RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 PRDM13Q9H4Q3 707 aa11.73□□□□□ -0.53
SKA3-202ENST00000314759 CXorf65A6NEN9 183 aa11.73□□□□□ -0.53
SKA3-202ENST00000314759 PRH1P02810 166 aa11.73□□□□□ -0.53
SKA3-202ENST00000314759 LMO1P25800 156 aa11.73□□□□□ -0.53
SKA3-202ENST00000314759 CD27P26842 260 aa11.73□□□□□ -0.53
SKA3-202ENST00000314759 MSX1P28360 303 aa11.73□□□□□ -0.53
SKA3-202ENST00000314759 P2RY1P47900 373 aa11.73□□□□□ -0.53
SKA3-202ENST00000314759 TMEM187Q14656 261 aa11.73□□□□□ -0.53
SKA3-202ENST00000314759 PDZD11Q5EBL8 140 aa11.73□□□□□ -0.53
SKA3-202ENST00000314759 TSPO2Q5TGU0 170 aa11.73□□□□□ -0.53
SKA3-202ENST00000314759 CDCP2Q5VXM1 449 aa11.73□□□□□ -0.53
SKA3-202ENST00000314759 RTL6Q6ICC9 239 aa11.73□□□□□ -0.53
SKA3-202ENST00000314759 SPNS3Q6ZMD2 512 aa11.73□□□□□ -0.53
SKA3-202ENST00000314759 C1QL4Q86Z23 238 aa11.73□□□□□ -0.53
SKA3-202ENST00000314759 Q96M66 194 aa11.73□□□□□ -0.53
SKA3-202ENST00000314759 ZDHHC8Q9ULC8 765 aa11.73□□□□□ -0.53
SKA3-202ENST00000314759 RCL1Q9Y2P8 373 aaKnown RBP11.73□□□□□ -0.53
SKA3-202ENST00000314759 BORCS7-ASMTA0A0B4J1R7 106 aa11.72□□□□□ -0.53
SKA3-202ENST00000314759 A0A0U1RQV5 110 aa11.72□□□□□ -0.53
SKA3-202ENST00000314759 OR5H15A6NDH6 313 aa11.72□□□□□ -0.53
SKA3-202ENST00000314759 GLI4P10075 376 aa11.72□□□□□ -0.53
SKA3-202ENST00000314759 OPRM1P35372 400 aa11.72□□□□□ -0.53
SKA3-202ENST00000314759 TMEM176BQ3YBM2 270 aaPredicted RBP11.72□□□□□ -0.53
SKA3-202ENST00000314759 FAM69BQ5VUD6 431 aa11.72□□□□□ -0.53
SKA3-202ENST00000314759 OR10D4PQ8NGN7 298 aa11.72□□□□□ -0.53
SKA3-202ENST00000314759 HPSE2Q8WWQ2 592 aa11.72□□□□□ -0.53
SKA3-202ENST00000314759 PP6455Q8WZ26 134 aa11.72□□□□□ -0.53
SKA3-202ENST00000314759 TGIF2Q9GZN2 237 aa11.72□□□□□ -0.53
SKA3-202ENST00000314759 METTL7AQ9H8H3 244 aa11.72□□□□□ -0.53
SKA3-202ENST00000314759 KCNIP3Q9Y2W7 256 aa11.72□□□□□ -0.53
SKA3-202ENST00000314759 MAS1LP35410 378 aa11.72□□□□□ -0.53
SKA3-202ENST00000314759 ASCL1P50553 236 aa11.72□□□□□ -0.53
SKA3-202ENST00000314759 SUCLG1P53597 346 aaKnown RBP11.72□□□□□ -0.53
SKA3-202ENST00000314759 CLDN17P56750 224 aa11.72□□□□□ -0.53
SKA3-202ENST00000314759 HNRNPKP61978 463 aaKnown RBP eCLIP11.72□□□□□ -0.53
SKA3-202ENST00000314759 SLC35A1P78382 337 aa11.72□□□□□ -0.53
SKA3-202ENST00000314759 NHLH2Q02577 135 aa11.72□□□□□ -0.53
SKA3-202ENST00000314759 HSD17B11Q8NBQ5 300 aa11.72□□□□□ -0.53
SKA3-202ENST00000314759 RTN4IP1Q8WWV3 396 aaPredicted RBP11.72□□□□□ -0.53
SKA3-202ENST00000314759 REEP6Q96HR9 211 aa11.72□□□□□ -0.53
SKA3-202ENST00000314759 MEGF10Q96KG7 1140 aa11.72□□□□□ -0.53
SKA3-202ENST00000314759 NAA60Q9H7X0 242 aa11.72□□□□□ -0.53
SKA3-202ENST00000314759 GAR1Q9NY12 217 aaKnown RBP11.72□□□□□ -0.53
SKA3-202ENST00000314759 CABIN1Q9Y6J0 2220 aa11.71□□□□□ -0.53
SKA3-202ENST00000314759 DUX1O43812 170 aa11.71□□□□□ -0.53
SKA3-202ENST00000314759 GPR137BO60478 399 aa11.71□□□□□ -0.53
SKA3-202ENST00000314759 HEXBP07686 556 aa11.71□□□□□ -0.53
SKA3-202ENST00000314759 CXCL1P09341 107 aa11.71□□□□□ -0.53
SKA3-202ENST00000314759 S100A2P29034 98 aa11.71□□□□□ -0.53
SKA3-202ENST00000314759 SSTP61278 116 aa11.71□□□□□ -0.53
SKA3-202ENST00000314759 LSM6P62312 80 aaKnown RBP11.71□□□□□ -0.53
SKA3-202ENST00000314759 CCL20P78556 96 aa11.71□□□□□ -0.53
SKA3-202ENST00000314759 CARFQ8N187 725 aa11.71□□□□□ -0.53
SKA3-202ENST00000314759 OR52M1Q8NGK5 317 aa11.71□□□□□ -0.53
SKA3-202ENST00000314759 GTF3AQ92664 365 aaKnown RBP11.71□□□□□ -0.53
SKA3-202ENST00000314759 MUCL1Q96DR8 90 aa11.71□□□□□ -0.53
SKA3-202ENST00000314759 AK3Q9UIJ7 227 aa11.71□□□□□ -0.53
SKA3-202ENST00000314759 URGCP-MRPS24S4R325 110 aa11.71□□□□□ -0.53
SKA3-202ENST00000314759 SPAG17Q6Q759 2223 aa11.71□□□□□ -0.53
SKA3-202ENST00000314759 IGLV3-32A0A0A0MS00 114 aa11.71□□□□□ -0.54
SKA3-202ENST00000314759 AQP7P3A6NL99 342 aa11.71□□□□□ -0.54
SKA3-202ENST00000314759 ZNF850A8MQ14 1090 aa11.71□□□□□ -0.54
SKA3-202ENST00000314759 DBHP09172 617 aa11.71□□□□□ -0.54
SKA3-202ENST00000314759 ZNF728P0DKX0 622 aa11.71□□□□□ -0.54
SKA3-202ENST00000314759 ZNF133P52736 654 aaPredicted RBP11.71□□□□□ -0.54
SKA3-202ENST00000314759 ENDOGQ14249 297 aaKnown RBP11.71□□□□□ -0.54
SKA3-202ENST00000314759 TAF9Q16594 264 aa11.71□□□□□ -0.54
SKA3-202ENST00000314759 PHYHD1Q5SRE7 291 aa11.71□□□□□ -0.54
SKA3-202ENST00000314759 GPR157Q5UAW9 335 aa11.71□□□□□ -0.54
SKA3-202ENST00000314759 PLXDC2Q6UX71 529 aa11.71□□□□□ -0.54
SKA3-202ENST00000314759 LRRC18Q8N456 261 aa11.71□□□□□ -0.54
SKA3-202ENST00000314759 OR2M3Q8NG83 312 aa11.71□□□□□ -0.54
SKA3-202ENST00000314759 GALNT14Q96FL9 552 aa11.71□□□□□ -0.54
SKA3-202ENST00000314759 SEMA5BQ9P283 1151 aa11.71□□□□□ -0.54
SKA3-202ENST00000314759 NXT1Q9UKK6 140 aaKnown RBP11.71□□□□□ -0.54
SKA3-202ENST00000314759 WDFY3Q8IZQ1 3526 aa11.71□□□□□ -0.54
SKA3-202ENST00000314759 SHANK1Q9Y566 2161 aa11.71□□□□□ -0.54
SKA3-202ENST00000314759 ANGPTL7O43827 346 aa11.7□□□□□ -0.54
SKA3-202ENST00000314759 OR2J2O76002 312 aa11.7□□□□□ -0.54
SKA3-202ENST00000314759 MSR1P21757 451 aa11.7□□□□□ -0.54
SKA3-202ENST00000314759 GJC3Q8NFK1 279 aa11.7□□□□□ -0.54
SKA3-202ENST00000314759 NTNG2Q96CW9 530 aa11.7□□□□□ -0.54
SKA3-202ENST00000314759 OPA3Q9H6K4 179 aa11.7□□□□□ -0.54
SKA3-202ENST00000314759 B3GALT1Q9Y5Z6 326 aa11.7□□□□□ -0.54
SKA3-202ENST00000314759 ASCC3Q8N3C0 2202 aaKnown RBP11.7□□□□□ -0.54
SKA3-202ENST00000314759 ST8SIA5O15466 376 aa11.7□□□□□ -0.54
SKA3-202ENST00000314759 CEBPGP53567 150 aa11.7□□□□□ -0.54
SKA3-202ENST00000314759 MTCP1P56278 107 aa11.7□□□□□ -0.54
SKA3-202ENST00000314759 FXYD4P59646 89 aa11.7□□□□□ -0.54
SKA3-202ENST00000314759 ABCA11PQ4W5N1 156 aa11.7□□□□□ -0.54
SKA3-202ENST00000314759 PHLDA2Q53GA4 152 aa11.7□□□□□ -0.54
SKA3-202ENST00000314759 SOHLH1Q5JUK2 328 aa11.7□□□□□ -0.54
SKA3-202ENST00000314759 CCDC54Q8NEL0 328 aa11.7□□□□□ -0.54
SKA3-202ENST00000314759 TSTD1Q8NFU3 115 aa11.7□□□□□ -0.54
SKA3-202ENST00000314759 C18orf12Q96KH6 178 aa11.7□□□□□ -0.54
SKA3-202ENST00000314759 GPR61Q9BZJ8 451 aa11.7□□□□□ -0.54
SKA3-202ENST00000314759 GPR173Q9NS66 373 aa11.7□□□□□ -0.54
SKA3-202ENST00000314759 UFSP2Q9NUQ7 469 aa11.7□□□□□ -0.54
SKA3-202ENST00000314759 NECAP2Q9NVZ3 263 aa11.7□□□□□ -0.54
SKA3-202ENST00000314759 PARPBPQ9NWS1 579 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms