RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 DUX4L9Q6RFH8 374 aaPredicted RBP13.39□□□□□ -0.27
LSM4-206ENST00000600289 USP43Q70EL4 1123 aa13.39□□□□□ -0.27
LSM4-206ENST00000600289 BTN2A1Q7KYR7 527 aa13.39□□□□□ -0.27
LSM4-206ENST00000600289 PARP16Q8N5Y8 322 aa13.39□□□□□ -0.27
LSM4-206ENST00000600289 ZNF485Q8NCK3 441 aa13.39□□□□□ -0.27
LSM4-206ENST00000600289 OR13C3Q8NGS6 347 aa13.39□□□□□ -0.27
LSM4-206ENST00000600289 C8orf46Q8TAG6 207 aa13.39□□□□□ -0.27
LSM4-206ENST00000600289 TRMT10AQ8TBZ6 339 aaKnown RBP13.39□□□□□ -0.27
LSM4-206ENST00000600289 FGGYQ96C11 551 aa13.39□□□□□ -0.27
LSM4-206ENST00000600289 BORCS8Q96FH0 119 aa13.39□□□□□ -0.27
LSM4-206ENST00000600289 SDSLQ96GA7 329 aa13.39□□□□□ -0.27
LSM4-206ENST00000600289 SNTG1Q9NSN8 517 aa13.39□□□□□ -0.27
LSM4-206ENST00000600289 FKBP14Q9NWM8 211 aa13.39□□□□□ -0.27
LSM4-206ENST00000600289 DUX4Q9UBX2 424 aa13.39□□□□□ -0.27
LSM4-206ENST00000600289 RPUSD1Q9UJJ7 312 aaKnown RBP13.39□□□□□ -0.27
LSM4-206ENST00000600289 NUP50Q9UKX7 468 aa13.39□□□□□ -0.27
LSM4-206ENST00000600289 TRRAPQ9Y4A5 3859 aa13.39□□□□□ -0.27
LSM4-206ENST00000600289 TRBV2A0A0J9YWF9 115 aa13.38□□□□□ -0.27
LSM4-206ENST00000600289 ZNF879B4DU55 563 aa13.38□□□□□ -0.27
LSM4-206ENST00000600289 OGG1O15527 345 aa13.38□□□□□ -0.27
LSM4-206ENST00000600289 AZGP1P25311 298 aaKnown RBP13.38□□□□□ -0.27
LSM4-206ENST00000600289 ATP1B3P54709 279 aa13.38□□□□□ -0.27
LSM4-206ENST00000600289 RIPK1Q13546 671 aa13.38□□□□□ -0.27
LSM4-206ENST00000600289 OR2G6Q5TZ20 316 aa13.38□□□□□ -0.27
LSM4-206ENST00000600289 LHFPL2Q6ZUX7 228 aa13.38□□□□□ -0.27
LSM4-206ENST00000600289 C9orf139Q6ZV77 190 aa13.38□□□□□ -0.27
LSM4-206ENST00000600289 OR5T2Q8NGG2 359 aa13.38□□□□□ -0.27
LSM4-206ENST00000600289 PDCD1LG2Q9BQ51 273 aa13.38□□□□□ -0.27
LSM4-206ENST00000600289 RASSF4Q9H2L5 321 aa13.38□□□□□ -0.27
LSM4-206ENST00000600289 CHCHD3Q9NX63 227 aaKnown RBP13.38□□□□□ -0.27
LSM4-206ENST00000600289 BABAM2Q9NXR7 383 aa13.38□□□□□ -0.27
LSM4-206ENST00000600289 DSCAML1Q8TD84 2053 aa13.38□□□□□ -0.27
LSM4-206ENST00000600289 H0YHG0 523 aa13.37□□□□□ -0.27
LSM4-206ENST00000600289 XPNPEP2O43895 674 aa13.37□□□□□ -0.27
LSM4-206ENST00000600289 PLATP00750 562 aa13.37□□□□□ -0.27
LSM4-206ENST00000600289 KNG1P01042 644 aa13.37□□□□□ -0.27
LSM4-206ENST00000600289 MMP9P14780 707 aa13.37□□□□□ -0.27
LSM4-206ENST00000600289 CFPP27918 469 aa13.37□□□□□ -0.27
LSM4-206ENST00000600289 GTF2A1P52655 376 aaPredicted RBP13.37□□□□□ -0.27
LSM4-206ENST00000600289 GMFBP60983 142 aa13.37□□□□□ -0.27
LSM4-206ENST00000600289 DGUOKQ16854 277 aa13.37□□□□□ -0.27
LSM4-206ENST00000600289 RNLSQ5VYX0 342 aa13.37□□□□□ -0.27
LSM4-206ENST00000600289 XAF1Q6GPH4 301 aa13.37□□□□□ -0.27
LSM4-206ENST00000600289 ANGPTL5Q86XS5 388 aa13.37□□□□□ -0.27
LSM4-206ENST00000600289 SERPINA12Q8IW75 414 aa13.37□□□□□ -0.27
LSM4-206ENST00000600289 Q8IYB0 196 aa13.37□□□□□ -0.27
LSM4-206ENST00000600289 KIR3DL3Q8N743 410 aa13.37□□□□□ -0.27
LSM4-206ENST00000600289 NPRL2Q8WTW4 380 aa13.37□□□□□ -0.27
LSM4-206ENST00000600289 ST8SIA4Q92187 359 aa13.37□□□□□ -0.27
LSM4-206ENST00000600289 RGP1Q92546 391 aaPredicted RBP13.37□□□□□ -0.27
LSM4-206ENST00000600289 SMIM19Q96E16 107 aa13.37□□□□□ -0.27
LSM4-206ENST00000600289 ZNF488Q96MN9 340 aa13.37□□□□□ -0.27
LSM4-206ENST00000600289 OPALINQ96PE5 141 aa13.37□□□□□ -0.27
LSM4-206ENST00000600289 DCTN5Q9BTE1 182 aa13.37□□□□□ -0.27
LSM4-206ENST00000600289 ZCCHC4Q9H5U6 513 aa13.37□□□□□ -0.27
LSM4-206ENST00000600289 SEBOXQ9HB31 216 aaPredicted RBP13.37□□□□□ -0.27
LSM4-206ENST00000600289 NEK6Q9HC98 313 aa13.37□□□□□ -0.27
LSM4-206ENST00000600289 CLEC2DQ9UHP7 191 aa13.37□□□□□ -0.27
LSM4-206ENST00000600289 NXPH2O95156 264 aa13.36□□□□□ -0.27
LSM4-206ENST00000600289 LALBAP00709 142 aa13.36□□□□□ -0.27
LSM4-206ENST00000600289 MYF6P23409 242 aa13.36□□□□□ -0.27
LSM4-206ENST00000600289 FPR2P25090 351 aa13.36□□□□□ -0.27
LSM4-206ENST00000600289 BPIFB3P59826 476 aa13.36□□□□□ -0.27
LSM4-206ENST00000600289 FGF12P61328 243 aa13.36□□□□□ -0.27
LSM4-206ENST00000600289 PDLIM3Q53GG5 364 aaPredicted RBP13.36□□□□□ -0.27
LSM4-206ENST00000600289 ZNF529Q6P280 563 aa13.36□□□□□ -0.27
LSM4-206ENST00000600289 FGFRL1Q8N441 504 aa13.36□□□□□ -0.27
LSM4-206ENST00000600289 ZNF561Q8N587 486 aa13.36□□□□□ -0.27
LSM4-206ENST00000600289 ZNF418Q8TF45 676 aaPredicted RBP13.36□□□□□ -0.27
LSM4-206ENST00000600289 CEP19Q96LK0 163 aa13.36□□□□□ -0.27
LSM4-206ENST00000600289 SUCNR1Q9BXA5 334 aa13.36□□□□□ -0.27
LSM4-206ENST00000600289 ANKRD60Q9BZ19 345 aa13.36□□□□□ -0.27
LSM4-206ENST00000600289 SIRPDQ9H106 197 aa13.36□□□□□ -0.27
LSM4-206ENST00000600289 MTCH1Q9NZJ7 389 aa13.36□□□□□ -0.27
LSM4-206ENST00000600289 SLC25A10Q9UBX3 287 aaPredicted RBP13.36□□□□□ -0.27
LSM4-206ENST00000600289 DHDHQ9UQ10 334 aa13.36□□□□□ -0.27
LSM4-206ENST00000600289 MAB21L2Q9Y586 359 aa13.36□□□□□ -0.27
LSM4-206ENST00000600289 KPTNQ9Y664 436 aa13.36□□□□□ -0.27
LSM4-206ENST00000600289 SLC1A7O00341 560 aa13.35□□□□□ -0.27
LSM4-206ENST00000600289 SULT1B1O43704 296 aa13.35□□□□□ -0.27
LSM4-206ENST00000600289 SELLP14151 372 aa13.35□□□□□ -0.27
LSM4-206ENST00000600289 GABRA2P47869 451 aa13.35□□□□□ -0.27
LSM4-206ENST00000600289 HSPA13P48723 471 aa13.35□□□□□ -0.27
LSM4-206ENST00000600289 MTCP1P56278 107 aa13.35□□□□□ -0.27
LSM4-206ENST00000600289 TAS2R43P59537 309 aa13.35□□□□□ -0.27
LSM4-206ENST00000600289 HILS1P60008 231 aa13.35□□□□□ -0.27
LSM4-206ENST00000600289 IKZF1Q13422 519 aa13.35□□□□□ -0.27
LSM4-206ENST00000600289 C6orf141Q5SZD1 244 aa13.35□□□□□ -0.27
LSM4-206ENST00000600289 METTL11BQ5VVY1 283 aa13.35□□□□□ -0.27
LSM4-206ENST00000600289 DMKNQ6E0U4 476 aaPredicted RBP13.35□□□□□ -0.27
LSM4-206ENST00000600289 SLC25A26Q70HW3 274 aa13.35□□□□□ -0.27
LSM4-206ENST00000600289 AHSA2Q719I0 299 aa13.35□□□□□ -0.27
LSM4-206ENST00000600289 MKXQ8IYA7 352 aa13.35□□□□□ -0.27
LSM4-206ENST00000600289 STX19Q8N4C7 294 aa13.35□□□□□ -0.27
LSM4-206ENST00000600289 BPIFB2Q8N4F0 458 aa13.35□□□□□ -0.27
LSM4-206ENST00000600289 CD177Q8N6Q3 437 aa13.35□□□□□ -0.27
LSM4-206ENST00000600289 BPIFB6Q8NFQ5 453 aa13.35□□□□□ -0.27
LSM4-206ENST00000600289 OR5D14Q8NGL3 314 aa13.35□□□□□ -0.27
LSM4-206ENST00000600289 OR13C9Q8NGT0 318 aa13.35□□□□□ -0.27
LSM4-206ENST00000600289 GPR148Q8TDV2 347 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms