RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 GLCCI1Q86VQ1 547 aa13.79□□□□□ -0.2
CCDC28A-202ENST00000611852 MS4A15Q8N5U1 240 aa13.79□□□□□ -0.2
CCDC28A-202ENST00000611852 ANGPTL6Q8NI99 470 aa13.79□□□□□ -0.2
CCDC28A-202ENST00000611852 UFD1Q92890 307 aa13.79□□□□□ -0.2
CCDC28A-202ENST00000611852 MGLLQ99685 303 aa13.79□□□□□ -0.2
CCDC28A-202ENST00000611852 SSBP3Q9BWW4 388 aaPredicted RBP13.79□□□□□ -0.2
CCDC28A-202ENST00000611852 HES4Q9HCC6 221 aa13.79□□□□□ -0.2
CCDC28A-202ENST00000611852 HIF1ANQ9NWT6 349 aa13.79□□□□□ -0.2
CCDC28A-202ENST00000611852 POLR3KQ9Y2Y1 108 aaPredicted RBP13.79□□□□□ -0.2
CCDC28A-202ENST00000611852 TRAV20A0A0B4J274 112 aa13.78□□□□□ -0.2
CCDC28A-202ENST00000611852 OR2AT4A6NND4 320 aa13.78□□□□□ -0.2
CCDC28A-202ENST00000611852 INAFM1C9JVW0 142 aa13.78□□□□□ -0.2
CCDC28A-202ENST00000611852 TMPRSS2O15393 492 aa13.78□□□□□ -0.2
CCDC28A-202ENST00000611852 PHF1O43189 567 aaPredicted RBP13.78□□□□□ -0.2
CCDC28A-202ENST00000611852 IGFBP3P17936 291 aaPredicted RBP13.78□□□□□ -0.2
CCDC28A-202ENST00000611852 POU3F4P49335 361 aa13.78□□□□□ -0.2
CCDC28A-202ENST00000611852 GNB2P62879 340 aa13.78□□□□□ -0.2
CCDC28A-202ENST00000611852 PDZK1IP1Q13113 114 aa13.78□□□□□ -0.2
CCDC28A-202ENST00000611852 KISS1Q15726 138 aa13.78□□□□□ -0.2
CCDC28A-202ENST00000611852 SMIM21Q3B7S5 101 aa13.78□□□□□ -0.2
CCDC28A-202ENST00000611852 ATPAF1Q5TC12 328 aaPredicted RBP13.78□□□□□ -0.2
CCDC28A-202ENST00000611852 ACP7Q6ZNF0 438 aa13.78□□□□□ -0.2
CCDC28A-202ENST00000611852 ZNF367Q7RTV3 350 aa13.78□□□□□ -0.2
CCDC28A-202ENST00000611852 SPARTQ8N0X7 666 aa13.78□□□□□ -0.2
CCDC28A-202ENST00000611852 BATF2Q8N1L9 274 aa13.78□□□□□ -0.2
CCDC28A-202ENST00000611852 SLAMF9Q96A28 289 aa13.78□□□□□ -0.2
CCDC28A-202ENST00000611852 RFT1Q96AA3 541 aa13.78□□□□□ -0.2
CCDC28A-202ENST00000611852 CEP19Q96LK0 163 aa13.78□□□□□ -0.2
CCDC28A-202ENST00000611852 DERL3Q96Q80 235 aa13.78□□□□□ -0.2
CCDC28A-202ENST00000611852 CCL13Q99616 98 aa13.78□□□□□ -0.2
CCDC28A-202ENST00000611852 TMED9Q9BVK6 235 aa13.78□□□□□ -0.2
CCDC28A-202ENST00000611852 CLN8Q9UBY8 286 aa13.78□□□□□ -0.2
CCDC28A-202ENST00000611852 WNK2Q9Y3S1 2297 aa13.77□□□□□ -0.2
CCDC28A-202ENST00000611852 IGKV1D-17A0A075B6S4 117 aa13.77□□□□□ -0.21
CCDC28A-202ENST00000611852 A0A1W2PPK0 400 aa13.77□□□□□ -0.21
CCDC28A-202ENST00000611852 F8VVB4 439 aa13.77□□□□□ -0.21
CCDC28A-202ENST00000611852 F8VWA3 439 aa13.77□□□□□ -0.21
CCDC28A-202ENST00000611852 SPRY1O43609 319 aaPredicted RBP13.77□□□□□ -0.21
CCDC28A-202ENST00000611852 GPX5O75715 221 aa13.77□□□□□ -0.21
CCDC28A-202ENST00000611852 NXPH2O95156 264 aa13.77□□□□□ -0.21
CCDC28A-202ENST00000611852 CPEP16870 476 aa13.77□□□□□ -0.21
CCDC28A-202ENST00000611852 FSTP19883 344 aa13.77□□□□□ -0.21
CCDC28A-202ENST00000611852 TGFBR2P37173 567 aa13.77□□□□□ -0.21
CCDC28A-202ENST00000611852 PPP3R1P63098 170 aa13.77□□□□□ -0.21
CCDC28A-202ENST00000611852 INSL4Q14641 139 aa13.77□□□□□ -0.21
CCDC28A-202ENST00000611852 WDR25Q64LD2 544 aaPredicted RBP13.77□□□□□ -0.21
CCDC28A-202ENST00000611852 MKXQ8IYA7 352 aa13.77□□□□□ -0.21
CCDC28A-202ENST00000611852 SVOPQ8N4V2 548 aa13.77□□□□□ -0.21
CCDC28A-202ENST00000611852 OR52N4Q8NGI2 321 aa13.77□□□□□ -0.21
CCDC28A-202ENST00000611852 OR5D18Q8NGL1 313 aa13.77□□□□□ -0.21
CCDC28A-202ENST00000611852 THRSPQ92748 146 aa13.77□□□□□ -0.21
CCDC28A-202ENST00000611852 DNTTIP1Q9H147 329 aa13.77□□□□□ -0.21
CCDC28A-202ENST00000611852 VCX3AQ9NNX9 186 aa13.77□□□□□ -0.21
CCDC28A-202ENST00000611852 TMEM138Q9NPI0 162 aa13.77□□□□□ -0.21
CCDC28A-202ENST00000611852 TMEM160Q9NX00 188 aa13.77□□□□□ -0.21
CCDC28A-202ENST00000611852 CKLFQ9UBR5 152 aa13.77□□□□□ -0.21
CCDC28A-202ENST00000611852 TRAV8-7A0A075B6U6 113 aa13.76□□□□□ -0.21
CCDC28A-202ENST00000611852 PPIAL4CA0A0B4J2A2 164 aa13.76□□□□□ -0.21
CCDC28A-202ENST00000611852 A0A1B0GW55 424 aa13.76□□□□□ -0.21
CCDC28A-202ENST00000611852 PIN1P1O15428 100 aa13.76□□□□□ -0.21
CCDC28A-202ENST00000611852 MAGEB3O15480 346 aa13.76□□□□□ -0.21
CCDC28A-202ENST00000611852 FCN3O75636 299 aa13.76□□□□□ -0.21
CCDC28A-202ENST00000611852 SC5DO75845 299 aa13.76□□□□□ -0.21
CCDC28A-202ENST00000611852 INMTO95050 263 aa13.76□□□□□ -0.21
CCDC28A-202ENST00000611852 TFF1P04155 84 aa13.76□□□□□ -0.21
CCDC28A-202ENST00000611852 DUX4L2P0CJ85 424 aa13.76□□□□□ -0.21
CCDC28A-202ENST00000611852 DUX4L3P0CJ86 424 aa13.76□□□□□ -0.21
CCDC28A-202ENST00000611852 DUX4L4P0CJ87 422 aa13.76□□□□□ -0.21
CCDC28A-202ENST00000611852 DUX4L5P0CJ88 424 aa13.76□□□□□ -0.21
CCDC28A-202ENST00000611852 DUX4L6P0CJ89 424 aa13.76□□□□□ -0.21
CCDC28A-202ENST00000611852 DUX4L7P0CJ90 424 aa13.76□□□□□ -0.21
CCDC28A-202ENST00000611852 PSG2P11465 335 aa13.76□□□□□ -0.21
CCDC28A-202ENST00000611852 PCMT1P22061 227 aa13.76□□□□□ -0.21
CCDC28A-202ENST00000611852 MAPK3P27361 379 aaPredicted RBP13.76□□□□□ -0.21
CCDC28A-202ENST00000611852 RPL5P46777 297 aaKnown RBP13.76□□□□□ -0.21
CCDC28A-202ENST00000611852 NPY4RP50391 375 aa13.76□□□□□ -0.21
CCDC28A-202ENST00000611852 ZP1P60852 638 aa13.76□□□□□ -0.21
CCDC28A-202ENST00000611852 ACSM3Q53FZ2 586 aa13.76□□□□□ -0.21
CCDC28A-202ENST00000611852 ZNF773Q6PK81 442 aa13.76□□□□□ -0.21
CCDC28A-202ENST00000611852 DUX4L9Q6RFH8 374 aaPredicted RBP13.76□□□□□ -0.21
CCDC28A-202ENST00000611852 UNQ9370/PRO34162Q6UXP9 181 aa13.76□□□□□ -0.21
CCDC28A-202ENST00000611852 ZNF788Q6ZQV5 615 aa13.76□□□□□ -0.21
CCDC28A-202ENST00000611852 SLC36A1Q7Z2H8 476 aa13.76□□□□□ -0.21
CCDC28A-202ENST00000611852 PHC2Q8IXK0 858 aa13.76□□□□□ -0.21
CCDC28A-202ENST00000611852 FAM216BQ8N7L0 139 aa13.76□□□□□ -0.21
CCDC28A-202ENST00000611852 SMURF1Q9HCE7 757 aa13.76□□□□□ -0.21
CCDC28A-202ENST00000611852 DUX4Q9UBX2 424 aa13.76□□□□□ -0.21
CCDC28A-202ENST00000611852 ZNF222Q9UK12 451 aa13.76□□□□□ -0.21
CCDC28A-202ENST00000611852 IGKV1-12A0A0C4DH73 117 aa13.75□□□□□ -0.21
CCDC28A-202ENST00000611852 TRAPPC2LH3BP13 241 aa13.75□□□□□ -0.21
CCDC28A-202ENST00000611852 CYB5AP00167 134 aa13.75□□□□□ -0.21
CCDC28A-202ENST00000611852 IGKV1D-12P01611 117 aa13.75□□□□□ -0.21
CCDC28A-202ENST00000611852 ALDOBP05062 364 aa13.75□□□□□ -0.21
CCDC28A-202ENST00000611852 BDKRB2P30411 391 aa13.75□□□□□ -0.21
CCDC28A-202ENST00000611852 UBE2UQ5VVX9 321 aa13.75□□□□□ -0.21
CCDC28A-202ENST00000611852 TMEM203Q969S6 136 aa13.75□□□□□ -0.21
CCDC28A-202ENST00000611852 CPNE2Q96FN4 548 aaPredicted RBP13.75□□□□□ -0.21
CCDC28A-202ENST00000611852 GAFA1Q96PS6 74 aa13.75□□□□□ -0.21
CCDC28A-202ENST00000611852 NOX4Q9NPH5 578 aa13.75□□□□□ -0.21
CCDC28A-202ENST00000611852 MMP26Q9NRE1 261 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms