RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 SDHAF3Q9NRP4 125 aa9.27□□□□□ -0.93
USP28-201ENST00000003302 SEMA5BQ9P283 1151 aa9.27□□□□□ -0.93
USP28-201ENST00000003302 CACFD1Q9UGQ2 172 aa9.27□□□□□ -0.93
USP28-201ENST00000003302 LINC00587B1AMM8 73 aa9.27□□□□□ -0.93
USP28-201ENST00000003302 DHRS3O75911 302 aa9.27□□□□□ -0.93
USP28-201ENST00000003302 CHRM2P08172 466 aa9.27□□□□□ -0.93
USP28-201ENST00000003302 HNF4GQ14541 408 aa9.27□□□□□ -0.93
USP28-201ENST00000003302 MEX3BQ6ZN04 569 aaKnown RBP9.27□□□□□ -0.93
USP28-201ENST00000003302 FBXL14Q8N1E6 418 aa9.27□□□□□ -0.93
USP28-201ENST00000003302 TMEM171Q8WVE6 324 aa9.27□□□□□ -0.93
USP28-201ENST00000003302 OXGR1Q96P68 337 aa9.27□□□□□ -0.93
USP28-201ENST00000003302 SNRNP70P08621 437 aaKnown RBP9.26□□□□□ -0.93
USP28-201ENST00000003302 ZNF92Q03936 586 aa9.26□□□□□ -0.93
USP28-201ENST00000003302 MR1Q95460 341 aa9.26□□□□□ -0.93
USP28-201ENST00000003302 DEFB126Q9BYW3 111 aa9.26□□□□□ -0.93
USP28-201ENST00000003302 CHST5Q9GZS9 411 aa9.26□□□□□ -0.93
USP28-201ENST00000003302 PINLYPA6NC86 204 aa9.26□□□□□ -0.93
USP28-201ENST00000003302 LILRA1O75019 489 aa9.26□□□□□ -0.93
USP28-201ENST00000003302 KLF7O75840 302 aaPredicted RBP9.26□□□□□ -0.93
USP28-201ENST00000003302 PRF1P14222 555 aa9.26□□□□□ -0.93
USP28-201ENST00000003302 CSNK1A1P48729 337 aa9.26□□□□□ -0.93
USP28-201ENST00000003302 AFF3P51826 1226 aaKnown RBP9.26□□□□□ -0.93
USP28-201ENST00000003302 DOK3Q7L591 496 aa9.26□□□□□ -0.93
USP28-201ENST00000003302 NANPQ8TBE9 248 aa9.26□□□□□ -0.93
USP28-201ENST00000003302 ABHD3Q8WU67 409 aa9.26□□□□□ -0.93
USP28-201ENST00000003302 ANXA10Q9UJ72 324 aa9.26□□□□□ -0.93
USP28-201ENST00000003302 ZNF727A8MUV8 499 aa9.26□□□□□ -0.93
USP28-201ENST00000003302 DEDDO75618 318 aa9.26□□□□□ -0.93
USP28-201ENST00000003302 RUNX1Q01196 453 aa9.26□□□□□ -0.93
USP28-201ENST00000003302 CLINT1Q14677 625 aa9.26□□□□□ -0.93
USP28-201ENST00000003302 FADS6Q8N9I5 356 aa9.26□□□□□ -0.93
USP28-201ENST00000003302 SFT2D1Q8WV19 159 aa9.26□□□□□ -0.93
USP28-201ENST00000003302 THRSPQ92748 146 aa9.26□□□□□ -0.93
USP28-201ENST00000003302 HAS2Q92819 552 aa9.26□□□□□ -0.93
USP28-201ENST00000003302 CACNA1HO95180 2353 aa9.26□□□□□ -0.93
USP28-201ENST00000003302 K7EPK0 472 aa9.26□□□□□ -0.93
USP28-201ENST00000003302 OR13C7P0DN81 318 aa9.26□□□□□ -0.93
USP28-201ENST00000003302 FLI1Q01543 452 aaPredicted RBP9.26□□□□□ -0.93
USP28-201ENST00000003302 AWAT1Q58HT5 328 aa9.26□□□□□ -0.93
USP28-201ENST00000003302 WDR74Q6RFH5 385 aaPredicted RBP9.26□□□□□ -0.93
USP28-201ENST00000003302 FAM71E2Q8N5Q1 922 aa9.26□□□□□ -0.93
USP28-201ENST00000003302 KIRREL1Q96J84 757 aa9.26□□□□□ -0.93
USP28-201ENST00000003302 HS3ST3B1Q9Y662 390 aa9.26□□□□□ -0.93
USP28-201ENST00000003302 CELSR1Q9NYQ6 3014 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 K7ESF4 209 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 OTX1P32242 354 aaPredicted RBP9.25□□□□□ -0.93
USP28-201ENST00000003302 ECH1Q13011 328 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 SLC25A53Q5H9E4 307 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 FAM24BQ8N5W8 94 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 DMBX1Q8NFW5 382 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 OR9K2Q8NGE7 335 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 HIST1H2BAQ96A08 127 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 ZNF488Q96MN9 340 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 FBXO9Q9UK97 447 aaPredicted RBP9.25□□□□□ -0.93
USP28-201ENST00000003302 PADI1Q9ULC6 663 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 NPIPB13A6NJU9 1138 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 ZNF850A8MQ14 1090 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 NPIPB4C9JG80 1138 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 ZNF32P17041 273 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 MSR1P21757 451 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 PNLIPRP3Q17RR3 467 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 CCDC157Q569K6 752 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 ZNF343Q6P1L6 599 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 SLC22A25Q6T423 547 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 SULF2Q8IWU5 870 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 C17orf78Q8N4C9 275 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 PRRX2Q99811 253 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 SEC11CQ9BY50 192 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 NELFAQ9H3P2 528 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 PRDM6Q9NQX0 595 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 SLC2A9Q9NRM0 540 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 DEPPQ9NTK1 212 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 FOXD3Q9UJU5 478 aaPredicted RBP9.25□□□□□ -0.93
USP28-201ENST00000003302 V9GYS6 101 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 CRYM-AS1A6NIL9 109 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 ARGFXA6NJG6 315 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 ZFAND5O76080 213 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 IFNA2P01563 188 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 Q0VFX4 171 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 MRPL14Q6P1L8 145 aaKnown RBP9.25□□□□□ -0.93
USP28-201ENST00000003302 RPS10P5Q9NQ39 176 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 ZFP57Q9NU63 452 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 IGKV1D-13A0A0B4J2D9 117 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 CELA3AP09093 270 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 IGKV1-13P0DP09 117 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 TSC22D1Q15714 1073 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 RAB30Q15771 203 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 ZNF239Q16600 458 aaKnown RBP9.25□□□□□ -0.93
USP28-201ENST00000003302 CXorf66Q5JRM2 361 aaPredicted RBP9.25□□□□□ -0.93
USP28-201ENST00000003302 C20orf204Q6ZNR8 217 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 RAB11FIP2Q7L804 512 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 CPEB3Q8NE35 698 aaKnown RBP9.25□□□□□ -0.93
USP28-201ENST00000003302 RTN4IP1Q8WWV3 396 aaPredicted RBP9.25□□□□□ -0.93
USP28-201ENST00000003302 OR51B6Q9H340 312 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 VPS13CQ709C8 3753 aa9.25□□□□□ -0.93
USP28-201ENST00000003302 A0A096LPE4 126 aa9.24□□□□□ -0.93
USP28-201ENST00000003302 A0A1W2PPZ6 126 aa9.24□□□□□ -0.93
USP28-201ENST00000003302 FAM24AA6NFZ4 105 aa9.24□□□□□ -0.93
USP28-201ENST00000003302 H3BP45 60 aa9.24□□□□□ -0.93
USP28-201ENST00000003302 DHHO43323 396 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms