RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 RAB39BQ96DA2 213 aa15.19■□□□□ 0.02
LIG1-216ENST00000598938 NR1H4Q96RI1 486 aaPredicted RBP15.19■□□□□ 0.02
LIG1-216ENST00000598938 NRIP2Q9BQI9 281 aa15.19■□□□□ 0.02
LIG1-216ENST00000598938 WDR13Q9H1Z4 485 aa15.19■□□□□ 0.02
LIG1-216ENST00000598938 TMEM138Q9NPI0 162 aa15.19■□□□□ 0.02
LIG1-216ENST00000598938 YAE1D1Q9NRH1 226 aa15.19■□□□□ 0.02
LIG1-216ENST00000598938 NDUFB11Q9NX14 153 aa15.19■□□□□ 0.02
LIG1-216ENST00000598938 CKLFQ9UBR5 152 aa15.19■□□□□ 0.02
LIG1-216ENST00000598938 FOXJ3Q9UPW0 622 aa15.19■□□□□ 0.02
LIG1-216ENST00000598938 IGHV3OR15-7A0A075B7D8 119 aa15.18■□□□□ 0.02
LIG1-216ENST00000598938 TRIM64CA6NLI5 447 aa15.18■□□□□ 0.02
LIG1-216ENST00000598938 A8MV72 311 aaPredicted RBP15.18■□□□□ 0.02
LIG1-216ENST00000598938 CCRL2O00421 344 aa15.18■□□□□ 0.02
LIG1-216ENST00000598938 MAGEB3O15480 346 aa15.18■□□□□ 0.02
LIG1-216ENST00000598938 PHF1O43189 567 aaPredicted RBP15.18■□□□□ 0.02
LIG1-216ENST00000598938 GLRA1P23415 457 aa15.18■□□□□ 0.02
LIG1-216ENST00000598938 CPT2P23786 658 aa15.18■□□□□ 0.02
LIG1-216ENST00000598938 BDKRB2P30411 391 aa15.18■□□□□ 0.02
LIG1-216ENST00000598938 GZMKP49863 264 aa15.18■□□□□ 0.02
LIG1-216ENST00000598938 GP2P55259 537 aaKnown RBP15.18■□□□□ 0.02
LIG1-216ENST00000598938 ERVK11-1P61568 191 aa15.18■□□□□ 0.02
LIG1-216ENST00000598938 PDZK1IP1Q13113 114 aa15.18■□□□□ 0.02
LIG1-216ENST00000598938 MICBQ29980 383 aa15.18■□□□□ 0.02
LIG1-216ENST00000598938 SYT6Q5T7P8 510 aaPredicted RBP15.18■□□□□ 0.02
LIG1-216ENST00000598938 SLC25A26Q70HW3 274 aa15.18■□□□□ 0.02
LIG1-216ENST00000598938 CEACAM19Q7Z692 300 aa15.18■□□□□ 0.02
LIG1-216ENST00000598938 OR52N4Q8NGI2 321 aa15.18■□□□□ 0.02
LIG1-216ENST00000598938 RFT1Q96AA3 541 aa15.18■□□□□ 0.02
LIG1-216ENST00000598938 C12orf43Q96C57 262 aaKnown RBP15.18■□□□□ 0.02
LIG1-216ENST00000598938 SEH1LQ96EE3 360 aa15.18■□□□□ 0.02
LIG1-216ENST00000598938 ZNF488Q96MN9 340 aa15.18■□□□□ 0.02
LIG1-216ENST00000598938 RASL12Q9NYN1 266 aa15.18■□□□□ 0.02
LIG1-216ENST00000598938 MTCH1Q9NZJ7 389 aa15.18■□□□□ 0.02
LIG1-216ENST00000598938 CDC42EP3Q9UKI2 254 aa15.18■□□□□ 0.02
LIG1-216ENST00000598938 FAM157AC9JC47 383 aa15.17■□□□□ 0.02
LIG1-216ENST00000598938 NDUFA2O43678 99 aa15.17■□□□□ 0.02
LIG1-216ENST00000598938 RGS9O75916 674 aaPredicted RBP15.17■□□□□ 0.02
LIG1-216ENST00000598938 PLATP00750 562 aa15.17■□□□□ 0.02
LIG1-216ENST00000598938 WNT2P09544 360 aa15.17■□□□□ 0.02
LIG1-216ENST00000598938 UCHL1P09936 223 aa15.17■□□□□ 0.02
LIG1-216ENST00000598938 POU3F4P49335 361 aa15.17■□□□□ 0.02
LIG1-216ENST00000598938 ZP1P60852 638 aa15.17■□□□□ 0.02
LIG1-216ENST00000598938 GMFBP60983 142 aa15.17■□□□□ 0.02
LIG1-216ENST00000598938 FABP5Q01469 135 aa15.17■□□□□ 0.02
LIG1-216ENST00000598938 NEDD8Q15843 81 aa15.17■□□□□ 0.02
LIG1-216ENST00000598938 FAM27D1Q5T7N8 215 aa15.17■□□□□ 0.02
LIG1-216ENST00000598938 STUMQ69YW2 141 aa15.17■□□□□ 0.02
LIG1-216ENST00000598938 LYPD2Q6UXB3 125 aa15.17■□□□□ 0.02
LIG1-216ENST00000598938 MKXQ8IYA7 352 aa15.17■□□□□ 0.02
LIG1-216ENST00000598938 MUL1Q969V5 352 aa15.17■□□□□ 0.02
LIG1-216ENST00000598938 SLAMF9Q96A28 289 aa15.17■□□□□ 0.02
LIG1-216ENST00000598938 CPNE2Q96FN4 548 aaPredicted RBP15.17■□□□□ 0.02
LIG1-216ENST00000598938 HES4Q9HCC6 221 aa15.17■□□□□ 0.02
LIG1-216ENST00000598938 MIOXQ9UGB7 285 aa15.17■□□□□ 0.02
LIG1-216ENST00000598938 PCDHB10Q9UN67 800 aa15.17■□□□□ 0.02
LIG1-216ENST00000598938 MAGEA13PA6NCF6 341 aa15.16■□□□□ 0.02
LIG1-216ENST00000598938 GYPAP02724 150 aa15.16■□□□□ 0.02
LIG1-216ENST00000598938 RPS2P15880 293 aaKnown RBP15.16■□□□□ 0.02
LIG1-216ENST00000598938 DDI2Q5TDH0 399 aa15.16■□□□□ 0.02
LIG1-216ENST00000598938 CD200R1LQ6Q8B3 271 aa15.16■□□□□ 0.02
LIG1-216ENST00000598938 ACP7Q6ZNF0 438 aa15.16■□□□□ 0.02
LIG1-216ENST00000598938 SAXO1Q8IYX7 474 aa15.16■□□□□ 0.02
LIG1-216ENST00000598938 PHYHIPQ92561 330 aa15.16■□□□□ 0.02
LIG1-216ENST00000598938 TMIGD2Q96BF3 282 aa15.16■□□□□ 0.02
LIG1-216ENST00000598938 MSI2Q96DH6 328 aaKnown RBP15.16■□□□□ 0.02
LIG1-216ENST00000598938 CEP19Q96LK0 163 aa15.16■□□□□ 0.02
LIG1-216ENST00000598938 PPIL3Q9H2H8 161 aaKnown RBP15.16■□□□□ 0.02
LIG1-216ENST00000598938 TMEM160Q9NX00 188 aa15.16■□□□□ 0.02
LIG1-216ENST00000598938 NLKQ9UBE8 527 aa15.16■□□□□ 0.02
LIG1-216ENST00000598938 DNAJB11Q9UBS4 358 aa15.16■□□□□ 0.02
LIG1-216ENST00000598938 YLPM1P49750 1951 aaKnown RBP15.15■□□□□ 0.02
LIG1-216ENST00000598938 IGKV1-12A0A0C4DH73 117 aa15.15■□□□□ 0.02
LIG1-216ENST00000598938 F8VVB4 439 aa15.15■□□□□ 0.02
LIG1-216ENST00000598938 F8VWA3 439 aa15.15■□□□□ 0.02
LIG1-216ENST00000598938 GABRPO00591 440 aa15.15■□□□□ 0.02
LIG1-216ENST00000598938 SPRY1O43609 319 aaPredicted RBP15.15■□□□□ 0.02
LIG1-216ENST00000598938 NXPH2O95156 264 aa15.15■□□□□ 0.02
LIG1-216ENST00000598938 CYB5AP00167 134 aa15.15■□□□□ 0.02
LIG1-216ENST00000598938 IGKV1D-12P01611 117 aa15.15■□□□□ 0.02
LIG1-216ENST00000598938 SMIM21Q3B7S5 101 aa15.15■□□□□ 0.02
LIG1-216ENST00000598938 HSD17B12Q53GQ0 312 aa15.15■□□□□ 0.02
LIG1-216ENST00000598938 ATPAF1Q5TC12 328 aaPredicted RBP15.15■□□□□ 0.02
LIG1-216ENST00000598938 CYB5R2Q6BCY4 276 aa15.15■□□□□ 0.02
LIG1-216ENST00000598938 SATL1Q86VE3 508 aa15.15■□□□□ 0.02
LIG1-216ENST00000598938 CDH26Q8IXH8 852 aa15.15■□□□□ 0.02
LIG1-216ENST00000598938 Q8IYB0 196 aa15.15■□□□□ 0.02
LIG1-216ENST00000598938 LINC01356Q8N9X3 169 aa15.15■□□□□ 0.02
LIG1-216ENST00000598938 ZSCAN4Q8NAM6 433 aaPredicted RBP15.15■□□□□ 0.02
LIG1-216ENST00000598938 OR5D18Q8NGL1 313 aa15.15■□□□□ 0.02
LIG1-216ENST00000598938 OR51F2Q8NH61 342 aa15.15■□□□□ 0.02
LIG1-216ENST00000598938 ANGPTL6Q8NI99 470 aa15.15■□□□□ 0.02
LIG1-216ENST00000598938 NEIL1Q96FI4 390 aaPredicted RBP15.15■□□□□ 0.02
LIG1-216ENST00000598938 DNTTIP1Q9H147 329 aa15.15■□□□□ 0.02
LIG1-216ENST00000598938 SNTG1Q9NSN8 517 aa15.15■□□□□ 0.02
LIG1-216ENST00000598938 KAAG1Q9UBP8 84 aa15.15■□□□□ 0.02
LIG1-216ENST00000598938 OR2AT4A6NND4 320 aa15.14■□□□□ 0.01
LIG1-216ENST00000598938 B4DSR2 109 aa15.14■□□□□ 0.01
LIG1-216ENST00000598938 TRAPPC2LH3BP13 241 aa15.14■□□□□ 0.01
LIG1-216ENST00000598938 ADAM20O43506 726 aa15.14■□□□□ 0.01
LIG1-216ENST00000598938 ANGPTL7O43827 346 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms