RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 PARP11Q9NR21 331 aa12.99□□□□□ -0.33
TCOF1-201ENST00000323668 C7orf77A4D0Y5 90 aa12.98□□□□□ -0.33
TCOF1-201ENST00000323668 AQP7P3A6NL99 342 aa12.98□□□□□ -0.33
TCOF1-201ENST00000323668 C17orf51A8MQB3 221 aa12.98□□□□□ -0.33
TCOF1-201ENST00000323668 A8MXE2 369 aa12.98□□□□□ -0.33
TCOF1-201ENST00000323668 PRR32B1ATL7 298 aa12.98□□□□□ -0.33
TCOF1-201ENST00000323668 H7BYZ3 331 aa12.98□□□□□ -0.33
TCOF1-201ENST00000323668 HMGB3O15347 200 aaKnown RBP12.98□□□□□ -0.33
TCOF1-201ENST00000323668 SPP1P10451 314 aa12.98□□□□□ -0.33
TCOF1-201ENST00000323668 PRSS12P56730 875 aa12.98□□□□□ -0.33
TCOF1-201ENST00000323668 CABLES2Q9BTV7 478 aa12.98□□□□□ -0.33
TCOF1-201ENST00000323668 UBE2ZQ9H832 354 aaPredicted RBP12.98□□□□□ -0.33
TCOF1-201ENST00000323668 PPP1R3CQ9UQK1 317 aa12.98□□□□□ -0.33
TCOF1-201ENST00000323668 AMDHD2Q9Y303 409 aa12.98□□□□□ -0.33
TCOF1-201ENST00000323668 SCN5AQ14524 2016 aa12.98□□□□□ -0.33
TCOF1-201ENST00000323668 A0A087WV48 116 aa12.98□□□□□ -0.33
TCOF1-201ENST00000323668 C3orf85A0A1B0GTC6 90 aa12.98□□□□□ -0.33
TCOF1-201ENST00000323668 ZNF732B4DXR9 585 aa12.98□□□□□ -0.33
TCOF1-201ENST00000323668 CD46P15529 392 aa12.98□□□□□ -0.33
TCOF1-201ENST00000323668 RAB4BP61018 213 aa12.98□□□□□ -0.33
TCOF1-201ENST00000323668 LIAT1Q6ZQX7 453 aa12.98□□□□□ -0.33
TCOF1-201ENST00000323668 OR5C1Q8NGR4 320 aa12.98□□□□□ -0.33
TCOF1-201ENST00000323668 FLVCR1-AS1Q8TAF5 88 aa12.98□□□□□ -0.33
TCOF1-201ENST00000323668 GAR1Q9NY12 217 aaKnown RBP12.98□□□□□ -0.33
TCOF1-201ENST00000323668 FAM166BA8MTA8 275 aa12.98□□□□□ -0.33
TCOF1-201ENST00000323668 PPP5D1E7EU14 171 aa12.98□□□□□ -0.33
TCOF1-201ENST00000323668 ADAM10O14672 748 aa12.98□□□□□ -0.33
TCOF1-201ENST00000323668 TOX3O15405 576 aaPredicted RBP12.98□□□□□ -0.33
TCOF1-201ENST00000323668 IGKV3-11P04433 115 aa12.98□□□□□ -0.33
TCOF1-201ENST00000323668 ZNF429Q86V71 674 aa12.98□□□□□ -0.33
TCOF1-201ENST00000323668 ISOC2Q96AB3 205 aa12.98□□□□□ -0.33
TCOF1-201ENST00000323668 GFI1Q99684 422 aa12.98□□□□□ -0.33
TCOF1-201ENST00000323668 CHST5Q9GZS9 411 aa12.98□□□□□ -0.33
TCOF1-201ENST00000323668 TOLLIPQ9H0E2 274 aa12.98□□□□□ -0.33
TCOF1-201ENST00000323668 CYB5BO43169 146 aa12.97□□□□□ -0.33
TCOF1-201ENST00000323668 PATE4P0C8F1 98 aa12.97□□□□□ -0.33
TCOF1-201ENST00000323668 WDR74Q6RFH5 385 aaPredicted RBP12.97□□□□□ -0.33
TCOF1-201ENST00000323668 ADPRHL1Q8NDY3 354 aa12.97□□□□□ -0.33
TCOF1-201ENST00000323668 TLNRD1Q9H1K6 362 aa12.97□□□□□ -0.33
TCOF1-201ENST00000323668 IAPPP10997 89 aa12.97□□□□□ -0.33
TCOF1-201ENST00000323668 CNEP1R1Q8N9A8 125 aa12.97□□□□□ -0.33
TCOF1-201ENST00000323668 THOC3Q96J01 351 aaKnown RBP12.97□□□□□ -0.33
TCOF1-201ENST00000323668 GNG12Q9UBI6 72 aa12.97□□□□□ -0.33
TCOF1-201ENST00000323668 TGOLN2O43493 480 aa12.97□□□□□ -0.33
TCOF1-201ENST00000323668 MUC1P15941 1255 aaPredicted RBP12.97□□□□□ -0.33
TCOF1-201ENST00000323668 OR5AS1Q8N127 324 aa12.97□□□□□ -0.33
TCOF1-201ENST00000323668 FAM206AQ9NX38 181 aa12.97□□□□□ -0.33
TCOF1-201ENST00000323668 ZNF205O95201 554 aa12.97□□□□□ -0.33
TCOF1-201ENST00000323668 LTC4SQ16873 150 aa12.97□□□□□ -0.33
TCOF1-201ENST00000323668 OR13G1Q8NGZ3 307 aa12.97□□□□□ -0.33
TCOF1-201ENST00000323668 VWCEQ96DN2 955 aa12.97□□□□□ -0.33
TCOF1-201ENST00000323668 KIF26BQ2KJY2 2108 aa12.96□□□□□ -0.33
TCOF1-201ENST00000323668 ADAM20O43506 726 aa12.96□□□□□ -0.33
TCOF1-201ENST00000323668 DAOP14920 347 aa12.96□□□□□ -0.33
TCOF1-201ENST00000323668 RCC1P18754 421 aaPredicted RBP12.96□□□□□ -0.33
TCOF1-201ENST00000323668 ARR3P36575 388 aa12.96□□□□□ -0.33
TCOF1-201ENST00000323668 P2RY1P47900 373 aa12.96□□□□□ -0.33
TCOF1-201ENST00000323668 WIPI1Q5MNZ9 446 aaPredicted RBP12.96□□□□□ -0.33
TCOF1-201ENST00000323668 SSX9Q7RTT3 188 aa12.96□□□□□ -0.33
TCOF1-201ENST00000323668 DMBX1Q8NFW5 382 aa12.96□□□□□ -0.33
TCOF1-201ENST00000323668 BTF3L4Q96K17 158 aa12.96□□□□□ -0.33
TCOF1-201ENST00000323668 RTL8AQ9BWD3 113 aa12.96□□□□□ -0.33
TCOF1-201ENST00000323668 C12orf49Q9H741 205 aa12.96□□□□□ -0.33
TCOF1-201ENST00000323668 SLC2A9Q9NRM0 540 aa12.96□□□□□ -0.33
TCOF1-201ENST00000323668 PSENENQ9NZ42 101 aa12.96□□□□□ -0.33
TCOF1-201ENST00000323668 POLDIP2Q9Y2S7 368 aa12.96□□□□□ -0.33
TCOF1-201ENST00000323668 VSTM5A8MXK1 200 aa12.96□□□□□ -0.33
TCOF1-201ENST00000323668 ARG1P05089 322 aa12.96□□□□□ -0.33
TCOF1-201ENST00000323668 FABP1P07148 127 aa12.96□□□□□ -0.33
TCOF1-201ENST00000323668 GRPP07492 148 aa12.96□□□□□ -0.33
TCOF1-201ENST00000323668 GPM6AP51674 278 aa12.96□□□□□ -0.33
TCOF1-201ENST00000323668 POLR2GP62487 172 aaKnown RBP eCLIP12.96□□□□□ -0.33
TCOF1-201ENST00000323668 FOXK1P85037 733 aa12.96□□□□□ -0.33
TCOF1-201ENST00000323668 PLPPR5Q32ZL2 321 aa12.96□□□□□ -0.33
TCOF1-201ENST00000323668 OR2M3Q8NG83 312 aa12.96□□□□□ -0.33
TCOF1-201ENST00000323668 RAB33BQ9H082 229 aa12.96□□□□□ -0.33
TCOF1-201ENST00000323668 GCM1Q9NP62 436 aa12.96□□□□□ -0.33
TCOF1-201ENST00000323668 TMEM100Q9NV29 134 aa12.96□□□□□ -0.33
TCOF1-201ENST00000323668 B3GAT1Q9P2W7 334 aa12.96□□□□□ -0.33
TCOF1-201ENST00000323668 SEC11BP0C7V7 166 aa12.96□□□□□ -0.33
TCOF1-201ENST00000323668 RD3LP0DJH9 198 aa12.96□□□□□ -0.33
TCOF1-201ENST00000323668 LYZL2Q7Z4W2 148 aa12.96□□□□□ -0.33
TCOF1-201ENST00000323668 SULT1A2P50226 295 aa12.96□□□□□ -0.34
TCOF1-201ENST00000323668 SLC16A13Q7RTY0 426 aa12.96□□□□□ -0.34
TCOF1-201ENST00000323668 APOBEC3DQ96AK3 386 aaPredicted RBP12.96□□□□□ -0.34
TCOF1-201ENST00000323668 ZNF501Q96CX3 271 aaPredicted RBP12.96□□□□□ -0.34
TCOF1-201ENST00000323668 TMPRSS5Q9H3S3 457 aa12.96□□□□□ -0.34
TCOF1-201ENST00000323668 RAB9BQ9NP90 201 aa12.96□□□□□ -0.34
TCOF1-201ENST00000323668 EDN3P14138 238 aa12.95□□□□□ -0.34
TCOF1-201ENST00000323668 DTYMKP23919 212 aa12.95□□□□□ -0.34
TCOF1-201ENST00000323668 MNX1P50219 401 aaPredicted RBP12.95□□□□□ -0.34
TCOF1-201ENST00000323668 RAC3P60763 192 aa12.95□□□□□ -0.34
TCOF1-201ENST00000323668 IL11RAQ14626 422 aa12.95□□□□□ -0.34
TCOF1-201ENST00000323668 C4orf17Q53FE4 359 aa12.95□□□□□ -0.34
TCOF1-201ENST00000323668 LDLRAD3Q86YD5 345 aa12.95□□□□□ -0.34
TCOF1-201ENST00000323668 WNT2BQ93097 391 aa12.95□□□□□ -0.34
TCOF1-201ENST00000323668 ARV1Q9H2C2 271 aa12.95□□□□□ -0.34
TCOF1-201ENST00000323668 MPTX1A8MV57 137 aa12.95□□□□□ -0.34
TCOF1-201ENST00000323668 GEMIN2O14893 280 aaKnown RBP12.95□□□□□ -0.34
TCOF1-201ENST00000323668 MZT1Q08AG7 82 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms