RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 PEX14O75381 377 aa14.07□□□□□ -0.16
USP4-201ENST00000265560 TFF1P04155 84 aa14.07□□□□□ -0.16
USP4-201ENST00000265560 CDH24Q86UP0 819 aa14.07□□□□□ -0.16
USP4-201ENST00000265560 WFDC8Q8IUA0 241 aa14.07□□□□□ -0.16
USP4-201ENST00000265560 TMEM229BQ8NBD8 167 aa14.07□□□□□ -0.16
USP4-201ENST00000265560 OR5A2Q8NGI9 324 aa14.07□□□□□ -0.16
USP4-201ENST00000265560 TM2D1Q9BX74 207 aa14.07□□□□□ -0.16
USP4-201ENST00000265560 OSGIN2Q9Y236 505 aa14.07□□□□□ -0.16
USP4-201ENST00000265560 SULT1C2O00338 296 aa14.07□□□□□ -0.16
USP4-201ENST00000265560 NDUFB6O95139 128 aa14.07□□□□□ -0.16
USP4-201ENST00000265560 GSTP1P09211 210 aaKnown RBP14.07□□□□□ -0.16
USP4-201ENST00000265560 ZNF735P0CB33 412 aa14.07□□□□□ -0.16
USP4-201ENST00000265560 VSIG10L2P0DP72 767 aa14.07□□□□□ -0.16
USP4-201ENST00000265560 PRKACAP17612 351 aa14.07□□□□□ -0.16
USP4-201ENST00000265560 SYT3Q9BQG1 590 aa14.07□□□□□ -0.16
USP4-201ENST00000265560 GHITMQ9H3K2 345 aa14.07□□□□□ -0.16
USP4-201ENST00000265560 PLEKHA6Q9Y2H5 1048 aa14.07□□□□□ -0.16
USP4-201ENST00000265560 ZNF835Q9Y2P0 537 aa14.07□□□□□ -0.16
USP4-201ENST00000265560 MYO18BQ8IUG5 2567 aa14.07□□□□□ -0.16
USP4-201ENST00000265560 NAP1L6A6NFF2 107 aa14.06□□□□□ -0.16
USP4-201ENST00000265560 MLNRO43193 412 aa14.06□□□□□ -0.16
USP4-201ENST00000265560 SSNA1O43805 119 aa14.06□□□□□ -0.16
USP4-201ENST00000265560 MPPED2Q15777 294 aa14.06□□□□□ -0.16
USP4-201ENST00000265560 TIMM23BQ5SRD1 257 aa14.06□□□□□ -0.16
USP4-201ENST00000265560 ZBTB37Q5TC79 503 aa14.06□□□□□ -0.16
USP4-201ENST00000265560 ST8SIA4Q92187 359 aa14.06□□□□□ -0.16
USP4-201ENST00000265560 CPNE2Q96FN4 548 aaPredicted RBP14.06□□□□□ -0.16
USP4-201ENST00000265560 OR51J1Q9H342 316 aa14.06□□□□□ -0.16
USP4-201ENST00000265560 TRAPPC2LH3BP13 241 aa14.06□□□□□ -0.16
USP4-201ENST00000265560 HS3ST1O14792 307 aa14.06□□□□□ -0.16
USP4-201ENST00000265560 PI3P19957 117 aa14.06□□□□□ -0.16
USP4-201ENST00000265560 AMY2BP19961 511 aa14.06□□□□□ -0.16
USP4-201ENST00000265560 RBM11P57052 281 aaKnown RBP14.06□□□□□ -0.16
USP4-201ENST00000265560 RRAS2P62070 204 aaPredicted RBP14.06□□□□□ -0.16
USP4-201ENST00000265560 GNG3P63215 75 aa14.06□□□□□ -0.16
USP4-201ENST00000265560 KLRB1Q12918 225 aa14.06□□□□□ -0.16
USP4-201ENST00000265560 ASCL4Q6XD76 172 aa14.06□□□□□ -0.16
USP4-201ENST00000265560 Q6ZR03 302 aa14.06□□□□□ -0.16
USP4-201ENST00000265560 MED28Q9H204 178 aa14.06□□□□□ -0.16
USP4-201ENST00000265560 ZNF442Q9H7R0 627 aa14.06□□□□□ -0.16
USP4-201ENST00000265560 COPZ2Q9P299 210 aa14.06□□□□□ -0.16
USP4-201ENST00000265560 TPPPO94811 219 aa14.06□□□□□ -0.16
USP4-201ENST00000265560 HOXB1P14653 301 aaPredicted RBP14.06□□□□□ -0.16
USP4-201ENST00000265560 RAC2P15153 192 aa14.06□□□□□ -0.16
USP4-201ENST00000265560 BTG1P62324 171 aa14.06□□□□□ -0.16
USP4-201ENST00000265560 ZNF154Q13106 437 aa14.06□□□□□ -0.16
USP4-201ENST00000265560 BAMBIQ13145 260 aa14.06□□□□□ -0.16
USP4-201ENST00000265560 OR8G1Q15617 311 aa14.06□□□□□ -0.16
USP4-201ENST00000265560 PRAMEF6Q5VXH4 476 aa14.06□□□□□ -0.16
USP4-201ENST00000265560 SCCPDHQ8NBX0 429 aa14.06□□□□□ -0.16
USP4-201ENST00000265560 PXT1Q8NFP0 134 aa14.06□□□□□ -0.16
USP4-201ENST00000265560 OR11H7Q8NGC8 314 aa14.06□□□□□ -0.16
USP4-201ENST00000265560 TMPRSS13Q9BYE2 586 aa14.06□□□□□ -0.16
USP4-201ENST00000265560 ZNF69Q9UC07 566 aa14.06□□□□□ -0.16
USP4-201ENST00000265560 PURGQ9UJV8 347 aaKnown RBP14.06□□□□□ -0.16
USP4-201ENST00000265560 ZNF222Q9UK12 451 aa14.06□□□□□ -0.16
USP4-201ENST00000265560 ZNF221Q9UK13 617 aa14.06□□□□□ -0.16
USP4-201ENST00000265560 RALYQ9UKM9 306 aaKnown RBP14.06□□□□□ -0.16
USP4-201ENST00000265560 TACC2O95359 2948 aa14.06□□□□□ -0.16
USP4-201ENST00000265560 OR2AT4A6NND4 320 aa14.05□□□□□ -0.16
USP4-201ENST00000265560 RBMS2Q15434 407 aaKnown RBP14.05□□□□□ -0.16
USP4-201ENST00000265560 OR13C8Q8NGS7 320 aa14.05□□□□□ -0.16
USP4-201ENST00000265560 BOLA1Q9Y3E2 137 aa14.05□□□□□ -0.16
USP4-201ENST00000265560 MPC1Q9Y5U8 109 aa14.05□□□□□ -0.16
USP4-201ENST00000265560 SCGNO76038 276 aa14.05□□□□□ -0.16
USP4-201ENST00000265560 CRYAAP02489 173 aa14.05□□□□□ -0.16
USP4-201ENST00000265560 CHATP28329 748 aa14.05□□□□□ -0.16
USP4-201ENST00000265560 GCH1P30793 250 aa14.05□□□□□ -0.16
USP4-201ENST00000265560 IKZF1Q13422 519 aa14.05□□□□□ -0.16
USP4-201ENST00000265560 RDH5Q92781 318 aa14.05□□□□□ -0.16
USP4-201ENST00000265560 EMG1Q92979 244 aaKnown RBP14.05□□□□□ -0.16
USP4-201ENST00000265560 MRGPRFQ96AM1 343 aa14.05□□□□□ -0.16
USP4-201ENST00000265560 WDR89Q96FK6 387 aaPredicted RBP14.05□□□□□ -0.16
USP4-201ENST00000265560 OPA3Q9H6K4 179 aa14.05□□□□□ -0.16
USP4-201ENST00000265560 AMDHD2Q9Y303 409 aa14.05□□□□□ -0.16
USP4-201ENST00000265560 ASH1LQ9NR48 2969 aaKnown RBP14.05□□□□□ -0.16
USP4-201ENST00000265560 ZNF780AO75290 641 aaPredicted RBP14.04□□□□□ -0.16
USP4-201ENST00000265560 IFNA6P05013 189 aa14.04□□□□□ -0.16
USP4-201ENST00000265560 TSPAN5P62079 268 aa14.04□□□□□ -0.16
USP4-201ENST00000265560 RBPJQ06330 500 aa14.04□□□□□ -0.16
USP4-201ENST00000265560 SPRNQ5BIV9 151 aa14.04□□□□□ -0.16
USP4-201ENST00000265560 NEK7Q8TDX7 302 aa14.04□□□□□ -0.16
USP4-201ENST00000265560 RND1Q92730 232 aa14.04□□□□□ -0.16
USP4-201ENST00000265560 TECTBQ96PL2 329 aa14.04□□□□□ -0.16
USP4-201ENST00000265560 CMSS1Q9BQ75 279 aaKnown RBP14.04□□□□□ -0.16
USP4-201ENST00000265560 WDR13Q9H1Z4 485 aa14.04□□□□□ -0.16
USP4-201ENST00000265560 OR51I2Q9H344 312 aa14.04□□□□□ -0.16
USP4-201ENST00000265560 MEX3AA1L020 520 aaKnown RBP14.04□□□□□ -0.16
USP4-201ENST00000265560 A6NLC8 198 aa14.04□□□□□ -0.16
USP4-201ENST00000265560 HOXD4P09016 255 aaPredicted RBP14.04□□□□□ -0.16
USP4-201ENST00000265560 EIF2S3LQ2VIR3 472 aaKnown RBP14.04□□□□□ -0.16
USP4-201ENST00000265560 MKXQ8IYA7 352 aa14.04□□□□□ -0.16
USP4-201ENST00000265560 CHIAQ9BZP6 476 aa14.04□□□□□ -0.16
USP4-201ENST00000265560 TMEM100Q9NV29 134 aa14.04□□□□□ -0.16
USP4-201ENST00000265560 C16orf97H3BN30 126 aa14.04□□□□□ -0.16
USP4-201ENST00000265560 WNT9BO14905 357 aa14.04□□□□□ -0.16
USP4-201ENST00000265560 CEBPDP49716 269 aaPredicted RBP14.04□□□□□ -0.16
USP4-201ENST00000265560 NPY4RP50391 375 aa14.04□□□□□ -0.16
USP4-201ENST00000265560 CDSNQ15517 529 aa14.04□□□□□ -0.16
USP4-201ENST00000265560 ZNF718Q3SXZ3 478 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms