RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 PDZD11Q5EBL8 140 aa17■□□□□ 0.31
UPF1-201ENST00000262803 UBE3DQ7Z6J8 389 aa17■□□□□ 0.31
UPF1-201ENST00000262803 LYG1Q8N1E2 194 aa17■□□□□ 0.31
UPF1-201ENST00000262803 CFHR5Q9BXR6 569 aa17■□□□□ 0.31
UPF1-201ENST00000262803 TCFL5Q9UL49 500 aa17■□□□□ 0.31
UPF1-201ENST00000262803 A0A1B0GTH9 108 aa16.99■□□□□ 0.31
UPF1-201ENST00000262803 FABP9Q0Z7S8 132 aa16.99■□□□□ 0.31
UPF1-201ENST00000262803 ZNF425Q6IV72 752 aa16.99■□□□□ 0.31
UPF1-201ENST00000262803 C20orf196Q8IYI0 205 aa16.99■□□□□ 0.31
UPF1-201ENST00000262803 OPRK1P41145 380 aa16.99■□□□□ 0.31
UPF1-201ENST00000262803 RHOBP62745 196 aa16.99■□□□□ 0.31
UPF1-201ENST00000262803 RXFP4Q8TDU9 374 aa16.99■□□□□ 0.31
UPF1-201ENST00000262803 GNRHR2Q96P88 292 aa16.99■□□□□ 0.31
UPF1-201ENST00000262803 TSPAN32Q96QS1 320 aa16.99■□□□□ 0.31
UPF1-201ENST00000262803 NEU3Q9UQ49 428 aa16.99■□□□□ 0.31
UPF1-201ENST00000262803 SFT2D2O95562 160 aa16.99■□□□□ 0.31
UPF1-201ENST00000262803 PAX5Q02548 391 aa16.99■□□□□ 0.31
UPF1-201ENST00000262803 CA11O75493 328 aa16.99■□□□□ 0.31
UPF1-201ENST00000262803 CT62P0C5K7 136 aa16.99■□□□□ 0.31
UPF1-201ENST00000262803 CA6P23280 308 aa16.99■□□□□ 0.31
UPF1-201ENST00000262803 AMTP48728 403 aa16.99■□□□□ 0.31
UPF1-201ENST00000262803 MARVELD1Q9BSK0 173 aa16.99■□□□□ 0.31
UPF1-201ENST00000262803 IL36GQ9NZH8 169 aa16.99■□□□□ 0.31
UPF1-201ENST00000262803 TMEM272A0A1B0GTI8 110 aa16.98■□□□□ 0.31
UPF1-201ENST00000262803 LPAR6P43657 344 aa16.98■□□□□ 0.31
UPF1-201ENST00000262803 LGALS7P47929 136 aa16.98■□□□□ 0.31
UPF1-201ENST00000262803 OR2M7Q8NG81 312 aa16.98■□□□□ 0.31
UPF1-201ENST00000262803 RASL12Q9NYN1 266 aa16.98■□□□□ 0.31
UPF1-201ENST00000262803 CLCF1Q9UBD9 225 aa16.98■□□□□ 0.31
UPF1-201ENST00000262803 UBE2L5PA0A1B0GUS4 154 aa16.98■□□□□ 0.31
UPF1-201ENST00000262803 TMEM210A6NLX4 147 aa16.98■□□□□ 0.31
UPF1-201ENST00000262803 TPPP2P59282 170 aa16.98■□□□□ 0.31
UPF1-201ENST00000262803 ALKBH6Q3KRA9 238 aa16.98■□□□□ 0.31
UPF1-201ENST00000262803 SLC25A40Q8TBP6 338 aa16.98■□□□□ 0.31
UPF1-201ENST00000262803 CMBLQ96DG6 245 aa16.98■□□□□ 0.31
UPF1-201ENST00000262803 PECRQ9BY49 303 aa16.98■□□□□ 0.31
UPF1-201ENST00000262803 ZNF275Q9NSD4 429 aaPredicted RBP16.98■□□□□ 0.31
UPF1-201ENST00000262803 TRIP11Q15643 1979 aa16.98■□□□□ 0.31
UPF1-201ENST00000262803 DNASE2O00115 360 aaPredicted RBP16.98■□□□□ 0.31
UPF1-201ENST00000262803 TMEM92Q6UXU6 159 aa16.98■□□□□ 0.31
UPF1-201ENST00000262803 PNPLA5Q7Z6Z6 429 aaPredicted RBP16.98■□□□□ 0.31
UPF1-201ENST00000262803 OR5R1Q8NH85 324 aa16.98■□□□□ 0.31
UPF1-201ENST00000262803 MASP2O00187 686 aa16.98■□□□□ 0.31
UPF1-201ENST00000262803 TSPAN7P41732 249 aa16.98■□□□□ 0.31
UPF1-201ENST00000262803 COL19A1Q14993 1142 aa16.98■□□□□ 0.31
UPF1-201ENST00000262803 ZNF774Q6NX45 483 aa16.98■□□□□ 0.31
UPF1-201ENST00000262803 FAHD2BQ6P2I3 314 aaPredicted RBP16.98■□□□□ 0.31
UPF1-201ENST00000262803 SFTPA2Q8IWL1 248 aa16.98■□□□□ 0.31
UPF1-201ENST00000262803 SFTPA1Q8IWL2 248 aa16.98■□□□□ 0.31
UPF1-201ENST00000262803 OR52L2PQ8NGH6 319 aa16.98■□□□□ 0.31
UPF1-201ENST00000262803 FAHD2AQ96GK7 314 aa16.98■□□□□ 0.31
UPF1-201ENST00000262803 ABHD1Q96SE0 405 aa16.98■□□□□ 0.31
UPF1-201ENST00000262803 MS4A5Q9H3V2 200 aa16.98■□□□□ 0.31
UPF1-201ENST00000262803 FAM3AP98173 230 aa16.97■□□□□ 0.31
UPF1-201ENST00000262803 ZDHHC11Q9H8X9 412 aa16.97■□□□□ 0.31
UPF1-201ENST00000262803 CTAG2O75638 210 aa16.97■□□□□ 0.31
UPF1-201ENST00000262803 SLC38A11Q08AI6 406 aa16.97■□□□□ 0.31
UPF1-201ENST00000262803 COX19Q49B96 90 aa16.97■□□□□ 0.31
UPF1-201ENST00000262803 SLC25A30Q5SVS4 291 aa16.97■□□□□ 0.31
UPF1-201ENST00000262803 CBLN3Q6UW01 205 aa16.97■□□□□ 0.31
UPF1-201ENST00000262803 NRTNQ99748 197 aa16.97■□□□□ 0.31
UPF1-201ENST00000262803 CES1P1Q9UKY3 287 aa16.97■□□□□ 0.31
UPF1-201ENST00000262803 FFAR1O14842 300 aa16.97■□□□□ 0.31
UPF1-201ENST00000262803 RER1O15258 196 aa16.97■□□□□ 0.31
UPF1-201ENST00000262803 MUC20Q8N307 709 aaPredicted RBP16.97■□□□□ 0.31
UPF1-201ENST00000262803 R4GN57 208 aa16.97■□□□□ 0.31
UPF1-201ENST00000262803 ABCA3Q99758 1704 aa16.97■□□□□ 0.31
UPF1-201ENST00000262803 OOEPA6NGQ2 149 aa16.97■□□□□ 0.31
UPF1-201ENST00000262803 FCGR3BO75015 233 aa16.97■□□□□ 0.31
UPF1-201ENST00000262803 SUMO1P63165 101 aaKnown RBP16.97■□□□□ 0.31
UPF1-201ENST00000262803 ISXQ2M1V0 245 aa16.97■□□□□ 0.31
UPF1-201ENST00000262803 SPICQ8N5J4 248 aa16.97■□□□□ 0.31
UPF1-201ENST00000262803 ASB10Q8WXI3 467 aa16.97■□□□□ 0.31
UPF1-201ENST00000262803 NAA60Q9H7X0 242 aa16.97■□□□□ 0.31
UPF1-201ENST00000262803 ZNF716A6NP11 495 aa16.96■□□□□ 0.31
UPF1-201ENST00000262803 B4E171 279 aa16.96■□□□□ 0.31
UPF1-201ENST00000262803 CD300CQ08708 224 aa16.96■□□□□ 0.31
UPF1-201ENST00000262803 DHRS2Q13268 280 aa16.96■□□□□ 0.31
UPF1-201ENST00000262803 C10orf111Q8N326 155 aa16.96■□□□□ 0.31
UPF1-201ENST00000262803 TGIF2Q9GZN2 237 aa16.96■□□□□ 0.31
UPF1-201ENST00000262803 CD96P40200 585 aa16.96■□□□□ 0.31
UPF1-201ENST00000262803 ZNF561Q8N587 486 aa16.96■□□□□ 0.31
UPF1-201ENST00000262803 ZBTB34Q8NCN2 500 aa16.96■□□□□ 0.31
UPF1-201ENST00000262803 ARHGAP5-AS1Q96IT6 56 aa16.96■□□□□ 0.31
UPF1-201ENST00000262803 RHOFQ9HBH0 211 aa16.96■□□□□ 0.31
UPF1-201ENST00000262803 C3orf85A0A1B0GTC6 90 aa16.96■□□□□ 0.31
UPF1-201ENST00000262803 H3BP45 60 aa16.96■□□□□ 0.31
UPF1-201ENST00000262803 COL9A1P20849 921 aa16.96■□□□□ 0.31
UPF1-201ENST00000262803 INO80CQ6PI98 192 aaPredicted RBP16.96■□□□□ 0.31
UPF1-201ENST00000262803 NECAP1Q8NC96 275 aa16.96■□□□□ 0.31
UPF1-201ENST00000262803 MISP3Q96FF7 219 aa16.96■□□□□ 0.31
UPF1-201ENST00000262803 ZNF107Q9UII5 783 aaPredicted RBP16.96■□□□□ 0.31
UPF1-201ENST00000262803 CDC14BO60729 498 aa16.96■□□□□ 0.31
UPF1-201ENST00000262803 NTF3P20783 257 aa16.96■□□□□ 0.31
UPF1-201ENST00000262803 CALCRP30988 508 aa16.96■□□□□ 0.31
UPF1-201ENST00000262803 MOGAT1Q96PD6 335 aa16.96■□□□□ 0.31
UPF1-201ENST00000262803 CDX2Q99626 313 aaPredicted RBP16.96■□□□□ 0.31
UPF1-201ENST00000262803 OR1A1Q9P1Q5 309 aa16.96■□□□□ 0.31
UPF1-201ENST00000262803 PSG11Q9UQ72 335 aa16.96■□□□□ 0.31
UPF1-201ENST00000262803 SP1P08047 785 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms