RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 RHOVQ96L33 236 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 RASL12Q9NYN1 266 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 PTGFRP43088 359 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 ERVFRD-1P60508 538 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 LMO7Q8WWI1 1683 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 ARHGEF28Q8N1W1 1705 aaKnown RBP11.54□□□□□ -0.56
USP47-202ENST00000339865 TMEM210A6NLX4 147 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 COL6A6A6NMZ7 2263 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 DEFB108AA8MXU0 73 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 GABRA1P14867 456 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 RBM11P57052 281 aaKnown RBP11.54□□□□□ -0.56
USP47-202ENST00000339865 PNRC1Q12796 327 aaPredicted RBP11.54□□□□□ -0.56
USP47-202ENST00000339865 DUSP5Q16690 384 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 C19orf54Q5BKX5 351 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 HES3Q5TGS1 186 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 C10orf71Q711Q0 1435 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 CBLN2Q8IUK8 224 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 OR5M9Q8NGP3 310 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 TM4SF18Q96CE8 201 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 JAM3Q9BX67 310 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 FGF2P09038 288 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 METAP1P53582 386 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 HLA-DRB3P79483 266 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 IL24Q13007 206 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 ELAVL1Q15717 326 aaKnown RBP11.54□□□□□ -0.56
USP47-202ENST00000339865 LYG1Q8N1E2 194 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 CBARPQ8N350 705 aaPredicted RBP11.54□□□□□ -0.56
USP47-202ENST00000339865 TMEM229BQ8NBD8 167 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 MOB4Q9Y3A3 225 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 N4BP2Q86UW6 1770 aaPredicted RBP11.54□□□□□ -0.56
USP47-202ENST00000339865 MYF5P13349 255 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 COX6B1P14854 86 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 RTP5Q14D33 572 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 TMEM215Q68D42 235 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.54□□□□□ -0.56
USP47-202ENST00000339865 FZD9O00144 591 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 TSPAN12O95859 305 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 ST3GAL2Q16842 350 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 IZUMO4Q1ZYL8 232 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 C19orf48Q6RUI8 117 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 SEZ6L2Q6UXD5 910 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 RPS4Y2Q8TD47 263 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 KTI12Q96EK9 354 aaPredicted RBP11.54□□□□□ -0.56
USP47-202ENST00000339865 PELI1Q96FA3 418 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 RBPJLQ9UBG7 517 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 R4GMQ9 66 aa11.54□□□□□ -0.56
USP47-202ENST00000339865 IGHV3OR16-12A0A075B7B8 117 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 A0A1W2PN81 502 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 A0A1W2PNR3 127 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 CRYAAP02489 173 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 VMA21Q3ZAQ7 101 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 FAM209BQ5JX69 171 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 OR2Z1Q8NG97 314 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 SIRT5Q9NXA8 310 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 IGSF23A1L1A6 192 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 IL2RAP01589 272 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 FCRL6Q6DN72 434 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 BEND2Q8NDZ0 799 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 KCNE4Q8WWG9 221 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 NEIL1Q96FI4 390 aaPredicted RBP11.53□□□□□ -0.56
USP47-202ENST00000339865 TMED3Q9Y3Q3 217 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 SLIT2O94813 1529 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 NFAT5O94916 1531 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 SPRY3O43610 288 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 DHRS3O75911 302 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 IGHEP01854 428 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 UBE2L3P68036 154 aaKnown RBP11.53□□□□□ -0.56
USP47-202ENST00000339865 MRM1Q6IN84 353 aaKnown RBP11.53□□□□□ -0.56
USP47-202ENST00000339865 LINC00299Q6ZSB3 139 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 A0A1W2PR80 420 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 ZNF506Q5JVG8 444 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 LMO3Q8TAP4 145 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 PIK3IP1Q96FE7 263 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 TREX1Q9NSU2 369 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 ZNF391Q9UJN7 358 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 M0R296 226 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 SMPD2O60906 423 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 IGHV3-13P01766 116 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 IGHV3-7P01780 117 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 INSM1Q01101 510 aaPredicted RBP11.53□□□□□ -0.56
USP47-202ENST00000339865 PDCD1Q15116 288 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 C12orf54Q6X4T0 127 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 TMEM136Q6ZRR5 245 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 PRRX2Q99811 253 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 F11RQ9Y624 299 aaKnown RBP11.53□□□□□ -0.56
USP47-202ENST00000339865 HAND1O96004 215 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 BSGP35613 385 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 SPANXN1Q5VSR9 72 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 GLDNQ6ZMI3 551 aaPredicted RBP11.53□□□□□ -0.56
USP47-202ENST00000339865 ACER3Q9NUN7 267 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 SLC35E2P0CK97 266 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 SLC35B1P78383 322 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 TMEM95Q3KNT9 176 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 SLC25A35Q3KQZ1 300 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 RNF133Q8WVZ7 376 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 OIT3Q8WWZ8 545 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 ORAI1Q96D31 301 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 RAB40CQ96S21 281 aa11.53□□□□□ -0.56
USP47-202ENST00000339865 CACNA1GO43497 2377 aa11.52□□□□□ -0.56
USP47-202ENST00000339865 ECM29Q5VYK3 1845 aa11.52□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms