RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 ZNRF1Q8ND25 227 aa11.07□□□□□ -0.64
VPS28-202ENST00000377348 EMG1Q92979 244 aaKnown RBP11.07□□□□□ -0.64
VPS28-202ENST00000377348 OR14A2Q96R54 314 aa11.07□□□□□ -0.64
VPS28-202ENST00000377348 DNTTIP1Q9H147 329 aa11.07□□□□□ -0.64
VPS28-202ENST00000377348 ELL3Q9HB65 397 aaPredicted RBP11.07□□□□□ -0.64
VPS28-202ENST00000377348 RBFOX1Q9NWB1 397 aaKnown RBP11.07□□□□□ -0.64
VPS28-202ENST00000377348 AUP1Q9Y679 476 aa11.07□□□□□ -0.64
VPS28-202ENST00000377348 ATRQ13535 2644 aa11.07□□□□□ -0.64
VPS28-202ENST00000377348 ENSAO43768 121 aaKnown RBP11.06□□□□□ -0.64
VPS28-202ENST00000377348 ALX3O95076 343 aa11.06□□□□□ -0.64
VPS28-202ENST00000377348 NDUFB7P17568 137 aa11.06□□□□□ -0.64
VPS28-202ENST00000377348 EEF1B2P24534 225 aaKnown RBP11.06□□□□□ -0.64
VPS28-202ENST00000377348 PRDX2P32119 198 aa11.06□□□□□ -0.64
VPS28-202ENST00000377348 SNU13P55769 128 aaKnown RBP11.06□□□□□ -0.64
VPS28-202ENST00000377348 BDH1Q02338 343 aa11.06□□□□□ -0.64
VPS28-202ENST00000377348 ACSM1Q08AH1 577 aa11.06□□□□□ -0.64
VPS28-202ENST00000377348 INSL4Q14641 139 aa11.06□□□□□ -0.64
VPS28-202ENST00000377348 KISS1Q15726 138 aa11.06□□□□□ -0.64
VPS28-202ENST00000377348 Q499Y3 187 aa11.06□□□□□ -0.64
VPS28-202ENST00000377348 LRRC10Q5BKY1 277 aa11.06□□□□□ -0.64
VPS28-202ENST00000377348 CD276Q5ZPR3 534 aa11.06□□□□□ -0.64
VPS28-202ENST00000377348 PRSS48Q7RTY5 328 aa11.06□□□□□ -0.64
VPS28-202ENST00000377348 C1QL2Q7Z5L3 287 aa11.06□□□□□ -0.64
VPS28-202ENST00000377348 SATL1Q86VE3 508 aa11.06□□□□□ -0.64
VPS28-202ENST00000377348 MKXQ8IYA7 352 aa11.06□□□□□ -0.64
VPS28-202ENST00000377348 TMEM185AQ8NFB2 350 aa11.06□□□□□ -0.64
VPS28-202ENST00000377348 OR52N4Q8NGI2 321 aa11.06□□□□□ -0.64
VPS28-202ENST00000377348 H1FXQ92522 213 aaKnown RBP11.06□□□□□ -0.64
VPS28-202ENST00000377348 SDSLQ96GA7 329 aa11.06□□□□□ -0.64
VPS28-202ENST00000377348 MED30Q96HR3 178 aa11.06□□□□□ -0.64
VPS28-202ENST00000377348 MRI1Q9BV20 369 aa11.06□□□□□ -0.64
VPS28-202ENST00000377348 Q9H521 79 aa11.06□□□□□ -0.64
VPS28-202ENST00000377348 NEK6Q9HC98 313 aa11.06□□□□□ -0.64
VPS28-202ENST00000377348 SLC25A10Q9UBX3 287 aaPredicted RBP11.06□□□□□ -0.64
VPS28-202ENST00000377348 TRAV8-7A0A075B6U6 113 aa11.05□□□□□ -0.64
VPS28-202ENST00000377348 IGHV3OR16-10A0A075B7F0 116 aa11.05□□□□□ -0.64
VPS28-202ENST00000377348 TRBV5-7A0A0A0MS05 114 aa11.05□□□□□ -0.64
VPS28-202ENST00000377348 MAGEA13PA6NCF6 341 aa11.05□□□□□ -0.64
VPS28-202ENST00000377348 ZNF879B4DU55 563 aa11.05□□□□□ -0.64
VPS28-202ENST00000377348 CYB5AP00167 134 aa11.05□□□□□ -0.64
VPS28-202ENST00000377348 KNG1P01042 644 aa11.05□□□□□ -0.64
VPS28-202ENST00000377348 FSHBP01225 129 aa11.05□□□□□ -0.64
VPS28-202ENST00000377348 CD1AP06126 327 aa11.05□□□□□ -0.64
VPS28-202ENST00000377348 HSMCR30P0CW71 290 aa11.05□□□□□ -0.64
VPS28-202ENST00000377348 IGFBP3P17936 291 aaPredicted RBP11.05□□□□□ -0.64
VPS28-202ENST00000377348 CAPZA1P52907 286 aa11.05□□□□□ -0.64
VPS28-202ENST00000377348 ZP1P60852 638 aa11.05□□□□□ -0.64
VPS28-202ENST00000377348 FGF12P61328 243 aa11.05□□□□□ -0.64
VPS28-202ENST00000377348 PPP3R1P63098 170 aa11.05□□□□□ -0.64
VPS28-202ENST00000377348 KLF17Q5JT82 389 aaPredicted RBP11.05□□□□□ -0.64
VPS28-202ENST00000377348 TMED9Q9BVK6 235 aa11.05□□□□□ -0.64
VPS28-202ENST00000377348 RPUSD1Q9UJJ7 312 aaKnown RBP11.05□□□□□ -0.64
VPS28-202ENST00000377348 BLOC1S6Q9UL45 172 aa11.05□□□□□ -0.64
VPS28-202ENST00000377348 GABRPO00591 440 aa11.04□□□□□ -0.64
VPS28-202ENST00000377348 PIN1P1O15428 100 aa11.04□□□□□ -0.64
VPS28-202ENST00000377348 MAGEB3O15480 346 aa11.04□□□□□ -0.64
VPS28-202ENST00000377348 KDM4BO94953 1096 aa11.04□□□□□ -0.64
VPS28-202ENST00000377348 ECDO95905 644 aaPredicted RBP11.04□□□□□ -0.64
VPS28-202ENST00000377348 SFTPBP07988 381 aa11.04□□□□□ -0.64
VPS28-202ENST00000377348 TMEM225BP0DP42 221 aa11.04□□□□□ -0.64
VPS28-202ENST00000377348 PRKACAP17612 351 aa11.04□□□□□ -0.64
VPS28-202ENST00000377348 DUSP1P28562 367 aa11.04□□□□□ -0.64
VPS28-202ENST00000377348 ARF6P62330 175 aa11.04□□□□□ -0.64
VPS28-202ENST00000377348 SRSF2Q01130 221 aaKnown RBP11.04□□□□□ -0.64
VPS28-202ENST00000377348 COL10A1Q03692 680 aa11.04□□□□□ -0.64
VPS28-202ENST00000377348 DDI2Q5TDH0 399 aa11.04□□□□□ -0.64
VPS28-202ENST00000377348 LIPKQ5VXJ0 399 aa11.04□□□□□ -0.64
VPS28-202ENST00000377348 FAM58AQ8N1B3 248 aa11.04□□□□□ -0.64
VPS28-202ENST00000377348 NANPQ8TBE9 248 aa11.04□□□□□ -0.64
VPS28-202ENST00000377348 TNFAIP8L1Q8WVP5 186 aa11.04□□□□□ -0.64
VPS28-202ENST00000377348 C22orf15Q8WYQ4 148 aa11.04□□□□□ -0.64
VPS28-202ENST00000377348 DERL3Q96Q80 235 aa11.04□□□□□ -0.64
VPS28-202ENST00000377348 GPER1Q99527 375 aa11.04□□□□□ -0.64
VPS28-202ENST00000377348 DCTN5Q9BTE1 182 aa11.04□□□□□ -0.64
VPS28-202ENST00000377348 NOX4Q9NPH5 578 aa11.04□□□□□ -0.64
VPS28-202ENST00000377348 RGS9O75916 674 aaPredicted RBP11.03□□□□□ -0.64
VPS28-202ENST00000377348 MAS1P04201 325 aa11.03□□□□□ -0.64
VPS28-202ENST00000377348 ALDOBP05062 364 aa11.03□□□□□ -0.64
VPS28-202ENST00000377348 PPIAL4GP0DN37 164 aa11.03□□□□□ -0.64
VPS28-202ENST00000377348 IGHV4-38-2P0DP08 117 aa11.03□□□□□ -0.64
VPS28-202ENST00000377348 EPHA1P21709 976 aa11.03□□□□□ -0.64
VPS28-202ENST00000377348 BDKRB2P30411 391 aa11.03□□□□□ -0.64
VPS28-202ENST00000377348 TGFBR2P37173 567 aa11.03□□□□□ -0.64
VPS28-202ENST00000377348 OR3A4PP47883 348 aa11.03□□□□□ -0.64
VPS28-202ENST00000377348 CAV3P56539 151 aa11.03□□□□□ -0.64
VPS28-202ENST00000377348 ARMCX4Q5H9R4 360 aa11.03□□□□□ -0.64
VPS28-202ENST00000377348 FAM27D1Q5T7N8 215 aa11.03□□□□□ -0.64
VPS28-202ENST00000377348 Q8IYB0 196 aa11.03□□□□□ -0.64
VPS28-202ENST00000377348 ZNF561Q8N587 486 aa11.03□□□□□ -0.64
VPS28-202ENST00000377348 ASCC1Q8N9N2 400 aaKnown RBP11.03□□□□□ -0.64
VPS28-202ENST00000377348 PNLDC1Q8NA58 520 aaKnown RBP11.03□□□□□ -0.64
VPS28-202ENST00000377348 LY6G5BQ8NDX9 201 aa11.03□□□□□ -0.64
VPS28-202ENST00000377348 OR10K1Q8NGX5 313 aa11.03□□□□□ -0.64
VPS28-202ENST00000377348 UFD1Q92890 307 aa11.03□□□□□ -0.64
VPS28-202ENST00000377348 TMEM203Q969S6 136 aa11.03□□□□□ -0.64
VPS28-202ENST00000377348 PCGF1Q9BSM1 259 aa11.03□□□□□ -0.64
VPS28-202ENST00000377348 FAM192AQ9GZU8 254 aa11.03□□□□□ -0.64
VPS28-202ENST00000377348 CNTD2Q9H8S5 307 aa11.03□□□□□ -0.64
VPS28-202ENST00000377348 HMG20AQ9NP66 347 aa11.03□□□□□ -0.64
VPS28-202ENST00000377348 TMEM138Q9NPI0 162 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms