RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 TRGV5A0A0B4J1U4 118 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 TRBV9A0A0B4J1U6 114 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 CDK2AP1O14519 115 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 PIAS2O75928 621 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 STAG3L3P0CL85 134 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 CBR1P16152 277 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 CDKN2AP42771 156 aaKnown RBP5.43□□□□□ -1.54
SCN1A-203ENST00000409050 EMDP50402 254 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 RAC3P60763 192 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 SELENOTP62341 195 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 IRF3Q14653 427 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 ST3GAL2Q16842 350 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 OVCH2Q7RTZ1 564 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 OR5C1Q8NGR4 320 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 PTP4A1Q93096 173 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 UBE2FQ969M7 185 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 FAM103A1Q9BTL3 118 aaKnown RBP5.43□□□□□ -1.54
SCN1A-203ENST00000409050 CHRNA10Q9GZZ6 450 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 TMEM202A6NGA9 273 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 SMPD2O60906 423 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 OR5AL1P0C617 328 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 RPL30P62888 115 aaKnown RBP5.43□□□□□ -1.54
SCN1A-203ENST00000409050 PPP1R1AQ13522 171 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 SLC25A35Q3KQZ1 300 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 TMEM108Q6UXF1 575 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 TMEM179BQ7Z7N9 219 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 YRDCQ86U90 279 aaKnown RBP5.43□□□□□ -1.54
SCN1A-203ENST00000409050 MUC20Q8N307 709 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-203ENST00000409050 RAB1CQ92928 201 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 SFXN3Q9BWM7 321 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 MFRPQ9BY79 579 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 VCX2Q9H322 139 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 ZFP64Q9NPA5 681 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 CLEC1BQ9P126 229 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 KLK11Q9UBX7 282 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 PRSS50Q9UI38 385 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 ANXA10Q9UJ72 324 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 EDIL3O43854 480 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 PITX3O75364 302 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 PRKRAO75569 313 aaKnown RBP5.43□□□□□ -1.54
SCN1A-203ENST00000409050 B3GALT4O96024 378 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 FABP4P15090 132 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 WNT3P56703 355 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 ZNF750Q32MQ0 723 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 CCDC144NLQ6NUI1 221 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 RFLNAQ6ZTI6 216 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 RPEQ96AT9 228 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 ACY3Q96HD9 319 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 EMC6Q9BV81 110 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 PECRQ9BY49 303 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 MRPS16Q9Y3D3 137 aaKnown RBP5.43□□□□□ -1.54
SCN1A-203ENST00000409050 EFSO43281 561 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 OPN1LWP04000 364 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 RPLP1P05386 114 aaKnown RBP5.42□□□□□ -1.54
SCN1A-203ENST00000409050 OR5AC1P0C628 307 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 OR3A1P47881 315 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 ZNF117Q03924 483 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 ZP4Q12836 540 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 OR2M3Q8NG83 312 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 OR5AU1Q8NGC0 362 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 ZG16BQ96DA0 208 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 C12orf49Q9H741 205 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 ISG20L2Q9H9L3 353 aaKnown RBP5.42□□□□□ -1.54
SCN1A-203ENST00000409050 PIPOXQ9P0Z9 390 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 FBXL17Q9UF56 701 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 ZFP30Q9Y2G7 519 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 LAMA4Q16363 1823 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 COL22A1Q8NFW1 1626 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-203ENST00000409050 DSPPQ9NZW4 1301 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 CBY3A6NI87 242 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 J3QT63 122 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 J3QW42 95 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 ADAM20O43506 726 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 GABRG2P18507 467 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 G6PCP35575 357 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 CCL11P51671 97 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 PRICKLE4Q2TBC4 344 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 VAX1Q5SQQ9 334 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 MAMSTRQ6ZN01 415 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 SLC35E3Q7Z769 313 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 OR8G5Q8NG78 346 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 OR5M1Q8NGP8 315 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 IL22RA2Q969J5 263 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 GABRG3Q99928 467 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 PRR14Q9BWN1 585 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 TINAGL1Q9GZM7 467 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-203ENST00000409050 TNFSF18Q9UNG2 199 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 CCL26Q9Y258 94 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 DHRS7CA6NNS2 312 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 PLPP3O14495 311 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 GOSR1O95249 250 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 MMP16P51512 607 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 PRDX4Q13162 271 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 OR5A2Q8NGI9 324 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 OR5R1Q8NH85 324 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 LRFN3Q9BTN0 628 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 HEXA-AS1Q9H8Q6 139 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 H0Y8G0 127 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 M0R1B8 84 aa5.42□□□□□ -1.54
SCN1A-203ENST00000409050 ACP1P24666 158 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms