RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 ZNF788Q6ZQV5 615 aa17.2■□□□□ 0.34
CLN3-240ENST00000631023 C1orf229Q6ZS94 237 aaPredicted RBP17.2■□□□□ 0.34
CLN3-240ENST00000631023 NANOGP1Q8N7R0 232 aa17.2■□□□□ 0.34
CLN3-240ENST00000631023 ZNF485Q8NCK3 441 aa17.2■□□□□ 0.34
CLN3-240ENST00000631023 ST8SIA4Q92187 359 aa17.2■□□□□ 0.34
CLN3-240ENST00000631023 NRIP2Q9BQI9 281 aa17.2■□□□□ 0.34
CLN3-240ENST00000631023 RRP15Q9Y3B9 282 aaKnown RBP17.2■□□□□ 0.34
CLN3-240ENST00000631023 IGKV1-27A0A075B6S5 117 aa17.19■□□□□ 0.34
CLN3-240ENST00000631023 ALX3O95076 343 aa17.19■□□□□ 0.34
CLN3-240ENST00000631023 LALBAP00709 142 aa17.19■□□□□ 0.34
CLN3-240ENST00000631023 PSG2P11465 335 aa17.19■□□□□ 0.34
CLN3-240ENST00000631023 RNLSQ5VYX0 342 aa17.19■□□□□ 0.34
CLN3-240ENST00000631023 C1QL2Q7Z5L3 287 aa17.19■□□□□ 0.34
CLN3-240ENST00000631023 MKXQ8IYA7 352 aa17.19■□□□□ 0.34
CLN3-240ENST00000631023 FAM216BQ8N7L0 139 aa17.19■□□□□ 0.34
CLN3-240ENST00000631023 PNLDC1Q8NA58 520 aaKnown RBP17.19■□□□□ 0.34
CLN3-240ENST00000631023 OR13C9Q8NGT0 318 aa17.19■□□□□ 0.34
CLN3-240ENST00000631023 ZNF488Q96MN9 340 aa17.19■□□□□ 0.34
CLN3-240ENST00000631023 SMURF1Q9HCE7 757 aa17.19■□□□□ 0.34
CLN3-240ENST00000631023 OPN4Q9UHM6 478 aa17.19■□□□□ 0.34
CLN3-240ENST00000631023 SIRT4Q9Y6E7 314 aaPredicted RBP17.19■□□□□ 0.34
CLN3-240ENST00000631023 PLATP00750 562 aa17.19■□□□□ 0.34
CLN3-240ENST00000631023 AMY2BP19961 511 aa17.19■□□□□ 0.34
CLN3-240ENST00000631023 IKZF1Q13422 519 aa17.19■□□□□ 0.34
CLN3-240ENST00000631023 DMKNQ6E0U4 476 aaPredicted RBP17.19■□□□□ 0.34
CLN3-240ENST00000631023 SLC25A26Q70HW3 274 aa17.19■□□□□ 0.34
CLN3-240ENST00000631023 GHSRQ92847 366 aa17.19■□□□□ 0.34
CLN3-240ENST00000631023 DACT3Q96B18 629 aaPredicted RBP17.19■□□□□ 0.34
CLN3-240ENST00000631023 CEP19Q96LK0 163 aa17.19■□□□□ 0.34
CLN3-240ENST00000631023 CNBD2Q96M20 576 aa17.19■□□□□ 0.34
CLN3-240ENST00000631023 MND1Q9BWT6 205 aa17.19■□□□□ 0.34
CLN3-240ENST00000631023 CDCA4Q9BXL8 241 aa17.19■□□□□ 0.34
CLN3-240ENST00000631023 IGKV1D-17A0A075B6S4 117 aa17.18■□□□□ 0.34
CLN3-240ENST00000631023 C22orf46C9J442 243 aa17.18■□□□□ 0.34
CLN3-240ENST00000631023 SIGLEC5O15389 551 aa17.18■□□□□ 0.34
CLN3-240ENST00000631023 SULT1B1O43704 296 aa17.18■□□□□ 0.34
CLN3-240ENST00000631023 PPIAL4GP0DN37 164 aa17.18■□□□□ 0.34
CLN3-240ENST00000631023 ADRA2CP18825 462 aa17.18■□□□□ 0.34
CLN3-240ENST00000631023 SOX2P48431 317 aa17.18■□□□□ 0.34
CLN3-240ENST00000631023 SLC35A2P78381 396 aa17.18■□□□□ 0.34
CLN3-240ENST00000631023 YIF1BQ5BJH7 314 aa17.18■□□□□ 0.34
CLN3-240ENST00000631023 BTN2A1Q7KYR7 527 aa17.18■□□□□ 0.34
CLN3-240ENST00000631023 Q8IYB0 196 aa17.18■□□□□ 0.34
CLN3-240ENST00000631023 RGP1Q92546 391 aaPredicted RBP17.18■□□□□ 0.34
CLN3-240ENST00000631023 GAFA1Q96PS6 74 aa17.18■□□□□ 0.34
CLN3-240ENST00000631023 HES4Q9HCC6 221 aa17.18■□□□□ 0.34
CLN3-240ENST00000631023 A0A1B0GW55 424 aa17.17■□□□□ 0.34
CLN3-240ENST00000631023 RFPL4AA6NLU0 287 aa17.17■□□□□ 0.34
CLN3-240ENST00000631023 RFPL4AL1F8VTS6 287 aa17.17■□□□□ 0.34
CLN3-240ENST00000631023 HCKP08631 526 aa17.17■□□□□ 0.34
CLN3-240ENST00000631023 DUX4L2P0CJ85 424 aa17.17■□□□□ 0.34
CLN3-240ENST00000631023 DUX4L3P0CJ86 424 aa17.17■□□□□ 0.34
CLN3-240ENST00000631023 DUX4L4P0CJ87 422 aa17.17■□□□□ 0.34
CLN3-240ENST00000631023 DUX4L5P0CJ88 424 aa17.17■□□□□ 0.34
CLN3-240ENST00000631023 DUX4L6P0CJ89 424 aa17.17■□□□□ 0.34
CLN3-240ENST00000631023 DUX4L7P0CJ90 424 aa17.17■□□□□ 0.34
CLN3-240ENST00000631023 RAB3AP20336 220 aa17.17■□□□□ 0.34
CLN3-240ENST00000631023 POU3F4P49335 361 aa17.17■□□□□ 0.34
CLN3-240ENST00000631023 ERVK11-1P61568 191 aa17.17■□□□□ 0.34
CLN3-240ENST00000631023 ARMCX4Q5H9R4 360 aa17.17■□□□□ 0.34
CLN3-240ENST00000631023 DUX4L9Q6RFH8 374 aaPredicted RBP17.17■□□□□ 0.34
CLN3-240ENST00000631023 ZFP41Q8N8Y5 198 aa17.17■□□□□ 0.34
CLN3-240ENST00000631023 TMEM106AQ96A25 262 aa17.17■□□□□ 0.34
CLN3-240ENST00000631023 CPNE2Q96FN4 548 aaPredicted RBP17.17■□□□□ 0.34
CLN3-240ENST00000631023 DUSP21Q9H596 190 aa17.17■□□□□ 0.34
CLN3-240ENST00000631023 MTCH1Q9NZJ7 389 aa17.17■□□□□ 0.34
CLN3-240ENST00000631023 DUX4Q9UBX2 424 aa17.17■□□□□ 0.34
CLN3-240ENST00000631023 SLC25A10Q9UBX3 287 aaPredicted RBP17.17■□□□□ 0.34
CLN3-240ENST00000631023 ATRQ13535 2644 aa17.16■□□□□ 0.34
CLN3-240ENST00000631023 MAGEB3O15480 346 aa17.16■□□□□ 0.34
CLN3-240ENST00000631023 PRDX2P32119 198 aa17.16■□□□□ 0.34
CLN3-240ENST00000631023 PDZK1IP1Q13113 114 aa17.16■□□□□ 0.34
CLN3-240ENST00000631023 DGUOKQ16854 277 aa17.16■□□□□ 0.34
CLN3-240ENST00000631023 SLAMF9Q96A28 289 aa17.16■□□□□ 0.34
CLN3-240ENST00000631023 SDSLQ96GA7 329 aa17.16■□□□□ 0.34
CLN3-240ENST00000631023 Q9H521 79 aa17.16■□□□□ 0.34
CLN3-240ENST00000631023 ZNF222Q9UK12 451 aa17.16■□□□□ 0.34
CLN3-240ENST00000631023 FCN3O75636 299 aa17.15■□□□□ 0.34
CLN3-240ENST00000631023 INMTO95050 263 aa17.15■□□□□ 0.34
CLN3-240ENST00000631023 KNG1P01042 644 aa17.15■□□□□ 0.34
CLN3-240ENST00000631023 CELP19835 753 aa17.15■□□□□ 0.34
CLN3-240ENST00000631023 CAV3P56539 151 aa17.15■□□□□ 0.34
CLN3-240ENST00000631023 BDH1Q02338 343 aa17.15■□□□□ 0.34
CLN3-240ENST00000631023 FIP1L1Q6UN15 594 aaKnown RBP17.15■□□□□ 0.34
CLN3-240ENST00000631023 BATF2Q8N1L9 274 aa17.15■□□□□ 0.34
CLN3-240ENST00000631023 ZNF561Q8N587 486 aa17.15■□□□□ 0.34
CLN3-240ENST00000631023 DMRTB1Q96MA1 342 aa17.15■□□□□ 0.34
CLN3-240ENST00000631023 ZNF184Q99676 751 aaPredicted RBP17.15■□□□□ 0.34
CLN3-240ENST00000631023 RPUSD1Q9UJJ7 312 aaKnown RBP17.15■□□□□ 0.34
CLN3-240ENST00000631023 BLOC1S6Q9UL45 172 aa17.15■□□□□ 0.34
CLN3-240ENST00000631023 PNMA8CA0A1B0GUJ8 204 aa17.15■□□□□ 0.34
CLN3-240ENST00000631023 RGS10O43665 173 aa17.15■□□□□ 0.34
CLN3-240ENST00000631023 TFF1P04155 84 aa17.15■□□□□ 0.34
CLN3-240ENST00000631023 CD1AP06126 327 aa17.15■□□□□ 0.34
CLN3-240ENST00000631023 NDUFB7P17568 137 aa17.15■□□□□ 0.34
CLN3-240ENST00000631023 EPHA1P21709 976 aa17.15■□□□□ 0.34
CLN3-240ENST00000631023 CRHBPP24387 322 aa17.15■□□□□ 0.34
CLN3-240ENST00000631023 SPHARQ15513 63 aa17.15■□□□□ 0.34
CLN3-240ENST00000631023 Q499Y3 187 aa17.15■□□□□ 0.34
CLN3-240ENST00000631023 RBM48Q5RL73 367 aaKnown RBP17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms