RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 CXXC4Q9H2H0 198 aa11.95□□□□□ -0.5
GPNMB-203ENST00000409458 PLEKHJ1Q9NW61 149 aa11.95□□□□□ -0.5
GPNMB-203ENST00000409458 POU2F3Q9UKI9 436 aa11.95□□□□□ -0.5
GPNMB-203ENST00000409458 ACACBO00763 2458 aa11.95□□□□□ -0.5
GPNMB-203ENST00000409458 CADP27708 2225 aa11.95□□□□□ -0.5
GPNMB-203ENST00000409458 ZSCAN5BA6NJL1 495 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 SERPINE3A8MV23 424 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 CDIPTO14735 213 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 TCRBP04435 133 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 GRPP07492 148 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 FAUP35544 74 aaKnown RBP11.94□□□□□ -0.5
GPNMB-203ENST00000409458 MAB21L1Q13394 359 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 ARFRP1Q13795 201 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 CARTPTQ16568 116 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 NHLRC3Q5JS37 347 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 PRAMEF6Q5VXH4 476 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 OR52W1Q6IF63 320 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 OR13G1Q8NGZ3 307 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 PRR7Q8TB68 274 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 SNAPC3Q92966 411 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 EMG1Q92979 244 aaKnown RBP11.94□□□□□ -0.5
GPNMB-203ENST00000409458 SULT4A1Q9BR01 284 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 MRPL37Q9BZE1 423 aaKnown RBP11.94□□□□□ -0.5
GPNMB-203ENST00000409458 NUDT15Q9NV35 164 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 NKIRAS2Q9NYR9 191 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 ZNF107Q9UII5 783 aaPredicted RBP11.94□□□□□ -0.5
GPNMB-203ENST00000409458 HSF4Q9ULV5 492 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 NUBP2Q9Y5Y2 271 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 SMG1Q96Q15 3661 aaKnown RBP11.94□□□□□ -0.5
GPNMB-203ENST00000409458 TPRP12270 2363 aaKnown RBP11.94□□□□□ -0.5
GPNMB-203ENST00000409458 TRAV6A0A075B6T7 132 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 ZNF736B4DX44 427 aaPredicted RBP11.94□□□□□ -0.5
GPNMB-203ENST00000409458 M0QYG6 137 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 OR7C1O76099 320 aaPredicted RBP11.94□□□□□ -0.5
GPNMB-203ENST00000409458 CD74P04233 296 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 PRKACAP17612 351 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 GNLYP22749 145 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 RAB25P57735 213 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 ARL6IP1Q15041 203 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 ADAM5Q6NVV9 412 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 BRICD5Q6PL45 260 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 SLC22A25Q6T423 547 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 OR56B4Q8NH76 319 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 CA5BP1Q8WTZ4 195 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 DYRK2Q92630 601 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 FBXW5Q969U6 566 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 CNTNAP3BQ96NU0 1288 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 HDHD3Q9BSH5 251 aaPredicted RBP11.94□□□□□ -0.5
GPNMB-203ENST00000409458 FAAP24Q9BTP7 215 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 CNTNAP3Q9BZ76 1288 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 TINAGL1Q9GZM7 467 aaPredicted RBP11.94□□□□□ -0.5
GPNMB-203ENST00000409458 CA10Q9NS85 328 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 COPZ2Q9P299 210 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 AK3Q9UIJ7 227 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 ERRFI1Q9UJM3 462 aaPredicted RBP11.94□□□□□ -0.5
GPNMB-203ENST00000409458 POLDIP2Q9Y2S7 368 aa11.94□□□□□ -0.5
GPNMB-203ENST00000409458 A0A1B0GUH1 482 aa11.93□□□□□ -0.5
GPNMB-203ENST00000409458 FAM90A10PA6NDY2 464 aa11.93□□□□□ -0.5
GPNMB-203ENST00000409458 FAM90A18PA6NE21 464 aa11.93□□□□□ -0.5
GPNMB-203ENST00000409458 FAM90A16PA6NEW6 464 aa11.93□□□□□ -0.5
GPNMB-203ENST00000409458 FAM90A20PA6NIJ5 464 aa11.93□□□□□ -0.5
GPNMB-203ENST00000409458 FAM90A8PA6NJQ4 464 aa11.93□□□□□ -0.5
GPNMB-203ENST00000409458 FAM90A7PA6NKC0 464 aa11.93□□□□□ -0.5
GPNMB-203ENST00000409458 FAM90A22PA8MWA6 464 aa11.93□□□□□ -0.5
GPNMB-203ENST00000409458 FAM90A12PA8MX19 464 aa11.93□□□□□ -0.5
GPNMB-203ENST00000409458 FAM90A5PA8MXJ8 464 aa11.93□□□□□ -0.5
GPNMB-203ENST00000409458 FAM90A23PA8MXZ1 464 aa11.93□□□□□ -0.5
GPNMB-203ENST00000409458 INMT-MINDY4F8WBC2 141 aa11.93□□□□□ -0.5
GPNMB-203ENST00000409458 PDCD6O75340 191 aa11.93□□□□□ -0.5
GPNMB-203ENST00000409458 CA11O75493 328 aa11.93□□□□□ -0.5
GPNMB-203ENST00000409458 RAB3DO95716 219 aa11.93□□□□□ -0.5
GPNMB-203ENST00000409458 FAM90A15PP0C7V4 464 aa11.93□□□□□ -0.5
GPNMB-203ENST00000409458 FAM90A13PP0C7W8 464 aa11.93□□□□□ -0.5
GPNMB-203ENST00000409458 FAM90A14PP0C7W9 464 aa11.93□□□□□ -0.5
GPNMB-203ENST00000409458 FAM90A24PP0C7X0 464 aa11.93□□□□□ -0.5
GPNMB-203ENST00000409458 TATDN3Q17R31 274 aa11.93□□□□□ -0.5
GPNMB-203ENST00000409458 BTN2A1Q7KYR7 527 aa11.93□□□□□ -0.5
GPNMB-203ENST00000409458 C11orf53Q8IXP5 236 aa11.93□□□□□ -0.5
GPNMB-203ENST00000409458 FAM58AQ8N1B3 248 aa11.93□□□□□ -0.5
GPNMB-203ENST00000409458 OR2Z1Q8NG97 314 aa11.93□□□□□ -0.5
GPNMB-203ENST00000409458 LINC01560Q8TB33 94 aa11.93□□□□□ -0.5
GPNMB-203ENST00000409458 MRPL24Q96A35 216 aaKnown RBP11.93□□□□□ -0.5
GPNMB-203ENST00000409458 OCSTAMPQ9BR26 566 aa11.93□□□□□ -0.5
GPNMB-203ENST00000409458 TLNRD1Q9H1K6 362 aa11.93□□□□□ -0.5
GPNMB-203ENST00000409458 C20orf85Q9H1P6 137 aa11.93□□□□□ -0.5
GPNMB-203ENST00000409458 KALRNO60229 2985 aa11.92□□□□□ -0.5
GPNMB-203ENST00000409458 PGA5P0DJD9 388 aa11.92□□□□□ -0.5
GPNMB-203ENST00000409458 NAT1P18440 290 aa11.92□□□□□ -0.5
GPNMB-203ENST00000409458 CBX5P45973 191 aa11.92□□□□□ -0.5
GPNMB-203ENST00000409458 ERVK11-1P61568 191 aa11.92□□□□□ -0.5
GPNMB-203ENST00000409458 ST3GAL2Q16842 350 aa11.92□□□□□ -0.5
GPNMB-203ENST00000409458 ATAD3CQ5T2N8 411 aa11.92□□□□□ -0.5
GPNMB-203ENST00000409458 ZNF782Q6ZMW2 699 aaPredicted RBP11.92□□□□□ -0.5
GPNMB-203ENST00000409458 ZNF826PQ6ZT77 177 aa11.92□□□□□ -0.5
GPNMB-203ENST00000409458 SPERTQ8NA61 448 aa11.92□□□□□ -0.5
GPNMB-203ENST00000409458 MAFIPQ8WZ33 124 aa11.92□□□□□ -0.5
GPNMB-203ENST00000409458 POM121Q96HA1 1249 aa11.92□□□□□ -0.5
GPNMB-203ENST00000409458 NRIP2Q9BQI9 281 aa11.92□□□□□ -0.5
GPNMB-203ENST00000409458 TAAR3PQ9P1P4 343 aa11.92□□□□□ -0.5
GPNMB-203ENST00000409458 ZNF230Q9UIE0 474 aaPredicted RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms