RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 CLDND2Q8NHS1 167 aa5.83□□□□□ -1.48
LIMA1-202ENST00000394943 DYNC2LI1Q8TCX1 351 aa5.83□□□□□ -1.48
LIMA1-202ENST00000394943 MED30Q96HR3 178 aa5.83□□□□□ -1.48
LIMA1-202ENST00000394943 HIST1H2AAQ96QV6 131 aa5.83□□□□□ -1.48
LIMA1-202ENST00000394943 OR51E2Q9H255 320 aa5.83□□□□□ -1.48
LIMA1-202ENST00000394943 PLEKHA1Q9HB21 404 aa5.83□□□□□ -1.48
LIMA1-202ENST00000394943 VCX3AQ9NNX9 186 aa5.83□□□□□ -1.48
LIMA1-202ENST00000394943 ABRACLQ9P1F3 81 aa5.83□□□□□ -1.48
LIMA1-202ENST00000394943 RABL2AQ9UBK7 228 aaPredicted RBP5.83□□□□□ -1.48
LIMA1-202ENST00000394943 SSR3Q9UNL2 185 aa5.83□□□□□ -1.48
LIMA1-202ENST00000394943 RABL2BQ9UNT1 228 aa5.83□□□□□ -1.48
LIMA1-202ENST00000394943 CACNG2Q9Y698 323 aa5.83□□□□□ -1.48
LIMA1-202ENST00000394943 PRR14LQ5THK1 2151 aa5.83□□□□□ -1.48
LIMA1-202ENST00000394943 SMIM31A0A1B0GVY4 71 aa5.83□□□□□ -1.48
LIMA1-202ENST00000394943 MMP9P14780 707 aa5.83□□□□□ -1.48
LIMA1-202ENST00000394943 USF1P22415 310 aaPredicted RBP5.83□□□□□ -1.48
LIMA1-202ENST00000394943 CD34P28906 385 aa5.83□□□□□ -1.48
LIMA1-202ENST00000394943 SMIM21Q3B7S5 101 aa5.83□□□□□ -1.48
LIMA1-202ENST00000394943 DDI2Q5TDH0 399 aa5.83□□□□□ -1.48
LIMA1-202ENST00000394943 HAGHLQ6PII5 290 aaPredicted RBP5.83□□□□□ -1.48
LIMA1-202ENST00000394943 C17orf107Q6ZR85 190 aa5.83□□□□□ -1.48
LIMA1-202ENST00000394943 C1QL2Q7Z5L3 287 aa5.83□□□□□ -1.48
LIMA1-202ENST00000394943 BIVMQ86UB2 503 aa5.83□□□□□ -1.48
LIMA1-202ENST00000394943 OR8S1Q8NH09 359 aa5.83□□□□□ -1.48
LIMA1-202ENST00000394943 TSEN15Q8WW01 171 aaKnown RBP5.83□□□□□ -1.48
LIMA1-202ENST00000394943 SNX22Q96L94 193 aa5.83□□□□□ -1.48
LIMA1-202ENST00000394943 KCTD7Q96MP8 289 aa5.83□□□□□ -1.48
LIMA1-202ENST00000394943 OR51B6Q9H340 312 aa5.83□□□□□ -1.48
LIMA1-202ENST00000394943 V9GY05 133 aa5.83□□□□□ -1.48
LIMA1-202ENST00000394943 ICE1Q9Y2F5 2266 aa5.83□□□□□ -1.48
LIMA1-202ENST00000394943 EEF1B2P24534 225 aaKnown RBP5.83□□□□□ -1.48
LIMA1-202ENST00000394943 PPP3R1P63098 170 aa5.83□□□□□ -1.48
LIMA1-202ENST00000394943 CCL8P80075 99 aa5.83□□□□□ -1.48
LIMA1-202ENST00000394943 SIGIRRQ6IA17 410 aa5.83□□□□□ -1.48
LIMA1-202ENST00000394943 OR13C9Q8NGT0 318 aa5.83□□□□□ -1.48
LIMA1-202ENST00000394943 ACOT12Q8WYK0 555 aa5.83□□□□□ -1.48
LIMA1-202ENST00000394943 WDFY2Q96P53 400 aa5.83□□□□□ -1.48
LIMA1-202ENST00000394943 CENPOQ9BU64 300 aa5.83□□□□□ -1.48
LIMA1-202ENST00000394943 TMED9Q9BVK6 235 aa5.83□□□□□ -1.48
LIMA1-202ENST00000394943 GSTK1Q9Y2Q3 226 aa5.83□□□□□ -1.48
LIMA1-202ENST00000394943 TRAV20A0A0B4J274 112 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 IGHV4-61A0A0C4DH41 118 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 C17orf98A8MV24 154 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 F8VVB4 439 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 F8VWA3 439 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 SLC33A1O00400 549 aaPredicted RBP5.82□□□□□ -1.48
LIMA1-202ENST00000394943 CDIPTO14735 213 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 SCGNO76038 276 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 VSIG8P0DPA2 414 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 ETV6P41212 452 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 HAAOP46952 286 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 FAM189A2Q15884 450 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 TCF23Q7RTU1 214 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 ZCCHC24Q8N2G6 241 aaKnown RBP5.82□□□□□ -1.48
LIMA1-202ENST00000394943 C11orf42Q8N5U0 333 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 LRRC29Q8WV35 223 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 TMIGD2Q96BF3 282 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 NEIL1Q96FI4 390 aaPredicted RBP5.82□□□□□ -1.48
LIMA1-202ENST00000394943 BARHL1Q9BZE3 327 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 METTL9Q9H1A3 318 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 MBNL3Q9NUK0 354 aaKnown RBP5.82□□□□□ -1.48
LIMA1-202ENST00000394943 DIDO1Q9BTC0 2240 aaKnown RBP5.82□□□□□ -1.48
LIMA1-202ENST00000394943 A0A0A6YYD4 124 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 M0R1W7 72 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 SFTPBP07988 381 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 RAB3BP20337 219 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 BCL3P20749 454 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 GPR6P46095 362 aaPredicted RBP5.82□□□□□ -1.48
LIMA1-202ENST00000394943 OR3A4PP47883 348 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 MTCP1P56278 107 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 BPIFB3P59826 476 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 GFOD2Q3B7J2 385 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 FAM27D1Q5T7N8 215 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 SLC35E4Q6ICL7 350 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 USP43Q70EL4 1123 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 FAM58AQ8N1B3 248 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 ST8SIA4Q92187 359 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 TIMD4Q96H15 378 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 DCTN5Q9BTE1 182 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 BPESC1Q9GZL8 116 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 LPAR5Q9H1C0 372 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 DCAF16Q9NXF7 216 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 PTPN13Q12923 2485 aa5.82□□□□□ -1.48
LIMA1-202ENST00000394943 CEACAM18A8MTB9 384 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 ITGB1BP1O14713 200 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 WNT9BO14905 357 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 CDC14BO60729 498 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 CYB5R3P00387 301 aaPredicted RBP5.81□□□□□ -1.48
LIMA1-202ENST00000394943 HTR2CP28335 458 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 OR3A1P47881 315 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 GZMKP49863 264 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 RAB39BQ96DA2 213 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 SLITRK2Q9H156 845 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 SPATA2Q9UM82 520 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 INSIG2Q9Y5U4 225 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 TRAV24A0A0B4J272 114 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 OR2AT4A6NND4 320 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 NAPSAO96009 420 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 LIPFP07098 398 aa5.81□□□□□ -1.48
LIMA1-202ENST00000394943 NAT1P18440 290 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms