□□□ -0.92
USP4-204ENST00000416417 NPBWR2P48146 333 aa9.32□□□□□ -0.92
USP4-204ENST00000416417 ACTR3P61158 418 aa9.32□□□□□ -0.92
USP4-204ENST00000416417 BLCAPP62952 87 aa9.32□□□□□ -0.92
USP4-204ENST00000416417 AANATQ16613 207 aa9.32□□□□□ -0.92
USP4-204ENST00000416417 TP53I3Q53FA7 332 aa9.32□□□□□ -0.92
USP4-204ENST00000416417 Q6ZPA2 131 aa9.32□□□□□ -0.92
USP4-204ENST00000416417 Q6ZSR3 168 aa9.32□□□□□ -0.92
USP4-204ENST00000416417 RNF144BQ7Z419 303 aa9.32□□□□□ -0.92
USP4-204ENST00000416417 EGFL6Q8IUX8 553 aa9.32□□□□□ -0.92
USP4-204ENST00000416417 PRSS35Q8N3Z0 413 aa9.32□□□□□ -0.92
USP4-204ENST00000416417 OR10H4Q8NGA5 316 aa9.32□□□□□ -0.92
USP4-204ENST00000416417 OR13D1Q8NGV5 346 aa9.32□□□□□ -0.92
USP4-204ENST00000416417 CITED2Q99967 270 aaPredicted RBP9.32□□□□□ -0.92
USP4-204ENST00000416417 ABCB10Q9NRK6 738 aa9.32□□□□□ -0.92
USP4-204ENST00000416417 RBFOX1Q9NWB1 397 aaKnown RBP9.32□□□□□ -0.92
USP4-204ENST00000416417 SLC7A11Q9UPY5 501 aa9.32□□□□□ -0.92
USP4-204ENST00000416417 FAM172BPA6NC97 362 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 METTL15A6NJ78 407 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 ADARB2-AS1A8MUL3 147 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 VGLL3A8MV65 326 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 CHRM2P08172 466 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 BCL3P20749 454 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 GABRR1P24046 479 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 POU3F4P49335 361 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 ACTA2P62736 377 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 ACTG2P63267 376 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 ACTC1P68032 377 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 ACTA1P68133 377 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 CNN3Q15417 329 aaKnown RBP9.31□□□□□ -0.92
USP4-204ENST00000416417 ATP6AP1Q15904 470 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 FBLN7Q53RD9 439 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 ARSJQ5FYB0 599 aaPredicted RBP9.31□□□□□ -0.92
USP4-204ENST00000416417 ZNF626Q68DY1 528 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 KDM4DQ6B0I6 523 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 GID4Q8IVV7 300 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 OR4S1Q8NGB4 309 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 RPS4Y2Q8TD47 263 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 BCAS4Q8TDM0 211 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 EMG1Q92979 244 aaKnown RBP9.31□□□□□ -0.92
USP4-204ENST00000416417 RFT1Q96AA3 541 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 R3HDM4Q96D70 268 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 MNTQ99583 582 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 CIB1Q99828 191 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 PRRG3Q9BZD7 231 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 RIBC2Q9H4K1 309 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 LOC107986453A0A1B0GWG9 222 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 PSPNO60542 156 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 HAND1O96004 215 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 HOXB6P17509 224 aaKnown RBP9.31□□□□□ -0.92
USP4-204ENST00000416417 ZNF85Q03923 595 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 SLC34A1Q06495 639 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 GRK1Q15835 563 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 C11orf88Q6PI97 169 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 OR8H2Q8N162 312 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 ZNF676Q8N7Q3 588 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 OR11H6Q8NGC7 330 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 NDNFQ8TB73 568 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 ITFG2Q969R8 447 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 RNF166Q96A37 237 aaPredicted RBP9.31□□□□□ -0.92
USP4-204ENST00000416417 MALSU1Q96EH3 234 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 ADAT3Q96EY9 351 aaPredicted RBP9.31□□□□□ -0.92
USP4-204ENST00000416417 BORCS8Q96FH0 119 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 SNX22Q96L94 193 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 ZNF714Q96N38 554 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 ADI1Q9BV57 179 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 ING3Q9NXR8 418 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 GNG8Q9UK08 70 aa9.31□□□□□ -0.92
USP4-204ENST00000416417 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP9.31□□□□□ -0.92
USP4-204ENST00000416417 TBL2Q9Y4P3 447 aaKnown RBP9.31□□□□□ -0.92
USP4-204ENST00000416417 IGHV2-26A0A0B4J1V2 119 aa9.3□□□□□ -0.92
USP4-204ENST00000416417 IGKV1-9A0A0C4DH69 117 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms