RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 PNLIPRP3Q17RR3 467 aa6.49□□□□□ -1.37
VPS13A-202ENST00000357409 SKA3Q8IX90 412 aa6.49□□□□□ -1.37
VPS13A-202ENST00000357409 OR13C8Q8NGS7 320 aa6.49□□□□□ -1.37
VPS13A-202ENST00000357409 PRSS3P2Q8NHM4 247 aa6.49□□□□□ -1.37
VPS13A-202ENST00000357409 FGF11Q92914 225 aa6.49□□□□□ -1.37
VPS13A-202ENST00000357409 TAAR6Q96RI8 345 aa6.49□□□□□ -1.37
VPS13A-202ENST00000357409 PRO1933Q9H354 126 aa6.49□□□□□ -1.37
VPS13A-202ENST00000357409 PITPNC1Q9UKF7 332 aa6.49□□□□□ -1.37
VPS13A-202ENST00000357409 FAM208AQ9UK61 1670 aaKnown RBP6.49□□□□□ -1.37
VPS13A-202ENST00000357409 CXorf51AA0A1B0GTR3 108 aa6.49□□□□□ -1.37
VPS13A-202ENST00000357409 FAM53BQ14153 422 aa6.49□□□□□ -1.37
VPS13A-202ENST00000357409 GGTA1PQ4G0N0 100 aa6.49□□□□□ -1.37
VPS13A-202ENST00000357409 PTOV1Q86YD1 416 aa6.49□□□□□ -1.37
VPS13A-202ENST00000357409 OR4C16Q8NGL9 310 aa6.49□□□□□ -1.37
VPS13A-202ENST00000357409 SLC25A46Q96AG3 418 aa6.49□□□□□ -1.37
VPS13A-202ENST00000357409 PELI1Q96FA3 418 aa6.49□□□□□ -1.37
VPS13A-202ENST00000357409 ZNF416Q9BWM5 594 aa6.49□□□□□ -1.37
VPS13A-202ENST00000357409 PSMB2P49721 201 aa6.49□□□□□ -1.37
VPS13A-202ENST00000357409 NHLH1Q02575 133 aa6.49□□□□□ -1.37
VPS13A-202ENST00000357409 NHLH2Q02577 135 aa6.49□□□□□ -1.37
VPS13A-202ENST00000357409 SRSF4Q08170 494 aaKnown RBP6.49□□□□□ -1.37
VPS13A-202ENST00000357409 ACOT6Q3I5F7 207 aaPredicted RBP6.49□□□□□ -1.37
VPS13A-202ENST00000357409 SLC35D3Q5M8T2 416 aa6.49□□□□□ -1.37
VPS13A-202ENST00000357409 OR52L2PQ8NGH6 319 aa6.49□□□□□ -1.37
VPS13A-202ENST00000357409 RGP1Q92546 391 aaPredicted RBP6.49□□□□□ -1.37
VPS13A-202ENST00000357409 KCNK17Q96T54 332 aa6.49□□□□□ -1.37
VPS13A-202ENST00000357409 GPR3P46089 330 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 RANP62826 216 aaKnown RBP6.48□□□□□ -1.37
VPS13A-202ENST00000357409 ZIC1Q15915 447 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 NUP37Q8NFH4 326 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 FCRL1Q96LA6 429 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 CCL28Q9NRJ3 127 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 ZFP57Q9NU63 452 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 RYDENQ9NUL5 291 aaKnown RBP6.48□□□□□ -1.37
VPS13A-202ENST00000357409 HSF4Q9ULV5 492 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 KIF1AQ12756 1690 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 PPP5D1E7EU14 171 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 ZNF266Q14584 549 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 PCOLCEQ15113 449 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 VAMP3Q15836 100 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 VMA21Q3ZAQ7 101 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 PMS2CLQ68D20 193 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 KDF1Q8NAX2 398 aaPredicted RBP6.48□□□□□ -1.37
VPS13A-202ENST00000357409 NHLRC2Q8NBF2 726 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 OR13F1Q8NGS4 319 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 KLK15Q9H2R5 256 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 WSB1Q9Y6I7 421 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 FBLL1A6NHQ2 334 aaKnown RBP6.48□□□□□ -1.37
VPS13A-202ENST00000357409 ZNF26P17031 533 aaPredicted RBP6.48□□□□□ -1.37
VPS13A-202ENST00000357409 RPS27AP62979 156 aaKnown RBP6.48□□□□□ -1.37
VPS13A-202ENST00000357409 UBA52P62987 128 aaKnown RBP6.48□□□□□ -1.37
VPS13A-202ENST00000357409 CALHM3Q86XJ0 350 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 SMRP1Q8NCR6 262 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 A0A1W2PP11 408 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 LMX1BO60663 402 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 CXCL10P02778 98 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 DAOP14920 347 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 DYNLT3P51808 116 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 MMDQ15546 238 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 NSUN5P1Q3KNT7 163 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 SLC25A43Q8WUT9 341 aaPredicted RBP6.48□□□□□ -1.37
VPS13A-202ENST00000357409 TCEAL7Q9BRU2 100 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 PIGMQ9H3S5 423 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 CLN8Q9UBY8 286 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 ADGRB2O60241 1585 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 TMEM30CPA0ZSE6 113 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 UMAD1C9J7I0 102 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 PRSS1P07477 247 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 ROM1Q03395 351 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 TMEM211Q6ICI0 200 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 A0A0D9SG52 128 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 GAPDHP04406 335 aaKnown RBP6.48□□□□□ -1.37
VPS13A-202ENST00000357409 RAB32Q13637 225 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 PSG5Q15238 335 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 FHL5Q5TD97 284 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 TCTE3Q8IZS6 198 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 VKORC1L1Q8N0U8 176 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 GLMPQ8WWB7 406 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 HDGFL3Q9Y3E1 203 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 CDRT15L2A8MXV6 281 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 UPK3AO75631 287 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 TIAF1O95411 115 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 MRPS11P82912 194 aaKnown RBP6.48□□□□□ -1.37
VPS13A-202ENST00000357409 KRTCAP3Q53RY4 240 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 LRRC75AQ8NAA5 344 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 ZBTB44Q8NCP5 570 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 MARC2Q969Z3 335 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 ELF5Q9UKW6 265 aaPredicted RBP6.48□□□□□ -1.37
VPS13A-202ENST00000357409 LOC101059948A0A1B0GTJ6 334 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 A0A1B0GTQ1 180 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 CDC42EP2O14613 210 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 NCR3LG1Q68D85 454 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 TMEM251Q8N6I4 163 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 ISOC2Q96AB3 205 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 OR2M2Q96R28 347 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 OR2A5Q96R48 311 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 AAMDCQ9H7C9 122 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 DLL4Q9NR61 685 aa6.48□□□□□ -1.37
VPS13A-202ENST00000357409 COL14A1Q05707 1796 aaKnown RBP6.47□□□□□ -1.37
VPS13A-202ENST00000357409 PHOX2AO14813 284 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms