RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 RGS13O14921 159 aa7.75□□□□□ -1.17
RTN3-202ENST00000339997 CD46P15529 392 aa7.75□□□□□ -1.17
RTN3-202ENST00000339997 ZNF25P17030 456 aaPredicted RBP7.75□□□□□ -1.17
RTN3-202ENST00000339997 CD200P41217 278 aa7.75□□□□□ -1.17
RTN3-202ENST00000339997 TGIF1Q15583 401 aa7.75□□□□□ -1.17
RTN3-202ENST00000339997 CLPPQ16740 277 aaPredicted RBP7.75□□□□□ -1.17
RTN3-202ENST00000339997 FAM78BQ5VT40 261 aa7.75□□□□□ -1.17
RTN3-202ENST00000339997 ZPLD1Q8TCW7 415 aa7.75□□□□□ -1.17
RTN3-202ENST00000339997 SMIM12Q96EX1 92 aa7.75□□□□□ -1.17
RTN3-202ENST00000339997 TSPAN32Q96QS1 320 aa7.75□□□□□ -1.17
RTN3-202ENST00000339997 GPHA2Q96T91 129 aa7.75□□□□□ -1.17
RTN3-202ENST00000339997 GNB4Q9HAV0 340 aa7.75□□□□□ -1.17
RTN3-202ENST00000339997 DOK5Q9P104 306 aa7.75□□□□□ -1.17
RTN3-202ENST00000339997 RNF24Q9Y225 148 aa7.75□□□□□ -1.17
RTN3-202ENST00000339997 MMACHCQ9Y4U1 282 aa7.75□□□□□ -1.17
RTN3-202ENST00000339997 AHDC1Q5TGY3 1603 aaPredicted RBP7.75□□□□□ -1.17
RTN3-202ENST00000339997 CLDN34H7C241 214 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 EPPINO95925 133 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 CXCL2P19875 107 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 C5orf46Q6UWT4 87 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 RHOVQ96L33 236 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 LAT2Q9GZY6 243 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 TIMM10BQ9Y5J6 103 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 ANKRD20A5PA0PJZ0 165 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 DBX1A6NMT0 343 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 C4orf47A7E2U8 309 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 HIST1H1DP16402 221 aaKnown RBP7.74□□□□□ -1.17
RTN3-202ENST00000339997 ZBTB25P24278 435 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 ID4P47928 161 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 RAB1AP62820 205 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 RNASEKQ6P5S7 137 aaKnown RBP7.74□□□□□ -1.17
RTN3-202ENST00000339997 CLEC18BQ6UXF7 455 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 RABEPKQ7Z6M1 372 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 OR5M9Q8NGP3 310 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 LPAR5Q9H1C0 372 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 P4HTMQ9NXG6 502 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 RASL12Q9NYN1 266 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 PAM16Q9Y3D7 125 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 CCL27Q9Y4X3 112 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 H0YIG0 161 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 SULT1A3P0DMM9 295 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 SULT1A4P0DMN0 295 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 NOVA1P51513 510 aaKnown RBP7.74□□□□□ -1.17
RTN3-202ENST00000339997 SLC35B1P78383 322 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 MRPS21P82921 87 aaKnown RBP7.74□□□□□ -1.17
RTN3-202ENST00000339997 CD226Q15762 336 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 DCAF12Q5T6F0 453 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 CMTM3Q96MX0 182 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 WFIKKN1Q96NZ8 548 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 BARX1Q9HBU1 254 aaPredicted RBP7.74□□□□□ -1.17
RTN3-202ENST00000339997 DNAJB12Q9NXW2 375 aaKnown RBP7.74□□□□□ -1.17
RTN3-202ENST00000339997 CHD7Q9P2D1 2997 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 AP4M1O00189 453 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 POU2F2P09086 479 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 PTGFRP43088 359 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 EMC4Q5J8M3 183 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 WIPI1Q5MNZ9 446 aaPredicted RBP7.74□□□□□ -1.17
RTN3-202ENST00000339997 ZNF774Q6NX45 483 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 TMEM65Q6PI78 240 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 Q6ZNB5 142 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 VN1R4Q7Z5H5 301 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 ARRDC1Q8N5I2 433 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 M1APQ8TC57 530 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 S1PR3Q99500 378 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 LRFN3Q9BTN0 628 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 TECRQ9NZ01 308 aaKnown RBP7.74□□□□□ -1.17
RTN3-202ENST00000339997 FLRT3Q9NZU0 649 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 CACNG5Q9UF02 275 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 CBY1Q9Y3M2 126 aa7.74□□□□□ -1.17
RTN3-202ENST00000339997 A0A1W2PP11 408 aa7.73□□□□□ -1.17
RTN3-202ENST00000339997 NCBP2LA6PVI3 153 aaKnown RBP7.73□□□□□ -1.17
RTN3-202ENST00000339997 FCN1O00602 326 aa7.73□□□□□ -1.17
RTN3-202ENST00000339997 INHBBP09529 407 aa7.73□□□□□ -1.17
RTN3-202ENST00000339997 CA6P23280 308 aa7.73□□□□□ -1.17
RTN3-202ENST00000339997 GALR1P47211 349 aa7.73□□□□□ -1.17
RTN3-202ENST00000339997 RAC1P63000 192 aa7.73□□□□□ -1.17
RTN3-202ENST00000339997 NAT6Q93015 286 aa7.73□□□□□ -1.17
RTN3-202ENST00000339997 HDHD3Q9BSH5 251 aaPredicted RBP7.73□□□□□ -1.17
RTN3-202ENST00000339997 ABHD14AQ9BUJ0 271 aa7.73□□□□□ -1.17
RTN3-202ENST00000339997 MENTQ9BUN1 341 aa7.73□□□□□ -1.17
RTN3-202ENST00000339997 SARGQ9BW04 601 aa7.73□□□□□ -1.17
RTN3-202ENST00000339997 ACACAQ13085 2346 aa7.73□□□□□ -1.17
RTN3-202ENST00000339997 MAP1LC3B2A6NCE7 125 aa7.73□□□□□ -1.17
RTN3-202ENST00000339997 ZGLP1P0C6A0 271 aa7.73□□□□□ -1.17
RTN3-202ENST00000339997 USF1P22415 310 aaPredicted RBP7.73□□□□□ -1.17
RTN3-202ENST00000339997 AMTP48728 403 aa7.73□□□□□ -1.17
RTN3-202ENST00000339997 FAM209BQ5JX69 171 aa7.73□□□□□ -1.17
RTN3-202ENST00000339997 DMKNQ6E0U4 476 aaPredicted RBP7.73□□□□□ -1.17
RTN3-202ENST00000339997 C8orf82Q6P1X6 216 aaPredicted RBP7.73□□□□□ -1.17
RTN3-202ENST00000339997 OR2C3Q8N628 320 aa7.73□□□□□ -1.17
RTN3-202ENST00000339997 MORN4Q8NDC4 146 aa7.73□□□□□ -1.17
RTN3-202ENST00000339997 OR1K1Q8NGR3 316 aa7.73□□□□□ -1.17
RTN3-202ENST00000339997 GPR137Q96N19 417 aa7.73□□□□□ -1.17
RTN3-202ENST00000339997 NDFIP1Q9BT67 221 aa7.73□□□□□ -1.17
RTN3-202ENST00000339997 MAP1LC3BQ9GZQ8 125 aa7.73□□□□□ -1.17
RTN3-202ENST00000339997 PKDREJQ9NTG1 2253 aa7.73□□□□□ -1.17
RTN3-202ENST00000339997 PAPPA2Q9BXP8 1791 aa7.73□□□□□ -1.17
RTN3-202ENST00000339997 TRBV5-3A0A0A0MS03 114 aa7.73□□□□□ -1.17
RTN3-202ENST00000339997 ACAA1P09110 424 aaPredicted RBP7.73□□□□□ -1.17
RTN3-202ENST00000339997 ECI1P42126 302 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms