RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 PUS1Q9Y606 427 aaKnown RBP eCLIP10.8□□□□□ -0.68
NUP88-201ENST00000225696 HMGN3Q15651 99 aa10.79□□□□□ -0.68
NUP88-201ENST00000225696 SLC25A53Q5H9E4 307 aa10.79□□□□□ -0.68
NUP88-201ENST00000225696 BATF2Q8N1L9 274 aa10.79□□□□□ -0.68
NUP88-201ENST00000225696 FAM213BQ8TBF2 198 aa10.79□□□□□ -0.68
NUP88-201ENST00000225696 YPEL4Q96NS1 127 aa10.79□□□□□ -0.68
NUP88-201ENST00000225696 NAA60Q9H7X0 242 aa10.79□□□□□ -0.68
NUP88-201ENST00000225696 LUZP4Q9P127 313 aa10.79□□□□□ -0.68
NUP88-201ENST00000225696 MMP24Q9Y5R2 645 aa10.79□□□□□ -0.68
NUP88-201ENST00000225696 FAM230AA0A1W2PPH8 454 aa10.79□□□□□ -0.68
NUP88-201ENST00000225696 CDRT15L2A8MXV6 281 aa10.79□□□□□ -0.68
NUP88-201ENST00000225696 C2CD4DB7Z1M9 353 aa10.79□□□□□ -0.68
NUP88-201ENST00000225696 NDUFS6O75380 124 aaKnown RBP10.79□□□□□ -0.68
NUP88-201ENST00000225696 HEXBP07686 556 aa10.79□□□□□ -0.68
NUP88-201ENST00000225696 FBP1P09467 338 aa10.79□□□□□ -0.68
NUP88-201ENST00000225696 ZNF728P0DKX0 622 aa10.79□□□□□ -0.68
NUP88-201ENST00000225696 PMELP40967 661 aa10.79□□□□□ -0.68
NUP88-201ENST00000225696 MTCP1P56278 107 aa10.79□□□□□ -0.68
NUP88-201ENST00000225696 HAGHQ16775 308 aa10.79□□□□□ -0.68
NUP88-201ENST00000225696 PIGYQ3MUY2 71 aa10.79□□□□□ -0.68
NUP88-201ENST00000225696 ZNF565Q8N9K5 539 aa10.79□□□□□ -0.68
NUP88-201ENST00000225696 OR2M3Q8NG83 312 aa10.79□□□□□ -0.68
NUP88-201ENST00000225696 NABP1Q96AH0 204 aa10.79□□□□□ -0.68
NUP88-201ENST00000225696 SGK3Q96BR1 496 aa10.79□□□□□ -0.68
NUP88-201ENST00000225696 MSI2Q96DH6 328 aaKnown RBP10.79□□□□□ -0.68
NUP88-201ENST00000225696 C18orf12Q96KH6 178 aa10.79□□□□□ -0.68
NUP88-201ENST00000225696 GPHA2Q96T91 129 aa10.79□□□□□ -0.68
NUP88-201ENST00000225696 SLC35B3Q9H1N7 401 aa10.79□□□□□ -0.68
NUP88-201ENST00000225696 SLC2A9Q9NRM0 540 aa10.79□□□□□ -0.68
NUP88-201ENST00000225696 HDGFL3Q9Y3E1 203 aa10.79□□□□□ -0.68
NUP88-201ENST00000225696 AQP7P3A6NL99 342 aa10.78□□□□□ -0.68
NUP88-201ENST00000225696 AP4M1O00189 453 aa10.78□□□□□ -0.68
NUP88-201ENST00000225696 GEMIN2O14893 280 aaKnown RBP10.78□□□□□ -0.68
NUP88-201ENST00000225696 GPR137BO60478 399 aa10.78□□□□□ -0.68
NUP88-201ENST00000225696 CD63P08962 238 aa10.78□□□□□ -0.68
NUP88-201ENST00000225696 CTSSP25774 331 aa10.78□□□□□ -0.68
NUP88-201ENST00000225696 ITGA3P26006 1051 aa10.78□□□□□ -0.68
NUP88-201ENST00000225696 CD27P26842 260 aa10.78□□□□□ -0.68
NUP88-201ENST00000225696 EIF2S3P41091 472 aaKnown RBP10.78□□□□□ -0.68
NUP88-201ENST00000225696 CLINT1Q14677 625 aa10.78□□□□□ -0.68
NUP88-201ENST00000225696 FAM189A2Q15884 450 aa10.78□□□□□ -0.68
NUP88-201ENST00000225696 ZNF343Q6P1L6 599 aa10.78□□□□□ -0.68
NUP88-201ENST00000225696 PLXDC1Q8IUK5 500 aa10.78□□□□□ -0.68
NUP88-201ENST00000225696 UCN2Q96RP3 112 aa10.78□□□□□ -0.68
NUP88-201ENST00000225696 AKIRIN1Q9H9L7 192 aaPredicted RBP10.78□□□□□ -0.68
NUP88-201ENST00000225696 LMAN1LQ9HAT1 526 aa10.78□□□□□ -0.68
NUP88-201ENST00000225696 KCNJ16Q9NPI9 418 aa10.78□□□□□ -0.68
NUP88-201ENST00000225696 TMEM265A0A087WTH1 108 aa10.77□□□□□ -0.68
NUP88-201ENST00000225696 IGKV1-12A0A0C4DH73 117 aa10.77□□□□□ -0.68
NUP88-201ENST00000225696 A0A0U1RQV5 110 aa10.77□□□□□ -0.68
NUP88-201ENST00000225696 H7C1Q1 480 aa10.77□□□□□ -0.68
NUP88-201ENST00000225696 IGKV1D-12P01611 117 aa10.77□□□□□ -0.68
NUP88-201ENST00000225696 OMGP23515 440 aa10.77□□□□□ -0.68
NUP88-201ENST00000225696 ABCA11PQ4W5N1 156 aa10.77□□□□□ -0.68
NUP88-201ENST00000225696 CPEB2Q7Z5Q1 589 aaKnown RBP10.77□□□□□ -0.68
NUP88-201ENST00000225696 SLC25A45Q8N413 288 aa10.77□□□□□ -0.68
NUP88-201ENST00000225696 SUMF1Q8NBK3 374 aa10.77□□□□□ -0.68
NUP88-201ENST00000225696 OR1J1Q8NGS3 322 aa10.77□□□□□ -0.68
NUP88-201ENST00000225696 MR1Q95460 341 aa10.77□□□□□ -0.68
NUP88-201ENST00000225696 SLAMF9Q96A28 289 aa10.77□□□□□ -0.68
NUP88-201ENST00000225696 TP53RKQ96S44 253 aa10.77□□□□□ -0.68
NUP88-201ENST00000225696 GGACTQ9BVM4 153 aa10.77□□□□□ -0.68
NUP88-201ENST00000225696 RBM24Q9BX46 236 aaKnown RBP10.77□□□□□ -0.68
NUP88-201ENST00000225696 MYOTQ9UBF9 498 aa10.77□□□□□ -0.68
NUP88-201ENST00000225696 HSF4Q9ULV5 492 aa10.77□□□□□ -0.68
NUP88-201ENST00000225696 NSG1A0A0A6YYJ2 146 aa10.77□□□□□ -0.69
NUP88-201ENST00000225696 BORCS7-ASMTA0A0B4J1R7 106 aa10.77□□□□□ -0.69
NUP88-201ENST00000225696 FAM24AA6NFZ4 105 aa10.77□□□□□ -0.69
NUP88-201ENST00000225696 K7N7A8 449 aa10.77□□□□□ -0.69
NUP88-201ENST00000225696 M0R135 149 aa10.77□□□□□ -0.69
NUP88-201ENST00000225696 SLC33A1O00400 549 aaPredicted RBP10.77□□□□□ -0.69
NUP88-201ENST00000225696 OR2C1O95371 312 aa10.77□□□□□ -0.69
NUP88-201ENST00000225696 ONECUT2O95948 504 aa10.77□□□□□ -0.69
NUP88-201ENST00000225696 MSR1P21757 451 aa10.77□□□□□ -0.69
NUP88-201ENST00000225696 CEBPGP53567 150 aa10.77□□□□□ -0.69
NUP88-201ENST00000225696 STARD6P59095 220 aa10.77□□□□□ -0.69
NUP88-201ENST00000225696 HEPN1Q6WQI6 88 aa10.77□□□□□ -0.69
NUP88-201ENST00000225696 FBXW12Q6X9E4 464 aa10.77□□□□□ -0.69
NUP88-201ENST00000225696 MEX3BQ6ZN04 569 aaKnown RBP10.77□□□□□ -0.69
NUP88-201ENST00000225696 LIAT1Q6ZQX7 453 aa10.77□□□□□ -0.69
NUP88-201ENST00000225696 ADPRHL1Q8NDY3 354 aa10.77□□□□□ -0.69
NUP88-201ENST00000225696 TSTD1Q8NFU3 115 aa10.77□□□□□ -0.69
NUP88-201ENST00000225696 OR10AD1Q8NGE0 317 aa10.77□□□□□ -0.69
NUP88-201ENST00000225696 SLC22A8Q8TCC7 542 aa10.77□□□□□ -0.69
NUP88-201ENST00000225696 PP6455Q8WZ26 134 aa10.77□□□□□ -0.69
NUP88-201ENST00000225696 GALNT14Q96FL9 552 aa10.77□□□□□ -0.69
NUP88-201ENST00000225696 ZNF799Q96GE5 643 aa10.77□□□□□ -0.69
NUP88-201ENST00000225696 KCNIP3Q9Y2W7 256 aa10.77□□□□□ -0.69
NUP88-201ENST00000225696 DUX1O43812 170 aa10.76□□□□□ -0.69
NUP88-201ENST00000225696 PIAS2O75928 621 aa10.76□□□□□ -0.69
NUP88-201ENST00000225696 PATE4P0C8F1 98 aa10.76□□□□□ -0.69
NUP88-201ENST00000225696 SUCLG1P53597 346 aaKnown RBP10.76□□□□□ -0.69
NUP88-201ENST00000225696 HNRNPKP61978 463 aaKnown RBP eCLIP10.76□□□□□ -0.69
NUP88-201ENST00000225696 RHEBQ15382 184 aa10.76□□□□□ -0.69
NUP88-201ENST00000225696 RSU1Q15404 277 aa10.76□□□□□ -0.69
NUP88-201ENST00000225696 NKAIN1Q4KMZ8 207 aa10.76□□□□□ -0.69
NUP88-201ENST00000225696 SLC22A25Q6T423 547 aa10.76□□□□□ -0.69
NUP88-201ENST00000225696 ZNF574Q6ZN55 896 aaPredicted RBP10.76□□□□□ -0.69
NUP88-201ENST00000225696 SLC35G3Q8N808 338 aa10.76□□□□□ -0.69
NUP88-201ENST00000225696 ZFP62Q8NB50 900 aaPredicted RBP10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms