RNA–Protein interactions for RNA: ENST00000343765.6

VIPAS39-202, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,761 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-202ENST00000343765 ZNF703Q9H7S9 590 aaPredicted RBP12.9□□□□□ -0.34
VIPAS39-202ENST00000343765 ZC4H2Q9NQZ6 224 aa12.9□□□□□ -0.34
VIPAS39-202ENST00000343765 TRBV6-7A0A0A0MS04 114 aa12.89□□□□□ -0.35
VIPAS39-202ENST00000343765 MMP7P09237 267 aaPredicted RBP12.89□□□□□ -0.35
VIPAS39-202ENST00000343765 DEFA5Q01523 94 aa12.89□□□□□ -0.35
VIPAS39-202ENST00000343765 PDZK1IP1Q13113 114 aa12.89□□□□□ -0.35
VIPAS39-202ENST00000343765 PPA1Q15181 289 aa12.89□□□□□ -0.35
VIPAS39-202ENST00000343765 OR1C1Q15619 314 aa12.89□□□□□ -0.35
VIPAS39-202ENST00000343765 IAH1Q2TAA2 248 aaPredicted RBP12.89□□□□□ -0.35
VIPAS39-202ENST00000343765 KRTAP27-1Q3LI81 207 aa12.89□□□□□ -0.35
VIPAS39-202ENST00000343765 PDSS1Q5T2R2 415 aa12.89□□□□□ -0.35
VIPAS39-202ENST00000343765 SLC22A25Q6T423 547 aa12.89□□□□□ -0.35
VIPAS39-202ENST00000343765 CALHM1Q8IU99 346 aa12.89□□□□□ -0.35
VIPAS39-202ENST00000343765 SGPP2Q8IWX5 399 aa12.89□□□□□ -0.35
VIPAS39-202ENST00000343765 SPERTQ8NA61 448 aa12.89□□□□□ -0.35
VIPAS39-202ENST00000343765 FAM173AQ9BQD7 235 aa12.89□□□□□ -0.35
VIPAS39-202ENST00000343765 ZPBPQ9BS86 351 aa12.89□□□□□ -0.35
VIPAS39-202ENST00000343765 ATF4P18848 351 aaPredicted RBP12.89□□□□□ -0.35
VIPAS39-202ENST00000343765 LHX2P50458 406 aa12.89□□□□□ -0.35
VIPAS39-202ENST00000343765 RBM39Q14498 530 aaKnown RBP12.89□□□□□ -0.35
VIPAS39-202ENST00000343765 TMEM42Q69YG0 159 aa12.89□□□□□ -0.35
VIPAS39-202ENST00000343765 COL27A1Q8IZC6 1860 aaPredicted RBP12.89□□□□□ -0.35
VIPAS39-202ENST00000343765 EIF4E3Q8N5X7 224 aaKnown RBP12.89□□□□□ -0.35
VIPAS39-202ENST00000343765 CYTL1Q9NRR1 136 aa12.89□□□□□ -0.35
VIPAS39-202ENST00000343765 C1orf123Q9NWV4 160 aa12.89□□□□□ -0.35
VIPAS39-202ENST00000343765 ZNF816-ZNF321PA0A0X1KG74 233 aa12.88□□□□□ -0.35
VIPAS39-202ENST00000343765 CA11O75493 328 aa12.88□□□□□ -0.35
VIPAS39-202ENST00000343765 SCGB1D2O95969 90 aa12.88□□□□□ -0.35
VIPAS39-202ENST00000343765 FUT6P51993 359 aa12.88□□□□□ -0.35
VIPAS39-202ENST00000343765 PIGPP57054 158 aa12.88□□□□□ -0.35
VIPAS39-202ENST00000343765 SURF2Q15527 256 aaPredicted RBP12.88□□□□□ -0.35
VIPAS39-202ENST00000343765 PHLDA2Q53GA4 152 aa12.88□□□□□ -0.35
VIPAS39-202ENST00000343765 SLC25A26Q70HW3 274 aa12.88□□□□□ -0.35
VIPAS39-202ENST00000343765 BAP18Q8IXM2 172 aa12.88□□□□□ -0.35
VIPAS39-202ENST00000343765 PAPOLGQ9BWT3 736 aaKnown RBP12.88□□□□□ -0.35
VIPAS39-202ENST00000343765 PRRG4Q9BZD6 226 aa12.88□□□□□ -0.35
VIPAS39-202ENST00000343765 OR7C1O76099 320 aaPredicted RBP12.88□□□□□ -0.35
VIPAS39-202ENST00000343765 NPBWR2P48146 333 aa12.88□□□□□ -0.35
VIPAS39-202ENST00000343765 PLGLB1Q02325 96 aa12.88□□□□□ -0.35
VIPAS39-202ENST00000343765 DDA1Q9BW61 102 aa12.88□□□□□ -0.35
VIPAS39-202ENST00000343765 FAM117AQ9C073 453 aa12.88□□□□□ -0.35
VIPAS39-202ENST00000343765 BCO1Q9HAY6 547 aa12.88□□□□□ -0.35
VIPAS39-202ENST00000343765 NECAP2Q9NVZ3 263 aa12.88□□□□□ -0.35
VIPAS39-202ENST00000343765 CRIM1Q9NZV1 1036 aa12.88□□□□□ -0.35
VIPAS39-202ENST00000343765 B4GALT7Q9UBV7 327 aa12.88□□□□□ -0.35
VIPAS39-202ENST00000343765 C5orf49A4QMS7 147 aa12.87□□□□□ -0.35
VIPAS39-202ENST00000343765 F8VVB4 439 aa12.87□□□□□ -0.35
VIPAS39-202ENST00000343765 F8VWA3 439 aa12.87□□□□□ -0.35
VIPAS39-202ENST00000343765 RRP8O43159 456 aaKnown RBP12.87□□□□□ -0.35
VIPAS39-202ENST00000343765 CD79AP11912 226 aa12.87□□□□□ -0.35
VIPAS39-202ENST00000343765 ZNF528Q3MIS6 628 aa12.87□□□□□ -0.35
VIPAS39-202ENST00000343765 SMUG1Q53HV7 270 aa12.87□□□□□ -0.35
VIPAS39-202ENST00000343765 DBX2Q6ZNG2 339 aa12.87□□□□□ -0.35
VIPAS39-202ENST00000343765 ZNF611Q8N823 705 aa12.87□□□□□ -0.35
VIPAS39-202ENST00000343765 OR56B2PQ8NGI1 322 aa12.87□□□□□ -0.35
VIPAS39-202ENST00000343765 MRPL24Q96A35 216 aaKnown RBP12.87□□□□□ -0.35
VIPAS39-202ENST00000343765 TTTY12Q9BZ98 90 aa12.87□□□□□ -0.35
VIPAS39-202ENST00000343765 SPRY4Q9C004 299 aa12.87□□□□□ -0.35
VIPAS39-202ENST00000343765 ZNF442Q9H7R0 627 aa12.87□□□□□ -0.35
VIPAS39-202ENST00000343765 HSF4Q9ULV5 492 aa12.87□□□□□ -0.35
VIPAS39-202ENST00000343765 CTSDP07339 412 aaPredicted RBP12.87□□□□□ -0.35
VIPAS39-202ENST00000343765 CLDN18P56856 261 aa12.87□□□□□ -0.35
VIPAS39-202ENST00000343765 OR8B8Q15620 311 aa12.87□□□□□ -0.35
VIPAS39-202ENST00000343765 PLEKHN1Q494U1 663 aaPredicted RBP12.87□□□□□ -0.35
VIPAS39-202ENST00000343765 ABCA11PQ4W5N1 156 aa12.87□□□□□ -0.35
VIPAS39-202ENST00000343765 DCAF10Q5QP82 559 aa12.87□□□□□ -0.35
VIPAS39-202ENST00000343765 STOML3Q8TAV4 291 aa12.87□□□□□ -0.35
VIPAS39-202ENST00000343765 RGCCQ9H4X1 137 aa12.87□□□□□ -0.35
VIPAS39-202ENST00000343765 PARPBPQ9NWS1 579 aa12.87□□□□□ -0.35
VIPAS39-202ENST00000343765 ZNF629Q9UEG4 869 aaPredicted RBP12.87□□□□□ -0.35
VIPAS39-202ENST00000343765 IL17BQ9UHF5 180 aa12.87□□□□□ -0.35
VIPAS39-202ENST00000343765 EDARQ9UNE0 448 aa12.87□□□□□ -0.35
VIPAS39-202ENST00000343765 MRPS18CQ9Y3D5 142 aaKnown RBP12.87□□□□□ -0.35
VIPAS39-202ENST00000343765 ZNF503-AS2A6NEH8 195 aa12.86□□□□□ -0.35
VIPAS39-202ENST00000343765 CRYM-AS1A6NIL9 109 aa12.86□□□□□ -0.35
VIPAS39-202ENST00000343765 SYNGR4O95473 234 aa12.86□□□□□ -0.35
VIPAS39-202ENST00000343765 ZNF728P0DKX0 622 aa12.86□□□□□ -0.35
VIPAS39-202ENST00000343765 FCGR2CP31995 323 aa12.86□□□□□ -0.35
VIPAS39-202ENST00000343765 TMEM164Q5U3C3 297 aa12.86□□□□□ -0.35
VIPAS39-202ENST00000343765 OR5L1Q8NGL2 311 aa12.86□□□□□ -0.35
VIPAS39-202ENST00000343765 MEMO1Q9Y316 297 aa12.86□□□□□ -0.35
VIPAS39-202ENST00000343765 LSM5Q9Y4Y9 91 aaKnown RBP12.86□□□□□ -0.35
VIPAS39-202ENST00000343765 TERTO14746 1132 aaKnown RBP12.86□□□□□ -0.35
VIPAS39-202ENST00000343765 XRCC2O43543 280 aa12.86□□□□□ -0.35
VIPAS39-202ENST00000343765 SP9P0CG40 484 aa12.86□□□□□ -0.35
VIPAS39-202ENST00000343765 PET100P0DJ07 73 aa12.86□□□□□ -0.35
VIPAS39-202ENST00000343765 MALLQ13021 153 aa12.86□□□□□ -0.35
VIPAS39-202ENST00000343765 GGNBP1Q5YKI7 109 aa12.86□□□□□ -0.35
VIPAS39-202ENST00000343765 OR2A2Q6IF42 318 aa12.86□□□□□ -0.35
VIPAS39-202ENST00000343765 DHRS13Q6UX07 377 aa12.86□□□□□ -0.35
VIPAS39-202ENST00000343765 C5orf24Q7Z6I8 188 aa12.86□□□□□ -0.35
VIPAS39-202ENST00000343765 MARC2Q969Z3 335 aa12.86□□□□□ -0.35
VIPAS39-202ENST00000343765 LRRC46Q96FV0 321 aa12.86□□□□□ -0.35
VIPAS39-202ENST00000343765 C1QTNF5Q9BXJ0 243 aa12.86□□□□□ -0.35
VIPAS39-202ENST00000343765 ZNF391Q9UJN7 358 aa12.86□□□□□ -0.35
VIPAS39-202ENST00000343765 HSPB6O14558 160 aa12.86□□□□□ -0.35
VIPAS39-202ENST00000343765 OR5AC1P0C628 307 aa12.86□□□□□ -0.35
VIPAS39-202ENST00000343765 RCC1P18754 421 aaPredicted RBP12.86□□□□□ -0.35
VIPAS39-202ENST00000343765 DTYMKP23919 212 aa12.86□□□□□ -0.35
VIPAS39-202ENST00000343765 ZNF100Q8IYN0 542 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms