RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 CD300LDQ6UXZ3 194 aa15.6■□□□□ 0.09
CLN3-262ENST00000637699 ADGRG5Q8IZF4 528 aa15.6■□□□□ 0.09
CLN3-262ENST00000637699 LRGUKQ96M69 825 aa15.6■□□□□ 0.09
CLN3-262ENST00000637699 OR8B4Q96RC9 309 aa15.6■□□□□ 0.09
CLN3-262ENST00000637699 FEVQ99581 238 aa15.6■□□□□ 0.09
CLN3-262ENST00000637699 FAM206AQ9NX38 181 aa15.6■□□□□ 0.09
CLN3-262ENST00000637699 HILPDAQ9Y5L2 63 aa15.6■□□□□ 0.09
CLN3-262ENST00000637699 J3QT63 122 aa15.59■□□□□ 0.09
CLN3-262ENST00000637699 F2RL2O00254 374 aa15.59■□□□□ 0.09
CLN3-262ENST00000637699 NRASP01111 189 aa15.59■□□□□ 0.09
CLN3-262ENST00000637699 ATP6V1B1P15313 513 aa15.59■□□□□ 0.09
CLN3-262ENST00000637699 OR12D2P58182 307 aa15.59■□□□□ 0.09
CLN3-262ENST00000637699 RPS7P62081 194 aaKnown RBP15.59■□□□□ 0.09
CLN3-262ENST00000637699 CD83Q01151 205 aa15.59■□□□□ 0.09
CLN3-262ENST00000637699 GINS1Q14691 196 aa15.59■□□□□ 0.09
CLN3-262ENST00000637699 ZNF626Q68DY1 528 aa15.59■□□□□ 0.09
CLN3-262ENST00000637699 ZNF573Q86YE8 665 aa15.59■□□□□ 0.09
CLN3-262ENST00000637699 CPOQ8IVL8 374 aa15.59■□□□□ 0.09
CLN3-262ENST00000637699 TEAD3Q99594 435 aa15.59■□□□□ 0.09
CLN3-262ENST00000637699 CHID1Q9BWS9 393 aa15.59■□□□□ 0.09
CLN3-262ENST00000637699 PBOV1Q9GZY1 135 aa15.59■□□□□ 0.09
CLN3-262ENST00000637699 ENPP5Q9UJA9 477 aa15.59■□□□□ 0.09
CLN3-262ENST00000637699 ACOD1A6NK06 481 aa15.58■□□□□ 0.08
CLN3-262ENST00000637699 PRODHO43272 600 aa15.58■□□□□ 0.08
CLN3-262ENST00000637699 NOS1APO75052 506 aaPredicted RBP15.58■□□□□ 0.08
CLN3-262ENST00000637699 ZNF728P0DKX0 622 aa15.58■□□□□ 0.08
CLN3-262ENST00000637699 CCDC121Q6ZUS5 278 aa15.58■□□□□ 0.08
CLN3-262ENST00000637699 ASCC1Q8N9N2 400 aaKnown RBP15.58■□□□□ 0.08
CLN3-262ENST00000637699 BBS1Q8NFJ9 593 aa15.58■□□□□ 0.08
CLN3-262ENST00000637699 OR11H6Q8NGC7 330 aa15.58■□□□□ 0.08
CLN3-262ENST00000637699 CANT1Q8WVQ1 401 aa15.58■□□□□ 0.08
CLN3-262ENST00000637699 SLC7A6OSQ96CW6 309 aaPredicted RBP15.58■□□□□ 0.08
CLN3-262ENST00000637699 NRIP2Q9BQI9 281 aa15.58■□□□□ 0.08
CLN3-262ENST00000637699 OCSTAMPQ9BR26 566 aa15.58■□□□□ 0.08
CLN3-262ENST00000637699 GPR173Q9NS66 373 aa15.58■□□□□ 0.08
CLN3-262ENST00000637699 WI2-2373I1.2A0A1W2PRP0 233 aa15.57■□□□□ 0.08
CLN3-262ENST00000637699 CST1P01037 141 aa15.57■□□□□ 0.08
CLN3-262ENST00000637699 PF4P02776 101 aa15.57■□□□□ 0.08
CLN3-262ENST00000637699 ALDOBP05062 364 aa15.57■□□□□ 0.08
CLN3-262ENST00000637699 IGHV1-8P0DP01 117 aa15.57■□□□□ 0.08
CLN3-262ENST00000637699 EDDM3BP56851 147 aa15.57■□□□□ 0.08
CLN3-262ENST00000637699 COL10A1Q03692 680 aa15.57■□□□□ 0.08
CLN3-262ENST00000637699 SLC34A1Q06495 639 aa15.57■□□□□ 0.08
CLN3-262ENST00000637699 KCTD18Q6PI47 426 aaPredicted RBP15.57■□□□□ 0.08
CLN3-262ENST00000637699 ASRGL1Q7L266 308 aa15.57■□□□□ 0.08
CLN3-262ENST00000637699 CENPVQ7Z7K6 275 aaPredicted RBP15.57■□□□□ 0.08
CLN3-262ENST00000637699 TMEM179BQ7Z7N9 219 aa15.57■□□□□ 0.08
CLN3-262ENST00000637699 GIPC3Q8TF64 312 aa15.57■□□□□ 0.08
CLN3-262ENST00000637699 ITFG2Q969R8 447 aa15.57■□□□□ 0.08
CLN3-262ENST00000637699 POLDIP2Q9Y2S7 368 aa15.57■□□□□ 0.08
CLN3-262ENST00000637699 TCRBV4S1A1TA0A5B7 111 aa15.56■□□□□ 0.08
CLN3-262ENST00000637699 AQP12BA6NM10 295 aa15.56■□□□□ 0.08
CLN3-262ENST00000637699 K7N7A8 449 aa15.56■□□□□ 0.08
CLN3-262ENST00000637699 GYG2O15488 501 aa15.56■□□□□ 0.08
CLN3-262ENST00000637699 IGLV3-1P01715 115 aa15.56■□□□□ 0.08
CLN3-262ENST00000637699 DYNLT3P51808 116 aa15.56■□□□□ 0.08
CLN3-262ENST00000637699 KRTAP10-11P60412 298 aa15.56■□□□□ 0.08
CLN3-262ENST00000637699 ESRRGP62508 458 aa15.56■□□□□ 0.08
CLN3-262ENST00000637699 SLC35A2P78381 396 aa15.56■□□□□ 0.08
CLN3-262ENST00000637699 TCTEX1D4Q5JR98 221 aa15.56■□□□□ 0.08
CLN3-262ENST00000637699 SLC35D3Q5M8T2 416 aa15.56■□□□□ 0.08
CLN3-262ENST00000637699 AQP12AQ8IXF9 295 aa15.56■□□□□ 0.08
CLN3-262ENST00000637699 MROQ9BYG7 248 aa15.56■□□□□ 0.08
CLN3-262ENST00000637699 TTTY10Q9BZA0 68 aa15.56■□□□□ 0.08
CLN3-262ENST00000637699 HES4Q9HCC6 221 aa15.56■□□□□ 0.08
CLN3-262ENST00000637699 SLC22A13Q9Y226 551 aa15.56■□□□□ 0.08
CLN3-262ENST00000637699 PQLC2LA1A4F0 135 aa15.55■□□□□ 0.08
CLN3-262ENST00000637699 A6NIN4 97 aa15.55■□□□□ 0.08
CLN3-262ENST00000637699 DHRS3O75911 302 aa15.55■□□□□ 0.08
CLN3-262ENST00000637699 RBP4P02753 201 aa15.55■□□□□ 0.08
CLN3-262ENST00000637699 HMGN1P05114 100 aa15.55■□□□□ 0.08
CLN3-262ENST00000637699 MRPL3P09001 348 aaKnown RBP15.55■□□□□ 0.08
CLN3-262ENST00000637699 ACTA2P62736 377 aa15.55■□□□□ 0.08
CLN3-262ENST00000637699 ACTG2P63267 376 aa15.55■□□□□ 0.08
CLN3-262ENST00000637699 ACTC1P68032 377 aa15.55■□□□□ 0.08
CLN3-262ENST00000637699 ACTA1P68133 377 aa15.55■□□□□ 0.08
CLN3-262ENST00000637699 APOFQ13790 326 aa15.55■□□□□ 0.08
CLN3-262ENST00000637699 CLVS2Q5SYC1 327 aa15.55■□□□□ 0.08
CLN3-262ENST00000637699 DEGS2Q6QHC5 323 aa15.55■□□□□ 0.08
CLN3-262ENST00000637699 GDPD3Q7L5L3 318 aa15.55■□□□□ 0.08
CLN3-262ENST00000637699 ANGPTL5Q86XS5 388 aa15.55■□□□□ 0.08
CLN3-262ENST00000637699 NDNFQ8TB73 568 aa15.55■□□□□ 0.08
CLN3-262ENST00000637699 YIPF3Q9GZM5 350 aa15.55■□□□□ 0.08
CLN3-262ENST00000637699 GTF2A1LQ9UNN4 478 aa15.55■□□□□ 0.08
CLN3-262ENST00000637699 PRR32B1ATL7 298 aa15.54■□□□□ 0.08
CLN3-262ENST00000637699 TTRP02766 147 aa15.54■□□□□ 0.08
CLN3-262ENST00000637699 SLC2A5P22732 501 aa15.54■□□□□ 0.08
CLN3-262ENST00000637699 MFGE8Q08431 387 aaPredicted RBP15.54■□□□□ 0.08
CLN3-262ENST00000637699 DNAL1Q4LDG9 190 aa15.54■□□□□ 0.08
CLN3-262ENST00000637699 RCC1LQ96I51 464 aaKnown RBP15.54■□□□□ 0.08
CLN3-262ENST00000637699 ZNF714Q96N38 554 aa15.54■□□□□ 0.08
CLN3-262ENST00000637699 NUFIP1Q9UHK0 495 aaKnown RBP15.54■□□□□ 0.08
CLN3-262ENST00000637699 TSSC4Q9Y5U2 329 aaPredicted RBP15.54■□□□□ 0.08
CLN3-262ENST00000637699 H3BUI4 141 aa15.53■□□□□ 0.08
CLN3-262ENST00000637699 ZNF254O75437 659 aa15.53■□□□□ 0.08
CLN3-262ENST00000637699 AZGP1P25311 298 aaKnown RBP15.53■□□□□ 0.08
CLN3-262ENST00000637699 HOXD3P31249 432 aaPredicted RBP15.53■□□□□ 0.08
CLN3-262ENST00000637699 RIDAP52758 137 aaKnown RBP15.53■□□□□ 0.08
CLN3-262ENST00000637699 ERVK11-1P61568 191 aa15.53■□□□□ 0.08
CLN3-262ENST00000637699 FLOT2Q14254 428 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms