RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 CLDN25C9JDP6 229 aa12.4□□□□□ -0.42
VRK3-212ENST00000596814 TPD52L2O43399 206 aaKnown RBP12.4□□□□□ -0.42
VRK3-212ENST00000596814 INHBBP09529 407 aa12.4□□□□□ -0.42
VRK3-212ENST00000596814 GTF2F2P13984 249 aa12.4□□□□□ -0.42
VRK3-212ENST00000596814 GATA4P43694 442 aa12.4□□□□□ -0.42
VRK3-212ENST00000596814 NPBWR2P48146 333 aa12.4□□□□□ -0.42
VRK3-212ENST00000596814 PPOXP50336 477 aa12.4□□□□□ -0.42
VRK3-212ENST00000596814 FAM189A2Q15884 450 aa12.4□□□□□ -0.42
VRK3-212ENST00000596814 PCGF3Q3KNV8 242 aa12.4□□□□□ -0.42
VRK3-212ENST00000596814 SPRNQ5BIV9 151 aa12.4□□□□□ -0.42
VRK3-212ENST00000596814 SP5Q6BEB4 398 aaPredicted RBP12.4□□□□□ -0.42
VRK3-212ENST00000596814 ZNF826PQ6ZT77 177 aa12.4□□□□□ -0.42
VRK3-212ENST00000596814 DTX2Q86UW9 622 aa12.4□□□□□ -0.42
VRK3-212ENST00000596814 C11orf53Q8IXP5 236 aa12.4□□□□□ -0.42
VRK3-212ENST00000596814 ZCCHC24Q8N2G6 241 aaKnown RBP12.4□□□□□ -0.42
VRK3-212ENST00000596814 MFSD4AQ8N468 514 aa12.4□□□□□ -0.42
VRK3-212ENST00000596814 URM1Q9BTM9 101 aaKnown RBP12.4□□□□□ -0.42
VRK3-212ENST00000596814 WDR12Q9GZL7 423 aaKnown RBP12.4□□□□□ -0.42
VRK3-212ENST00000596814 FN3KRPQ9HA64 309 aa12.4□□□□□ -0.42
VRK3-212ENST00000596814 METTL21EPA6NDL7 271 aa12.4□□□□□ -0.43
VRK3-212ENST00000596814 SOD3P08294 240 aa12.4□□□□□ -0.43
VRK3-212ENST00000596814 DANCRP0C864 163 aa12.4□□□□□ -0.43
VRK3-212ENST00000596814 PGA5P0DJD9 388 aa12.4□□□□□ -0.43
VRK3-212ENST00000596814 TNFRSF1AP19438 455 aa12.4□□□□□ -0.43
VRK3-212ENST00000596814 RPS27AP62979 156 aaKnown RBP12.4□□□□□ -0.43
VRK3-212ENST00000596814 CCL8P80075 99 aa12.4□□□□□ -0.43
VRK3-212ENST00000596814 TLE4Q04727 773 aa12.4□□□□□ -0.43
VRK3-212ENST00000596814 MADCAM1Q13477 382 aa12.4□□□□□ -0.43
VRK3-212ENST00000596814 ELP2Q6IA86 826 aa12.4□□□□□ -0.43
VRK3-212ENST00000596814 C11orf71Q6IPW1 123 aa12.4□□□□□ -0.43
VRK3-212ENST00000596814 FAM131AQ6UXB0 335 aa12.4□□□□□ -0.43
VRK3-212ENST00000596814 WDR82Q6UXN9 313 aa12.4□□□□□ -0.43
VRK3-212ENST00000596814 BIVMQ86UB2 503 aa12.4□□□□□ -0.43
VRK3-212ENST00000596814 MOGAT3Q86VF5 341 aa12.4□□□□□ -0.43
VRK3-212ENST00000596814 Q8IYB0 196 aa12.4□□□□□ -0.43
VRK3-212ENST00000596814 OSR2Q8N2R0 312 aa12.4□□□□□ -0.43
VRK3-212ENST00000596814 PHF21AQ96BD5 680 aa12.4□□□□□ -0.43
VRK3-212ENST00000596814 MRPS24Q96EL2 167 aaKnown RBP12.4□□□□□ -0.43
VRK3-212ENST00000596814 ZNF488Q96MN9 340 aa12.4□□□□□ -0.43
VRK3-212ENST00000596814 SELENOIQ9C0D9 397 aa12.4□□□□□ -0.43
VRK3-212ENST00000596814 EGLN1Q9GZT9 426 aa12.4□□□□□ -0.43
VRK3-212ENST00000596814 LPAR5Q9H1C0 372 aa12.4□□□□□ -0.43
VRK3-212ENST00000596814 SAP30LQ9HAJ7 183 aa12.4□□□□□ -0.43
VRK3-212ENST00000596814 RHOFQ9HBH0 211 aa12.4□□□□□ -0.43
VRK3-212ENST00000596814 DECR2Q9NUI1 292 aa12.4□□□□□ -0.43
VRK3-212ENST00000596814 RBFOX1Q9NWB1 397 aaKnown RBP12.4□□□□□ -0.43
VRK3-212ENST00000596814 C1orf123Q9NWV4 160 aa12.4□□□□□ -0.43
VRK3-212ENST00000596814 V9GYH0 126 aa12.4□□□□□ -0.43
VRK3-212ENST00000596814 FABP12A6NFH5 140 aa12.39□□□□□ -0.43
VRK3-212ENST00000596814 CDK2P24941 298 aa12.39□□□□□ -0.43
VRK3-212ENST00000596814 FGF12P61328 243 aa12.39□□□□□ -0.43
VRK3-212ENST00000596814 ZNF45Q02386 682 aa12.39□□□□□ -0.43
VRK3-212ENST00000596814 IL18Q14116 193 aa12.39□□□□□ -0.43
VRK3-212ENST00000596814 ZNF846Q147U1 533 aa12.39□□□□□ -0.43
VRK3-212ENST00000596814 TMEM69Q5SWH9 247 aa12.39□□□□□ -0.43
VRK3-212ENST00000596814 METAP1DQ6UB28 335 aaPredicted RBP12.39□□□□□ -0.43
VRK3-212ENST00000596814 DTX3Q8N9I9 347 aa12.39□□□□□ -0.43
VRK3-212ENST00000596814 POC1AQ8NBT0 407 aa12.39□□□□□ -0.43
VRK3-212ENST00000596814 Q8NFD4 153 aa12.39□□□□□ -0.43
VRK3-212ENST00000596814 OR51T1Q8NGJ9 327 aa12.39□□□□□ -0.43
VRK3-212ENST00000596814 EMG1Q92979 244 aaKnown RBP12.39□□□□□ -0.43
VRK3-212ENST00000596814 ERGIC1Q969X5 290 aa12.39□□□□□ -0.43
VRK3-212ENST00000596814 Q96M66 194 aa12.39□□□□□ -0.43
VRK3-212ENST00000596814 NRIP2Q9BQI9 281 aa12.39□□□□□ -0.43
VRK3-212ENST00000596814 NICN1Q9BSH3 213 aa12.39□□□□□ -0.43
VRK3-212ENST00000596814 TRAF4Q9BUZ4 470 aaPredicted RBP12.39□□□□□ -0.43
VRK3-212ENST00000596814 TM2D1Q9BX74 207 aa12.39□□□□□ -0.43
VRK3-212ENST00000596814 CLEC4MQ9H2X3 399 aaPredicted RBP12.39□□□□□ -0.43
VRK3-212ENST00000596814 DIABLOQ9NR28 239 aa12.39□□□□□ -0.43
VRK3-212ENST00000596814 TENM4Q6N022 2769 aa12.38□□□□□ -0.43
VRK3-212ENST00000596814 A0A0A6YYH2 397 aa12.38□□□□□ -0.43
VRK3-212ENST00000596814 A6NJ64 397 aa12.38□□□□□ -0.43
VRK3-212ENST00000596814 F8VVB4 439 aa12.38□□□□□ -0.43
VRK3-212ENST00000596814 F8VWA3 439 aa12.38□□□□□ -0.43
VRK3-212ENST00000596814 AKR7A2O43488 359 aa12.38□□□□□ -0.43
VRK3-212ENST00000596814 SCGNO76038 276 aa12.38□□□□□ -0.43
VRK3-212ENST00000596814 CD8AP01732 235 aa12.38□□□□□ -0.43
VRK3-212ENST00000596814 ACAA1P09110 424 aaPredicted RBP12.38□□□□□ -0.43
VRK3-212ENST00000596814 PRKACAP17612 351 aa12.38□□□□□ -0.43
VRK3-212ENST00000596814 CPT2P23786 658 aa12.38□□□□□ -0.43
VRK3-212ENST00000596814 VEGFCP49767 419 aa12.38□□□□□ -0.43
VRK3-212ENST00000596814 RAB12Q6IQ22 244 aa12.38□□□□□ -0.43
VRK3-212ENST00000596814 BAIAP2L2Q6UXY1 529 aa12.38□□□□□ -0.43
VRK3-212ENST00000596814 IZUMO1Q8IYV9 350 aa12.38□□□□□ -0.43
VRK3-212ENST00000596814 LRRC29Q8WV35 223 aa12.38□□□□□ -0.43
VRK3-212ENST00000596814 VRK1Q99986 396 aaPredicted RBP12.38□□□□□ -0.43
VRK3-212ENST00000596814 GCM1Q9NP62 436 aa12.38□□□□□ -0.43
VRK3-212ENST00000596814 HELZ2Q9BYK8 2649 aaKnown RBP12.37□□□□□ -0.43
VRK3-212ENST00000596814 A0A0A6YYD4 124 aa12.37□□□□□ -0.43
VRK3-212ENST00000596814 XRCC3O43542 346 aa12.37□□□□□ -0.43
VRK3-212ENST00000596814 NOS1APO75052 506 aaPredicted RBP12.37□□□□□ -0.43
VRK3-212ENST00000596814 NXPH2O95156 264 aa12.37□□□□□ -0.43
VRK3-212ENST00000596814 CHRM2P08172 466 aa12.37□□□□□ -0.43
VRK3-212ENST00000596814 NR4A2P43354 598 aa12.37□□□□□ -0.43
VRK3-212ENST00000596814 PITPNBP48739 271 aa12.37□□□□□ -0.43
VRK3-212ENST00000596814 RBM11P57052 281 aaKnown RBP12.37□□□□□ -0.43
VRK3-212ENST00000596814 ERVK11-1P61568 191 aa12.37□□□□□ -0.43
VRK3-212ENST00000596814 PIGYQ3MUY2 71 aa12.37□□□□□ -0.43
VRK3-212ENST00000596814 FAM58AQ8N1B3 248 aa12.37□□□□□ -0.43
VRK3-212ENST00000596814 OR56B1Q8NGI3 324 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms