RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 PTGFRP43088 359 aa7.81□□□□□ -1.16
USP4-202ENST00000351842 CAPZA1P52907 286 aa7.81□□□□□ -1.16
USP4-202ENST00000351842 GNG3P63215 75 aa7.81□□□□□ -1.16
USP4-202ENST00000351842 PRB3Q04118 309 aaPredicted RBP7.81□□□□□ -1.16
USP4-202ENST00000351842 C2orf76Q3KRA6 126 aa7.81□□□□□ -1.16
USP4-202ENST00000351842 KRTAP27-1Q3LI81 207 aa7.81□□□□□ -1.16
USP4-202ENST00000351842 PRR18Q8N4B5 295 aa7.81□□□□□ -1.16
USP4-202ENST00000351842 EMG1Q92979 244 aaKnown RBP7.81□□□□□ -1.16
USP4-202ENST00000351842 SORCS2Q96PQ0 1159 aa7.81□□□□□ -1.16
USP4-202ENST00000351842 WACQ9BTA9 647 aa7.81□□□□□ -1.16
USP4-202ENST00000351842 TBC1D24Q9ULP9 559 aa7.81□□□□□ -1.16
USP4-202ENST00000351842 IGKV1-12A0A0C4DH73 117 aa7.8□□□□□ -1.16
USP4-202ENST00000351842 C17orf100A8MU93 164 aa7.8□□□□□ -1.16
USP4-202ENST00000351842 IGKV1D-12P01611 117 aa7.8□□□□□ -1.16
USP4-202ENST00000351842 ZNF250P15622 560 aa7.8□□□□□ -1.16
USP4-202ENST00000351842 GLRA1P23415 457 aa7.8□□□□□ -1.16
USP4-202ENST00000351842 TNFSF4P23510 183 aa7.8□□□□□ -1.16
USP4-202ENST00000351842 EDDM3AQ14507 147 aa7.8□□□□□ -1.16
USP4-202ENST00000351842 OR51T1Q8NGJ9 327 aa7.8□□□□□ -1.16
USP4-202ENST00000351842 HAVCR2Q8TDQ0 301 aa7.8□□□□□ -1.16
USP4-202ENST00000351842 MAFIPQ8WZ33 124 aa7.8□□□□□ -1.16
USP4-202ENST00000351842 OR5P3Q8WZ94 311 aa7.8□□□□□ -1.16
USP4-202ENST00000351842 SPSB4Q96A44 273 aa7.8□□□□□ -1.16
USP4-202ENST00000351842 SLC25A46Q96AG3 418 aa7.8□□□□□ -1.16
USP4-202ENST00000351842 MRPL15Q9P015 296 aaKnown RBP7.8□□□□□ -1.16
USP4-202ENST00000351842 ZNF469Q96JG9 3925 aaPredicted RBP7.8□□□□□ -1.16
USP4-202ENST00000351842 IQCF6A8MYZ5 107 aa7.8□□□□□ -1.16
USP4-202ENST00000351842 TRAPPC2LH3BP13 241 aa7.8□□□□□ -1.16
USP4-202ENST00000351842 PDCD5O14737 125 aa7.8□□□□□ -1.16
USP4-202ENST00000351842 PPIHO43447 177 aaKnown RBP7.8□□□□□ -1.16
USP4-202ENST00000351842 IL1AP01583 271 aa7.8□□□□□ -1.16
USP4-202ENST00000351842 IGHV3-13P01766 116 aa7.8□□□□□ -1.16
USP4-202ENST00000351842 MTNR1BP49286 362 aa7.8□□□□□ -1.16
USP4-202ENST00000351842 P2RX3P56373 397 aa7.8□□□□□ -1.16
USP4-202ENST00000351842 CEACAM21Q3KPI0 293 aa7.8□□□□□ -1.16
USP4-202ENST00000351842 AGAP6Q5VW22 663 aa7.8□□□□□ -1.16
USP4-202ENST00000351842 UBASH3BQ8TF42 649 aa7.8□□□□□ -1.16
USP4-202ENST00000351842 CREB3L1Q96BA8 519 aa7.8□□□□□ -1.16
USP4-202ENST00000351842 WIPF3A6NGB9 483 aa7.8□□□□□ -1.16
USP4-202ENST00000351842 FUT6P51993 359 aa7.8□□□□□ -1.16
USP4-202ENST00000351842 AKAP14Q86UN6 197 aa7.8□□□□□ -1.16
USP4-202ENST00000351842 ZNF525Q8N782 197 aa7.8□□□□□ -1.16
USP4-202ENST00000351842 SOSTQ9BQB4 213 aa7.8□□□□□ -1.16
USP4-202ENST00000351842 ABCB10Q9NRK6 738 aa7.8□□□□□ -1.16
USP4-202ENST00000351842 MTCH1Q9NZJ7 389 aa7.8□□□□□ -1.16
USP4-202ENST00000351842 F8P00451 2351 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 A0A1B0GW55 424 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 UBE2QL1A1L167 161 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 GEMIN2O14893 280 aaKnown RBP7.79□□□□□ -1.16
USP4-202ENST00000351842 HLA-DQB1P01920 261 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 RAF1P04049 648 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 ERCC1P07992 297 aaPredicted RBP7.79□□□□□ -1.16
USP4-202ENST00000351842 DUX4L2P0CJ85 424 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 DUX4L3P0CJ86 424 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 DUX4L4P0CJ87 422 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 DUX4L5P0CJ88 424 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 DUX4L6P0CJ89 424 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 DUX4L7P0CJ90 424 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 IRF2P14316 349 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 CCL1P22362 96 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 COL8A2P25067 703 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 TNFSF8P32971 234 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 ATP5J2P56134 94 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 IL18Q14116 193 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 ZNF79Q15937 498 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 MOGAT2Q3SYC2 334 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 OLFML2AQ68BL7 652 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 DUX4L9Q6RFH8 374 aaPredicted RBP7.79□□□□□ -1.16
USP4-202ENST00000351842 UNQ9370/PRO34162Q6UXP9 181 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 LURAP1LQ8IV03 231 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 FGFRL1Q8N441 504 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 POC5Q8NA72 575 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 MEGF10Q96KG7 1140 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 DUX4Q9UBX2 424 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 OR5V1Q9UGF6 321 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 ZNF391Q9UJN7 358 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 ST3GAL6Q9Y274 331 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 CD8AP01732 235 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 CSN2P05814 226 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 EIF4EP06730 217 aaKnown RBP7.79□□□□□ -1.16
USP4-202ENST00000351842 MGMTP16455 207 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 EGR1P18146 543 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 DEFA1P59665 94 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 DEFA3P59666 94 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 PDZK1IP1Q13113 114 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 LTC4SQ16873 150 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 MST1LQ2TV78 715 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 C5orf24Q7Z6I8 188 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 ZNF295-AS1Q8N0V1 137 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 RPS4Y2Q8TD47 263 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 TMEM59Q9BXS4 323 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 SRRQ9GZT4 340 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 EXTL2Q9UBQ6 330 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 MPC1Q9Y5U8 109 aa7.79□□□□□ -1.16
USP4-202ENST00000351842 TRAV18A0A075B6X5 111 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 A0A0G2JK05 382 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 B9A039 149 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 AIPO00170 330 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 IGHV3-7P01780 117 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 GYPAP02724 150 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms