RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 RPS2P15880 293 aaKnown RBP13.09□□□□□ -0.31
COL17A1-201ENST00000353479 MGAT2Q10469 447 aa13.09□□□□□ -0.31
COL17A1-201ENST00000353479 Q3ZCU0 254 aa13.09□□□□□ -0.31
COL17A1-201ENST00000353479 SCARB1Q8WTV0 552 aa13.09□□□□□ -0.31
COL17A1-201ENST00000353479 GUCD1Q96NT3 240 aa13.09□□□□□ -0.31
COL17A1-201ENST00000353479 MSL2Q9HCI7 577 aa13.09□□□□□ -0.31
COL17A1-201ENST00000353479 TAAR5O14804 337 aa13.08□□□□□ -0.31
COL17A1-201ENST00000353479 FCGR3BO75015 233 aa13.08□□□□□ -0.31
COL17A1-201ENST00000353479 JTBO76095 146 aa13.08□□□□□ -0.31
COL17A1-201ENST00000353479 LYPD8Q6UX82 237 aa13.08□□□□□ -0.31
COL17A1-201ENST00000353479 SVBPQ8N300 66 aa13.08□□□□□ -0.31
COL17A1-201ENST00000353479 PPP1R1CQ8WVI7 109 aa13.08□□□□□ -0.31
COL17A1-201ENST00000353479 ASB5Q8WWX0 329 aa13.08□□□□□ -0.31
COL17A1-201ENST00000353479 SLC39A7Q92504 469 aa13.08□□□□□ -0.31
COL17A1-201ENST00000353479 WDFY2Q96P53 400 aa13.08□□□□□ -0.31
COL17A1-201ENST00000353479 SLC7A10Q9NS82 523 aa13.08□□□□□ -0.31
COL17A1-201ENST00000353479 ZFC3H1O60293 1989 aaKnown RBP13.08□□□□□ -0.32
COL17A1-201ENST00000353479 LIMS1P48059 325 aa13.08□□□□□ -0.32
COL17A1-201ENST00000353479 YIPF5Q969M3 257 aa13.08□□□□□ -0.32
COL17A1-201ENST00000353479 RCL1Q9Y2P8 373 aaKnown RBP13.08□□□□□ -0.32
COL17A1-201ENST00000353479 ST8SIA5O15466 376 aa13.08□□□□□ -0.32
COL17A1-201ENST00000353479 RSPO4Q2I0M5 234 aaPredicted RBP13.08□□□□□ -0.32
COL17A1-201ENST00000353479 VMA21Q3ZAQ7 101 aa13.08□□□□□ -0.32
COL17A1-201ENST00000353479 SOHLH1Q5JUK2 328 aa13.08□□□□□ -0.32
COL17A1-201ENST00000353479 TRAT1Q6PIZ9 186 aa13.08□□□□□ -0.32
COL17A1-201ENST00000353479 CHRNA10Q9GZZ6 450 aa13.08□□□□□ -0.32
COL17A1-201ENST00000353479 AK3Q9UIJ7 227 aa13.08□□□□□ -0.32
COL17A1-201ENST00000353479 NAA40Q86UY6 237 aa13.08□□□□□ -0.32
COL17A1-201ENST00000353479 C10orf35Q96D05 121 aa13.08□□□□□ -0.32
COL17A1-201ENST00000353479 AKIRIN1Q9H9L7 192 aaPredicted RBP13.08□□□□□ -0.32
COL17A1-201ENST00000353479 PLEKHA2Q9HB19 425 aa13.08□□□□□ -0.32
COL17A1-201ENST00000353479 CLEC18AA5D8T8 446 aa13.08□□□□□ -0.32
COL17A1-201ENST00000353479 GEMIN2O14893 280 aaKnown RBP13.08□□□□□ -0.32
COL17A1-201ENST00000353479 ATXN7O15265 892 aaPredicted RBP13.08□□□□□ -0.32
COL17A1-201ENST00000353479 ZNHIT1O43257 154 aa13.08□□□□□ -0.32
COL17A1-201ENST00000353479 NME2P1O60361 137 aa13.08□□□□□ -0.32
COL17A1-201ENST00000353479 IFI6P09912 130 aa13.08□□□□□ -0.32
COL17A1-201ENST00000353479 H2AFB1P0C5Y9 115 aa13.08□□□□□ -0.32
COL17A1-201ENST00000353479 DTYMKP23919 212 aa13.08□□□□□ -0.32
COL17A1-201ENST00000353479 KCNJ3P48549 501 aa13.08□□□□□ -0.32
COL17A1-201ENST00000353479 ZNF574Q6ZN55 896 aaPredicted RBP13.08□□□□□ -0.32
COL17A1-201ENST00000353479 CLEC18CQ8NCF0 446 aa13.08□□□□□ -0.32
COL17A1-201ENST00000353479 TMED6Q8WW62 240 aa13.08□□□□□ -0.32
COL17A1-201ENST00000353479 OR2D2Q9H210 308 aa13.08□□□□□ -0.32
COL17A1-201ENST00000353479 RLFQ13129 1914 aa13.08□□□□□ -0.32
COL17A1-201ENST00000353479 NDUFB6O95139 128 aa13.07□□□□□ -0.32
COL17A1-201ENST00000353479 MGST1P10620 155 aaKnown RBP13.07□□□□□ -0.32
COL17A1-201ENST00000353479 KCNIP4Q6PIL6 250 aa13.07□□□□□ -0.32
COL17A1-201ENST00000353479 PIK3IP1Q96FE7 263 aa13.07□□□□□ -0.32
COL17A1-201ENST00000353479 OR2J1Q9GZK6 312 aa13.07□□□□□ -0.32
COL17A1-201ENST00000353479 RYDENQ9NUL5 291 aaKnown RBP13.07□□□□□ -0.32
COL17A1-201ENST00000353479 PIKFYVEQ9Y2I7 2098 aa13.07□□□□□ -0.32
COL17A1-201ENST00000353479 LALBAP00709 142 aa13.07□□□□□ -0.32
COL17A1-201ENST00000353479 LILRB4Q8NHJ6 448 aa13.07□□□□□ -0.32
COL17A1-201ENST00000353479 CORO2AQ92828 525 aa13.07□□□□□ -0.32
COL17A1-201ENST00000353479 TRAV8-7A0A075B6U6 113 aa13.07□□□□□ -0.32
COL17A1-201ENST00000353479 PRR33A8MZF0 331 aa13.07□□□□□ -0.32
COL17A1-201ENST00000353479 AHRRA9YTQ3 701 aa13.07□□□□□ -0.32
COL17A1-201ENST00000353479 SULT1A3P0DMM9 295 aa13.07□□□□□ -0.32
COL17A1-201ENST00000353479 SULT1A4P0DMN0 295 aa13.07□□□□□ -0.32
COL17A1-201ENST00000353479 FAM27BQ5VT28 67 aa13.07□□□□□ -0.32
COL17A1-201ENST00000353479 THSD7BQ9C0I4 1608 aa13.07□□□□□ -0.32
COL17A1-201ENST00000353479 SVILO95425 2214 aa13.07□□□□□ -0.32
COL17A1-201ENST00000353479 SOCS1O15524 211 aa13.07□□□□□ -0.32
COL17A1-201ENST00000353479 TLE1Q04724 770 aa13.07□□□□□ -0.32
COL17A1-201ENST00000353479 GLDNQ6ZMI3 551 aaPredicted RBP13.07□□□□□ -0.32
COL17A1-201ENST00000353479 WDR89Q96FK6 387 aaPredicted RBP13.07□□□□□ -0.32
COL17A1-201ENST00000353479 SPTBP11277 2137 aa13.07□□□□□ -0.32
COL17A1-201ENST00000353479 A0A1W2PRD5 423 aa13.06□□□□□ -0.32
COL17A1-201ENST00000353479 A0A1W2PRF3 423 aa13.06□□□□□ -0.32
COL17A1-201ENST00000353479 A0A1W2PRM7 423 aa13.06□□□□□ -0.32
COL17A1-201ENST00000353479 MMP16P51512 607 aa13.06□□□□□ -0.32
COL17A1-201ENST00000353479 PSG4Q00888 419 aa13.06□□□□□ -0.32
COL17A1-201ENST00000353479 GNPNAT1Q96EK6 184 aaPredicted RBP13.06□□□□□ -0.32
COL17A1-201ENST00000353479 SAV1Q9H4B6 383 aaPredicted RBP13.06□□□□□ -0.32
COL17A1-201ENST00000353479 C17orf51A8MQB3 221 aa13.06□□□□□ -0.32
COL17A1-201ENST00000353479 HAND1O96004 215 aa13.06□□□□□ -0.32
COL17A1-201ENST00000353479 IGKV3-11P04433 115 aa13.06□□□□□ -0.32
COL17A1-201ENST00000353479 OR10J4P0C629 311 aa13.06□□□□□ -0.32
COL17A1-201ENST00000353479 RFLNBQ8N5W9 214 aa13.06□□□□□ -0.32
COL17A1-201ENST00000353479 ZDHHC22Q8N966 263 aa13.06□□□□□ -0.32
COL17A1-201ENST00000353479 POM121L2Q96KW2 1035 aa13.06□□□□□ -0.32
COL17A1-201ENST00000353479 OR6C3Q9NZP0 311 aa13.06□□□□□ -0.32
COL17A1-201ENST00000353479 RNF7Q9UBF6 113 aa13.06□□□□□ -0.32
COL17A1-201ENST00000353479 PRSS50Q9UI38 385 aa13.06□□□□□ -0.32
COL17A1-201ENST00000353479 ASXL3Q9C0F0 2248 aa13.06□□□□□ -0.32
COL17A1-201ENST00000353479 DSPPQ9NZW4 1301 aa13.06□□□□□ -0.32
COL17A1-201ENST00000353479 ABHD1Q96SE0 405 aa13.06□□□□□ -0.32
COL17A1-201ENST00000353479 WDR13Q9H1Z4 485 aa13.06□□□□□ -0.32
COL17A1-201ENST00000353479 PGA4P0DJD7 388 aa13.06□□□□□ -0.32
COL17A1-201ENST00000353479 PGA3P0DJD8 388 aa13.06□□□□□ -0.32
COL17A1-201ENST00000353479 RPS4Y1P22090 263 aaKnown RBP13.06□□□□□ -0.32
COL17A1-201ENST00000353479 LCN15Q6UWW0 184 aa13.06□□□□□ -0.32
COL17A1-201ENST00000353479 OR5AP2Q8NGF4 316 aa13.06□□□□□ -0.32
COL17A1-201ENST00000353479 ADAT3Q96EY9 351 aaPredicted RBP13.06□□□□□ -0.32
COL17A1-201ENST00000353479 MTCH1Q9NZJ7 389 aa13.06□□□□□ -0.32
COL17A1-201ENST00000353479 APC2O95996 2303 aa13.06□□□□□ -0.32
COL17A1-201ENST00000353479 MDFIC2A0A1B0GVS7 189 aa13.06□□□□□ -0.32
COL17A1-201ENST00000353479 ACKR3P25106 362 aa13.06□□□□□ -0.32
COL17A1-201ENST00000353479 LPAR6P43657 344 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms