RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 CST9Q5W186 159 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 TMEM42Q69YG0 159 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 C11orf71Q6IPW1 123 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 Q6ZVH6 145 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 SLC36A1Q7Z2H8 476 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 METTL13Q8N6R0 699 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 OR13A1Q8NGR1 328 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 OR10K1Q8NGX5 313 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 HAVCR2Q8TDQ0 301 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 C16orf78Q8WTQ4 265 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 TCEAL3Q969E4 200 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 TMEM230Q96A57 120 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 EXOSC8Q96B26 276 aaKnown RBP3.22□□□□□ -1.89
HMGB1-204ENST00000399489 C2orf88Q9BSF0 95 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 BOLA2Q9H3K6 86 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 MAP1LC3AQ9H492 121 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 DDX31Q9H8H2 851 aaKnown RBP3.22□□□□□ -1.89
HMGB1-204ENST00000399489 AMBNQ9NP70 447 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 TAS2R13Q9NYV9 303 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 GLTPQ9NZD2 209 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 OR1A1Q9P1Q5 309 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 FBXO5Q9UKT4 447 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 HHLA2Q9UM44 414 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 VSIG4Q9Y279 399 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 ZNF257Q9Y2Q1 563 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 TMEM56-RWDD3S4R434 201 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 MROH1Q8NDA8 1641 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 NOTCH2Q04721 2471 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 PVALEFA0A1B0GWK0 134 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 FAM220BPB1ANY3 271 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 TXNDC9O14530 226 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 TAAR5O14804 337 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 SERPINB7O75635 380 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 OR2B3O76000 313 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 PPP1R3DO95685 299 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 OGNP20774 298 aaKnown RBP3.22□□□□□ -1.89
HMGB1-204ENST00000399489 IGHV1-2P23083 117 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 MEOX2P50222 304 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 GNG2P59768 71 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 RAP1BP61224 184 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 SNRPD1P62314 119 aaKnown RBP3.22□□□□□ -1.89
HMGB1-204ENST00000399489 SLC35A1P78382 337 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 FKBP3Q00688 224 aaKnown RBP3.22□□□□□ -1.89
HMGB1-204ENST00000399489 FAM53BQ14153 422 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 MICAQ29983 383 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 LRRC26Q2I0M4 334 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 SLC25A35Q3KQZ1 300 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 ZNF571Q7Z3V5 609 aaPredicted RBP3.22□□□□□ -1.89
HMGB1-204ENST00000399489 FAM19A5Q7Z5A7 132 aaPredicted RBP3.22□□□□□ -1.89
HMGB1-204ENST00000399489 MRPL55Q7Z7F7 128 aaKnown RBP3.22□□□□□ -1.89
HMGB1-204ENST00000399489 SLC30A8Q8IWU4 369 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 C6orf223Q8N319 242 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 CIARTQ8N365 385 aaPredicted RBP3.22□□□□□ -1.89
HMGB1-204ENST00000399489 OR9A2Q8NGT5 310 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 OR13D1Q8NGV5 346 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 OR51Q1Q8NH59 317 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 ZFAND1Q8TCF1 268 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 TAF15Q92804 592 aaKnown RBP eCLIP3.22□□□□□ -1.89
HMGB1-204ENST00000399489 ZHX1-C8orf76Q96EF9 292 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 ATXN7L3BQ96GX2 97 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 FAM19A4Q96LR4 140 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 MAGEB18Q96M61 343 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 DOCK7Q96N67 2140 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 P2RX4Q99571 388 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 SELENOIQ9C0D9 397 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 YIPF3Q9GZM5 350 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 CLMPQ9H6B4 373 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 SPHK2Q9NRA0 654 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 TP53TG5Q9Y2B4 290 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 PRELID3BQ9Y3B1 194 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 KCNE3Q9Y6H6 103 aa3.22□□□□□ -1.89
HMGB1-204ENST00000399489 CCDC141Q6ZP82 1450 aa3.21□□□□□ -1.89
HMGB1-204ENST00000399489 NHSL1Q5SYE7 1610 aa3.21□□□□□ -1.9
HMGB1-204ENST00000399489 IGHV3OR16-13A0A075B7E8 117 aa3.21□□□□□ -1.9
HMGB1-204ENST00000399489 A0A087WW49 117 aa3.21□□□□□ -1.9
HMGB1-204ENST00000399489 A0A087WYN8 130 aa3.21□□□□□ -1.9
HMGB1-204ENST00000399489 C12orf77C9JDV5 145 aa3.21□□□□□ -1.9
HMGB1-204ENST00000399489 KPNA4O00629 521 aaPredicted RBP3.21□□□□□ -1.9
HMGB1-204ENST00000399489 SULT1C4O75897 302 aa3.21□□□□□ -1.9
HMGB1-204ENST00000399489 PCCAP05165 728 aaPredicted RBP3.21□□□□□ -1.9
HMGB1-204ENST00000399489 CST2P09228 141 aa3.21□□□□□ -1.9
HMGB1-204ENST00000399489 RBP1P09455 135 aa3.21□□□□□ -1.9
HMGB1-204ENST00000399489 AKR1C4P17516 323 aa3.21□□□□□ -1.9
HMGB1-204ENST00000399489 RPS9P46781 194 aaKnown RBP3.21□□□□□ -1.9
HMGB1-204ENST00000399489 RAB13P51153 203 aa3.21□□□□□ -1.9
HMGB1-204ENST00000399489 CCR6P51684 374 aa3.21□□□□□ -1.9
HMGB1-204ENST00000399489 TAS2R41P59536 307 aa3.21□□□□□ -1.9
HMGB1-204ENST00000399489 CDC42P60953 191 aa3.21□□□□□ -1.9
HMGB1-204ENST00000399489 RAB2AP61019 212 aa3.21□□□□□ -1.9
HMGB1-204ENST00000399489 RPL32P62910 135 aaKnown RBP3.21□□□□□ -1.9
HMGB1-204ENST00000399489 MS4A2Q01362 244 aa3.21□□□□□ -1.9
HMGB1-204ENST00000399489 SIX1Q15475 284 aaPredicted RBP3.21□□□□□ -1.9
HMGB1-204ENST00000399489 TSNQ15631 228 aaKnown RBP3.21□□□□□ -1.9
HMGB1-204ENST00000399489 HLA-DRB5Q30154 266 aa3.21□□□□□ -1.9
HMGB1-204ENST00000399489 CNPY1Q3B7I2 92 aa3.21□□□□□ -1.9
HMGB1-204ENST00000399489 ARHGAP11BQ3KRB8 267 aa3.21□□□□□ -1.9
HMGB1-204ENST00000399489 PAGE3Q5JUK9 113 aa3.21□□□□□ -1.9
HMGB1-204ENST00000399489 C10orf107Q8IVU9 208 aa3.21□□□□□ -1.9
HMGB1-204ENST00000399489 SKA3Q8IX90 412 aa3.21□□□□□ -1.9
HMGB1-204ENST00000399489 SLC34A3Q8N130 599 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms