RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 FOXO1Q12778 655 aa12.83□□□□□ -0.36
USP4-203ENST00000415188 SNAI3Q3KNW1 292 aa12.83□□□□□ -0.36
USP4-203ENST00000415188 WIPI1Q5MNZ9 446 aaPredicted RBP12.83□□□□□ -0.36
USP4-203ENST00000415188 TMEM42Q69YG0 159 aa12.83□□□□□ -0.36
USP4-203ENST00000415188 ZNF774Q6NX45 483 aa12.83□□□□□ -0.36
USP4-203ENST00000415188 C1QL2Q7Z5L3 287 aa12.83□□□□□ -0.36
USP4-203ENST00000415188 PDZD9Q8IXQ8 264 aa12.83□□□□□ -0.36
USP4-203ENST00000415188 CSNK2A3Q8NEV1 391 aa12.83□□□□□ -0.36
USP4-203ENST00000415188 PPP1R1CQ8WVI7 109 aa12.83□□□□□ -0.36
USP4-203ENST00000415188 ST8SIA2Q92186 375 aa12.83□□□□□ -0.36
USP4-203ENST00000415188 EMG1Q92979 244 aaKnown RBP12.83□□□□□ -0.36
USP4-203ENST00000415188 REG4Q9BYZ8 158 aa12.83□□□□□ -0.36
USP4-203ENST00000415188 OR2H1Q9GZK4 316 aa12.83□□□□□ -0.36
USP4-203ENST00000415188 PPA2Q9H2U2 334 aa12.83□□□□□ -0.36
USP4-203ENST00000415188 GPR35Q9HC97 309 aa12.83□□□□□ -0.36
USP4-203ENST00000415188 PCDHB16Q9NRJ7 776 aa12.83□□□□□ -0.36
USP4-203ENST00000415188 SDHAF2Q9NX18 166 aa12.83□□□□□ -0.36
USP4-203ENST00000415188 MYO7BQ6PIF6 2116 aa12.83□□□□□ -0.36
USP4-203ENST00000415188 TRBV6-7A0A0A0MS04 114 aa12.82□□□□□ -0.36
USP4-203ENST00000415188 XRCC2O43543 280 aa12.82□□□□□ -0.36
USP4-203ENST00000415188 NEURL1O76050 574 aa12.82□□□□□ -0.36
USP4-203ENST00000415188 FARS2O95363 451 aaKnown RBP12.82□□□□□ -0.36
USP4-203ENST00000415188 CRHP06850 196 aa12.82□□□□□ -0.36
USP4-203ENST00000415188 RFPL3SP0C7P2 107 aa12.82□□□□□ -0.36
USP4-203ENST00000415188 CD46P15529 392 aa12.82□□□□□ -0.36
USP4-203ENST00000415188 ZNF32P17041 273 aa12.82□□□□□ -0.36
USP4-203ENST00000415188 ZP3P21754 424 aa12.82□□□□□ -0.36
USP4-203ENST00000415188 HTR5AP47898 357 aa12.82□□□□□ -0.36
USP4-203ENST00000415188 SNU13P55769 128 aaKnown RBP12.82□□□□□ -0.36
USP4-203ENST00000415188 ALKAL2Q6UX46 152 aa12.82□□□□□ -0.36
USP4-203ENST00000415188 GALNTL5Q7Z4T8 443 aa12.82□□□□□ -0.36
USP4-203ENST00000415188 HSD17B13Q7Z5P4 300 aaPredicted RBP12.82□□□□□ -0.36
USP4-203ENST00000415188 EIF4E3Q8N5X7 224 aaKnown RBP12.82□□□□□ -0.36
USP4-203ENST00000415188 OR5AP2Q8NGF4 316 aa12.82□□□□□ -0.36
USP4-203ENST00000415188 NPRL2Q8WTW4 380 aa12.82□□□□□ -0.36
USP4-203ENST00000415188 CASTOR1Q8WTX7 329 aa12.82□□□□□ -0.36
USP4-203ENST00000415188 C17orf50Q8WW18 174 aa12.82□□□□□ -0.36
USP4-203ENST00000415188 ROBO4Q8WZ75 1007 aa12.82□□□□□ -0.36
USP4-203ENST00000415188 PIGTQ969N2 578 aa12.82□□□□□ -0.36
USP4-203ENST00000415188 ZNF837Q96EG3 531 aaPredicted RBP12.82□□□□□ -0.36
USP4-203ENST00000415188 MRPS24Q96EL2 167 aaKnown RBP12.82□□□□□ -0.36
USP4-203ENST00000415188 C5orf66Q9H5L9 145 aa12.82□□□□□ -0.36
USP4-203ENST00000415188 DEPPQ9NTK1 212 aa12.82□□□□□ -0.36
USP4-203ENST00000415188 IL36GQ9NZH8 169 aa12.82□□□□□ -0.36
USP4-203ENST00000415188 ZNF230Q9UIE0 474 aaPredicted RBP12.82□□□□□ -0.36
USP4-203ENST00000415188 FIGNL2A6NMB9 653 aa12.81□□□□□ -0.36
USP4-203ENST00000415188 CCL21O00585 134 aa12.81□□□□□ -0.36
USP4-203ENST00000415188 CCSO14618 274 aa12.81□□□□□ -0.36
USP4-203ENST00000415188 LCATP04180 440 aa12.81□□□□□ -0.36
USP4-203ENST00000415188 DTYMKP23919 212 aa12.81□□□□□ -0.36
USP4-203ENST00000415188 MTCP1P56278 107 aa12.81□□□□□ -0.36
USP4-203ENST00000415188 CEACAM16Q2WEN9 425 aa12.81□□□□□ -0.36
USP4-203ENST00000415188 CHRFAM7AQ494W8 412 aa12.81□□□□□ -0.36
USP4-203ENST00000415188 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.81□□□□□ -0.36
USP4-203ENST00000415188 RTN4RL2Q86UN3 420 aa12.81□□□□□ -0.36
USP4-203ENST00000415188 INO80EQ8NBZ0 244 aaPredicted RBP12.81□□□□□ -0.36
USP4-203ENST00000415188 OR5D18Q8NGL1 313 aa12.81□□□□□ -0.36
USP4-203ENST00000415188 OR13G1Q8NGZ3 307 aa12.81□□□□□ -0.36
USP4-203ENST00000415188 SUN5Q8TC36 379 aa12.81□□□□□ -0.36
USP4-203ENST00000415188 TMEM230Q96A57 120 aa12.81□□□□□ -0.36
USP4-203ENST00000415188 CCDC120Q96HB5 630 aa12.81□□□□□ -0.36
USP4-203ENST00000415188 VRK1Q99986 396 aaPredicted RBP12.81□□□□□ -0.36
USP4-203ENST00000415188 DHRS9Q9BPW9 319 aa12.81□□□□□ -0.36
USP4-203ENST00000415188 WNT5BQ9H1J7 359 aa12.81□□□□□ -0.36
USP4-203ENST00000415188 GPR173Q9NS66 373 aa12.81□□□□□ -0.36
USP4-203ENST00000415188 EHFQ9NZC4 300 aa12.81□□□□□ -0.36
USP4-203ENST00000415188 LRFN1Q9P244 771 aa12.81□□□□□ -0.36
USP4-203ENST00000415188 hCG_38984A0A1B0GV85 526 aa12.8□□□□□ -0.36
USP4-203ENST00000415188 RNF222A6NCQ9 220 aa12.8□□□□□ -0.36
USP4-203ENST00000415188 C5orf51A6NDU8 294 aa12.8□□□□□ -0.36
USP4-203ENST00000415188 KRBOX1C9JBD0 128 aa12.8□□□□□ -0.36
USP4-203ENST00000415188 PRSS44E7EML9 344 aa12.8□□□□□ -0.36
USP4-203ENST00000415188 ZNHIT1O43257 154 aa12.8□□□□□ -0.36
USP4-203ENST00000415188 SERPINA5P05154 406 aa12.8□□□□□ -0.36
USP4-203ENST00000415188 SP1P08047 785 aa12.8□□□□□ -0.36
USP4-203ENST00000415188 TMEM225BP0DP42 221 aa12.8□□□□□ -0.36
USP4-203ENST00000415188 ACKR3P25106 362 aa12.8□□□□□ -0.36
USP4-203ENST00000415188 PSMB6P28072 239 aa12.8□□□□□ -0.36
USP4-203ENST00000415188 CA7P43166 264 aa12.8□□□□□ -0.36
USP4-203ENST00000415188 RBP2P50120 134 aa12.8□□□□□ -0.36
USP4-203ENST00000415188 ATP1B3P54709 279 aa12.8□□□□□ -0.36
USP4-203ENST00000415188 ARPC4P59998 168 aa12.8□□□□□ -0.36
USP4-203ENST00000415188 PSG4Q00888 419 aa12.8□□□□□ -0.36
USP4-203ENST00000415188 RSU1Q15404 277 aa12.8□□□□□ -0.36
USP4-203ENST00000415188 SIGIRRQ6IA17 410 aa12.8□□□□□ -0.36
USP4-203ENST00000415188 KCTD9Q7L273 389 aa12.8□□□□□ -0.36
USP4-203ENST00000415188 OVCH2Q7RTZ1 564 aa12.8□□□□□ -0.36
USP4-203ENST00000415188 TMEM178AQ8NBL3 297 aa12.8□□□□□ -0.36
USP4-203ENST00000415188 PXT1Q8NFP0 134 aa12.8□□□□□ -0.36
USP4-203ENST00000415188 OR2M7Q8NG81 312 aa12.8□□□□□ -0.36
USP4-203ENST00000415188 PCNPQ8WW12 178 aaKnown RBP12.8□□□□□ -0.36
USP4-203ENST00000415188 ITLN2Q8WWU7 325 aaPredicted RBP12.8□□□□□ -0.36
USP4-203ENST00000415188 BORCS8Q96FH0 119 aa12.8□□□□□ -0.36
USP4-203ENST00000415188 ALKBH3Q96Q83 286 aaPredicted RBP12.8□□□□□ -0.36
USP4-203ENST00000415188 PRDM14Q9GZV8 571 aa12.8□□□□□ -0.36
USP4-203ENST00000415188 DNTTIP1Q9H147 329 aa12.8□□□□□ -0.36
USP4-203ENST00000415188 RNF122Q9H9V4 155 aa12.8□□□□□ -0.36
USP4-203ENST00000415188 ELL3Q9HB65 397 aaPredicted RBP12.8□□□□□ -0.36
USP4-203ENST00000415188 PARPBPQ9NWS1 579 aa12.8□□□□□ -0.36
USP4-203ENST00000415188 SLC7A11Q9UPY5 501 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms