RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 IL37Q9NZH6 218 aa1.09□□□□□ -2.23
VPS13A-206ENST00000376646 TRIP11Q15643 1979 aa1.09□□□□□ -2.23
VPS13A-206ENST00000376646 RPRD2Q5VT52 1461 aaKnown RBP1.09□□□□□ -2.23
VPS13A-206ENST00000376646 hCG_2039718K7EN88 272 aa1.09□□□□□ -2.24
VPS13A-206ENST00000376646 TCAPO15273 167 aa1.09□□□□□ -2.24
VPS13A-206ENST00000376646 NRASP01111 189 aa1.09□□□□□ -2.24
VPS13A-206ENST00000376646 HRASP01112 189 aa1.09□□□□□ -2.24
VPS13A-206ENST00000376646 KRASP01116 189 aa1.09□□□□□ -2.24
VPS13A-206ENST00000376646 CD8AP01732 235 aa1.09□□□□□ -2.24
VPS13A-206ENST00000376646 CDK1P06493 297 aa1.09□□□□□ -2.24
VPS13A-206ENST00000376646 CCL2P13500 99 aa1.09□□□□□ -2.24
VPS13A-206ENST00000376646 TAC1P20366 129 aa1.09□□□□□ -2.24
VPS13A-206ENST00000376646 DNASE1L1P49184 302 aa1.09□□□□□ -2.24
VPS13A-206ENST00000376646 TUFMP49411 452 aaKnown RBP1.09□□□□□ -2.24
VPS13A-206ENST00000376646 ACOT2P49753 483 aa1.09□□□□□ -2.24
VPS13A-206ENST00000376646 FAM53BQ14153 422 aa1.09□□□□□ -2.24
VPS13A-206ENST00000376646 C18orf21Q32NC0 220 aaPredicted RBP1.09□□□□□ -2.24
VPS13A-206ENST00000376646 FBXO48Q5FWF7 155 aa1.09□□□□□ -2.24
VPS13A-206ENST00000376646 KCTD16Q68DU8 428 aa1.09□□□□□ -2.24
VPS13A-206ENST00000376646 SPINT4Q6UDR6 99 aa1.09□□□□□ -2.24
VPS13A-206ENST00000376646 C16orf47Q6ZP98 133 aaPredicted RBP1.09□□□□□ -2.24
VPS13A-206ENST00000376646 FAM231DQ6ZW35 169 aa1.09□□□□□ -2.24
VPS13A-206ENST00000376646 LRRC8AQ8IWT6 810 aa1.09□□□□□ -2.24
VPS13A-206ENST00000376646 GAPTQ8N292 157 aa1.09□□□□□ -2.24
VPS13A-206ENST00000376646 CLHC1Q8NHS4 586 aa1.09□□□□□ -2.24
VPS13A-206ENST00000376646 DOK4Q8TEW6 326 aa1.09□□□□□ -2.24
VPS13A-206ENST00000376646 RILPQ96NA2 401 aa1.09□□□□□ -2.24
VPS13A-206ENST00000376646 QKIQ96PU8 341 aaKnown RBP eCLIP1.09□□□□□ -2.247e-6■■□□□ 13
VPS13A-206ENST00000376646 PRORYQ9H606 182 aa1.09□□□□□ -2.24
VPS13A-206ENST00000376646 PARP11Q9NR21 331 aa1.09□□□□□ -2.24
VPS13A-206ENST00000376646 STX18Q9P2W9 335 aaKnown RBP1.09□□□□□ -2.24
VPS13A-206ENST00000376646 UPK1AO00322 258 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 OR2A4O95047 310 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 GIMD1P0DJR0 217 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 TGM4P49221 684 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 HADHBP55084 474 aaKnown RBP1.08□□□□□ -2.24
VPS13A-206ENST00000376646 UBE2KP61086 200 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 GPR176Q14439 515 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 ELOCQ15369 112 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 CEACAM16Q2WEN9 425 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 IDNKQ5T6J7 187 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 LIN9Q5TKA1 542 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 UGT2A3Q6UWM9 527 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 ZDHHC22Q8N966 263 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 SLC26A10Q8NG04 563 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 ITLN2Q8WWU7 325 aaPredicted RBP1.08□□□□□ -2.24
VPS13A-206ENST00000376646 RBPMSQ93062 196 aaKnown RBP1.08□□□□□ -2.24
VPS13A-206ENST00000376646 FXYD5Q96DB9 178 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 C19orf60Q96EN9 201 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 ZNF75AQ96N20 296 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 OR2A7Q96R45 310 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 SEC22CQ9BRL7 303 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 C1orf50Q9BV19 199 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 API5Q9BZZ5 524 aaKnown RBP1.08□□□□□ -2.24
VPS13A-206ENST00000376646 ASB7Q9H672 318 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 TMBIM4Q9HC24 238 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 ABCB9Q9NP78 766 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 SDHAF3Q9NRP4 125 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 NXT1Q9UKK6 140 aaKnown RBP1.08□□□□□ -2.24
VPS13A-206ENST00000376646 INSIG2Q9Y5U4 225 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 ERCC6L2Q5T890 1561 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 LOC389332A0A1B0GUA5 103 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 IZUMO1RA6ND01 250 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 RBFOX3A6NFN3 312 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 OR2AT4A6NND4 320 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 FAM25EA8MYX2 175 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP1.08□□□□□ -2.24
VPS13A-206ENST00000376646 CXorf1O96002 111 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 IGHV1-46P01743 117 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 APOA1P02647 267 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 IGLV7-43P04211 117 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 OR5AC1P0C628 307 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 M6PRP20645 277 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 HLA-DMAP28067 261 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 XKP51811 444 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 SLC18A1P54219 525 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 DSTNP60981 165 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 MEF2CQ06413 473 aaPredicted RBP1.08□□□□□ -2.24
VPS13A-206ENST00000376646 TRDNQ13061 729 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 SSX1Q16384 188 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 ACTBL2Q562R1 376 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 TMEM136Q6ZRR5 245 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 TRMT10CQ7L0Y3 403 aaKnown RBP1.08□□□□□ -2.24
VPS13A-206ENST00000376646 DRAXINQ8NBI3 349 aaPredicted RBP1.08□□□□□ -2.24
VPS13A-206ENST00000376646 OR8G5Q8NG78 346 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 OR5H2Q8NGV7 314 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 OR51Q1Q8NH59 317 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 BLNKQ8WV28 456 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 FMC1Q96HJ9 113 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 CPB2Q96IY4 423 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 SRRQ9GZT4 340 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 NXF2Q9GZY0 626 aaKnown RBP1.08□□□□□ -2.24
VPS13A-206ENST00000376646 WDR55Q9H6Y2 383 aaPredicted RBP1.08□□□□□ -2.24
VPS13A-206ENST00000376646 PLEKHA1Q9HB21 404 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 OR2S2Q9NQN1 319 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 TMEM38BQ9NVV0 291 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 NLE1Q9NVX2 485 aaPredicted RBP1.08□□□□□ -2.24
VPS13A-206ENST00000376646 ZNF706Q9Y5V0 76 aaPredicted RBP1.08□□□□□ -2.24
VPS13A-206ENST00000376646 SLC22A7Q9Y694 548 aa1.08□□□□□ -2.24
VPS13A-206ENST00000376646 THADAQ6YHU6 1953 aa1.07□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms