RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 CEP78Q5JTW2 689 aa15.92■□□□□ 0.14
CLN3-260ENST00000637578 TMEM244Q5VVB8 128 aa15.92■□□□□ 0.14
CLN3-260ENST00000637578 DUX4L9Q6RFH8 374 aaPredicted RBP15.92■□□□□ 0.14
CLN3-260ENST00000637578 KCTD8Q6ZWB6 473 aa15.92■□□□□ 0.14
CLN3-260ENST00000637578 BTN2A1Q7KYR7 527 aa15.92■□□□□ 0.14
CLN3-260ENST00000637578 SLC36A1Q7Z2H8 476 aa15.92■□□□□ 0.14
CLN3-260ENST00000637578 ZFP41Q8N8Y5 198 aa15.92■□□□□ 0.14
CLN3-260ENST00000637578 OR14K1Q8NGZ2 314 aa15.92■□□□□ 0.14
CLN3-260ENST00000637578 OR10AC1Q8NH08 325 aa15.92■□□□□ 0.14
CLN3-260ENST00000637578 DMRTB1Q96MA1 342 aa15.92■□□□□ 0.14
CLN3-260ENST00000637578 C1orf147Q96MC9 270 aaPredicted RBP15.92■□□□□ 0.14
CLN3-260ENST00000637578 DUX4Q9UBX2 424 aa15.92■□□□□ 0.14
CLN3-260ENST00000637578 FBN3Q75N90 2809 aa15.91■□□□□ 0.14
CLN3-260ENST00000637578 TRAV40A0A0B4J280 105 aa15.91■□□□□ 0.14
CLN3-260ENST00000637578 TMEM212A6NML5 194 aa15.91■□□□□ 0.14
CLN3-260ENST00000637578 OGG1O15527 345 aa15.91■□□□□ 0.14
CLN3-260ENST00000637578 AKR7A2O43488 359 aa15.91■□□□□ 0.14
CLN3-260ENST00000637578 RHBDL1O75783 438 aa15.91■□□□□ 0.14
CLN3-260ENST00000637578 NRASP01111 189 aa15.91■□□□□ 0.14
CLN3-260ENST00000637578 ISG15P05161 165 aa15.91■□□□□ 0.14
CLN3-260ENST00000637578 RBMS3Q6XE24 437 aaKnown RBP15.91■□□□□ 0.14
CLN3-260ENST00000637578 MOB3CQ70IA8 216 aa15.91■□□□□ 0.14
CLN3-260ENST00000637578 FAM216BQ8N7L0 139 aa15.91■□□□□ 0.14
CLN3-260ENST00000637578 LY6G5BQ8NDX9 201 aa15.91■□□□□ 0.14
CLN3-260ENST00000637578 OR5AK2Q8NH90 309 aa15.91■□□□□ 0.14
CLN3-260ENST00000637578 ANGPTL6Q8NI99 470 aa15.91■□□□□ 0.14
CLN3-260ENST00000637578 AQP3Q92482 292 aa15.91■□□□□ 0.14
CLN3-260ENST00000637578 PRDM13Q9H4Q3 707 aa15.91■□□□□ 0.14
CLN3-260ENST00000637578 RPUSD1Q9UJJ7 312 aaKnown RBP15.91■□□□□ 0.14
CLN3-260ENST00000637578 IGHV3OR16-10A0A075B7F0 116 aa15.9■□□□□ 0.14
CLN3-260ENST00000637578 GPR37O15354 613 aa15.9■□□□□ 0.14
CLN3-260ENST00000637578 TAS2R43P59537 309 aa15.9■□□□□ 0.14
CLN3-260ENST00000637578 SPHARQ15513 63 aa15.9■□□□□ 0.14
CLN3-260ENST00000637578 DMRTC1Q5HYR2 192 aa15.9■□□□□ 0.14
CLN3-260ENST00000637578 DMKNQ6E0U4 476 aaPredicted RBP15.9■□□□□ 0.14
CLN3-260ENST00000637578 ZNF788Q6ZQV5 615 aa15.9■□□□□ 0.14
CLN3-260ENST00000637578 FGFRL1Q8N441 504 aa15.9■□□□□ 0.14
CLN3-260ENST00000637578 OR5T2Q8NGG2 359 aa15.9■□□□□ 0.14
CLN3-260ENST00000637578 OR51A4Q8NGJ6 313 aa15.9■□□□□ 0.14
CLN3-260ENST00000637578 SMIM19Q96E16 107 aa15.9■□□□□ 0.14
CLN3-260ENST00000637578 WDFY2Q96P53 400 aa15.9■□□□□ 0.14
CLN3-260ENST00000637578 TBX15Q96SF7 602 aa15.9■□□□□ 0.14
CLN3-260ENST00000637578 COMMD4Q9H0A8 199 aa15.9■□□□□ 0.14
CLN3-260ENST00000637578 SIRPDQ9H106 197 aa15.9■□□□□ 0.14
CLN3-260ENST00000637578 SOX21Q9Y651 276 aaPredicted RBP15.9■□□□□ 0.14
CLN3-260ENST00000637578 PNMA8CA0A1B0GUJ8 204 aa15.89■□□□□ 0.13
CLN3-260ENST00000637578 A6NIN4 97 aa15.89■□□□□ 0.13
CLN3-260ENST00000637578 CLDN34H7C241 214 aa15.89■□□□□ 0.13
CLN3-260ENST00000637578 SFTPBP07988 381 aa15.89■□□□□ 0.13
CLN3-260ENST00000637578 PRTN3P24158 256 aa15.89■□□□□ 0.13
CLN3-260ENST00000637578 MED22Q15528 200 aa15.89■□□□□ 0.13
CLN3-260ENST00000637578 TBCEQ15813 527 aaPredicted RBP15.89■□□□□ 0.13
CLN3-260ENST00000637578 KCTD21Q4G0X4 260 aa15.89■□□□□ 0.13
CLN3-260ENST00000637578 CLVS2Q5SYC1 327 aa15.89■□□□□ 0.13
CLN3-260ENST00000637578 PLCXD3Q63HM9 321 aa15.89■□□□□ 0.13
CLN3-260ENST00000637578 ZNF671Q8TAW3 534 aa15.89■□□□□ 0.13
CLN3-260ENST00000637578 ST8SIA4Q92187 359 aa15.89■□□□□ 0.13
CLN3-260ENST00000637578 RGP1Q92546 391 aaPredicted RBP15.89■□□□□ 0.13
CLN3-260ENST00000637578 ZMAT3Q9HA38 289 aaKnown RBP15.89■□□□□ 0.13
CLN3-260ENST00000637578 NLKQ9UBE8 527 aa15.89■□□□□ 0.13
CLN3-260ENST00000637578 DNAJB11Q9UBS4 358 aa15.89■□□□□ 0.13
CLN3-260ENST00000637578 HHLA2Q9UM44 414 aa15.89■□□□□ 0.13
CLN3-260ENST00000637578 MRPS14O60783 128 aaKnown RBP15.88■□□□□ 0.13
CLN3-260ENST00000637578 TOX4O94842 621 aa15.88■□□□□ 0.13
CLN3-260ENST00000637578 BDH1Q02338 343 aa15.88■□□□□ 0.13
CLN3-260ENST00000637578 ACSM1Q08AH1 577 aa15.88■□□□□ 0.13
CLN3-260ENST00000637578 CCDC54Q8NEL0 328 aa15.88■□□□□ 0.13
CLN3-260ENST00000637578 C8orf46Q8TAG6 207 aa15.88■□□□□ 0.13
CLN3-260ENST00000637578 GAFA1Q96PS6 74 aa15.88■□□□□ 0.13
CLN3-260ENST00000637578 PCGF1Q9BSM1 259 aa15.88■□□□□ 0.13
CLN3-260ENST00000637578 CNTD2Q9H8S5 307 aa15.88■□□□□ 0.13
CLN3-260ENST00000637578 PLEKHA1Q9HB21 404 aa15.88■□□□□ 0.13
CLN3-260ENST00000637578 SNTG1Q9NSN8 517 aa15.88■□□□□ 0.13
CLN3-260ENST00000637578 PQLC2LA1A4F0 135 aa15.87■□□□□ 0.13
CLN3-260ENST00000637578 DNAJC9-AS1A6NH13 148 aa15.87■□□□□ 0.13
CLN3-260ENST00000637578 OR2AT4A6NND4 320 aa15.87■□□□□ 0.13
CLN3-260ENST00000637578 NDUFB3O43676 98 aa15.87■□□□□ 0.13
CLN3-260ENST00000637578 ACAA1P09110 424 aaPredicted RBP15.87■□□□□ 0.13
CLN3-260ENST00000637578 CELP19835 753 aa15.87■□□□□ 0.13
CLN3-260ENST00000637578 GLRA1P23415 457 aa15.87■□□□□ 0.13
CLN3-260ENST00000637578 ACTG1P63261 375 aa15.87■□□□□ 0.13
CLN3-260ENST00000637578 GPR157Q5UAW9 335 aa15.87■□□□□ 0.13
CLN3-260ENST00000637578 HAGHLQ6PII5 290 aaPredicted RBP15.87■□□□□ 0.13
CLN3-260ENST00000637578 SPARTQ8N0X7 666 aa15.87■□□□□ 0.13
CLN3-260ENST00000637578 GHSRQ92847 366 aa15.87■□□□□ 0.13
CLN3-260ENST00000637578 MED30Q96HR3 178 aa15.87■□□□□ 0.13
CLN3-260ENST00000637578 PGLYRP3Q96LB9 341 aa15.87■□□□□ 0.13
CLN3-260ENST00000637578 RASL12Q9NYN1 266 aa15.87■□□□□ 0.13
CLN3-260ENST00000637578 ZNF222Q9UK12 451 aa15.87■□□□□ 0.13
CLN3-260ENST00000637578 KPTNQ9Y664 436 aa15.87■□□□□ 0.13
CLN3-260ENST00000637578 IGKV1D-17A0A075B6S4 117 aa15.87■□□□□ 0.13
CLN3-260ENST00000637578 CENPVL3A0A0U1RRI6 287 aa15.87■□□□□ 0.13
CLN3-260ENST00000637578 SIGLEC5O15389 551 aa15.87■□□□□ 0.13
CLN3-260ENST00000637578 SELLP14151 372 aa15.87■□□□□ 0.13
CLN3-260ENST00000637578 GMFBP60983 142 aa15.87■□□□□ 0.13
CLN3-260ENST00000637578 EMX1Q04741 257 aaPredicted RBP15.87■□□□□ 0.13
CLN3-260ENST00000637578 BAMBIQ13145 260 aa15.87■□□□□ 0.13
CLN3-260ENST00000637578 DGUOKQ16854 277 aa15.87■□□□□ 0.13
CLN3-260ENST00000637578 LRRC10Q5BKY1 277 aa15.87■□□□□ 0.13
CLN3-260ENST00000637578 METTL11BQ5VVY1 283 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms