RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 OR4C45A6NMZ5 311 aa12.43□□□□□ -0.42
TRIM28-205ENST00000595028 J3QLW9 94 aa12.43□□□□□ -0.42
TRIM28-205ENST00000595028 WBP4O75554 376 aaKnown RBP12.43□□□□□ -0.42
TRIM28-205ENST00000595028 NXPH2O95156 264 aa12.43□□□□□ -0.42
TRIM28-205ENST00000595028 SERPINA3P01011 423 aa12.43□□□□□ -0.42
TRIM28-205ENST00000595028 IGHV1-69P01742 117 aa12.43□□□□□ -0.42
TRIM28-205ENST00000595028 RNASE1P07998 156 aaKnown RBP12.43□□□□□ -0.42
TRIM28-205ENST00000595028 ZNF19P17023 458 aa12.43□□□□□ -0.42
TRIM28-205ENST00000595028 COMPP49747 757 aaPredicted RBP12.43□□□□□ -0.42
TRIM28-205ENST00000595028 FUT6P51993 359 aa12.43□□□□□ -0.42
TRIM28-205ENST00000595028 ERVK11-1P61568 191 aa12.43□□□□□ -0.42
TRIM28-205ENST00000595028 IL24Q13007 206 aa12.43□□□□□ -0.42
TRIM28-205ENST00000595028 SLC9A3R2Q15599 337 aa12.43□□□□□ -0.42
TRIM28-205ENST00000595028 DEFB112Q30KQ8 113 aa12.43□□□□□ -0.42
TRIM28-205ENST00000595028 LHFPL3Q86UP9 236 aa12.43□□□□□ -0.42
TRIM28-205ENST00000595028 ANGPTL5Q86XS5 388 aa12.43□□□□□ -0.42
TRIM28-205ENST00000595028 BATF2Q8N1L9 274 aa12.43□□□□□ -0.42
TRIM28-205ENST00000595028 CD177Q8N6Q3 437 aa12.43□□□□□ -0.42
TRIM28-205ENST00000595028 PACRGLQ8N7B6 248 aa12.43□□□□□ -0.42
TRIM28-205ENST00000595028 ZNRF1Q8ND25 227 aa12.43□□□□□ -0.42
TRIM28-205ENST00000595028 OR52I1Q8NGK6 324 aa12.43□□□□□ -0.42
TRIM28-205ENST00000595028 GCDHQ92947 438 aaPredicted RBP12.43□□□□□ -0.42
TRIM28-205ENST00000595028 LHX4Q969G2 390 aa12.43□□□□□ -0.42
TRIM28-205ENST00000595028 BORCS8Q96FH0 119 aa12.43□□□□□ -0.42
TRIM28-205ENST00000595028 ZNF649Q9BS31 505 aa12.43□□□□□ -0.42
TRIM28-205ENST00000595028 PRDM13Q9H4Q3 707 aa12.43□□□□□ -0.42
TRIM28-205ENST00000595028 ELL3Q9HB65 397 aaPredicted RBP12.43□□□□□ -0.42
TRIM28-205ENST00000595028 MRPS18AQ9NVS2 196 aaKnown RBP12.43□□□□□ -0.42
TRIM28-205ENST00000595028 ERVK13-1Q9NX77 482 aa12.43□□□□□ -0.42
TRIM28-205ENST00000595028 HHLA2Q9UM44 414 aa12.43□□□□□ -0.42
TRIM28-205ENST00000595028 RFPL4AA6NLU0 287 aa12.42□□□□□ -0.42
TRIM28-205ENST00000595028 RFPL4AL1F8VTS6 287 aa12.42□□□□□ -0.42
TRIM28-205ENST00000595028 ZNF20P17024 532 aa12.42□□□□□ -0.42
TRIM28-205ENST00000595028 ALKBH1Q13686 389 aaKnown RBP12.42□□□□□ -0.42
TRIM28-205ENST00000595028 SMN1Q16637 294 aaKnown RBP12.42□□□□□ -0.42
TRIM28-205ENST00000595028 LRRC36Q1X8D7 754 aa12.42□□□□□ -0.42
TRIM28-205ENST00000595028 ZNF691Q5VV52 312 aa12.42□□□□□ -0.42
TRIM28-205ENST00000595028 LPCAT4Q643R3 524 aa12.42□□□□□ -0.42
TRIM28-205ENST00000595028 UTS2BQ765I0 119 aa12.42□□□□□ -0.42
TRIM28-205ENST00000595028 EGFL6Q8IUX8 553 aa12.42□□□□□ -0.42
TRIM28-205ENST00000595028 ZNF561Q8N587 486 aa12.42□□□□□ -0.42
TRIM28-205ENST00000595028 OR10AC1Q8NH08 325 aa12.42□□□□□ -0.42
TRIM28-205ENST00000595028 JAM3Q9BX67 310 aa12.42□□□□□ -0.42
TRIM28-205ENST00000595028 ISG20L2Q9H9L3 353 aaKnown RBP12.42□□□□□ -0.42
TRIM28-205ENST00000595028 SIRT7Q9NRC8 400 aa12.42□□□□□ -0.42
TRIM28-205ENST00000595028 IGKV1-9A0A0C4DH69 117 aa12.41□□□□□ -0.42
TRIM28-205ENST00000595028 A0A1W2PQ09 198 aa12.41□□□□□ -0.42
TRIM28-205ENST00000595028 SLC1A7O00341 560 aa12.41□□□□□ -0.42
TRIM28-205ENST00000595028 CLIC3O95833 236 aa12.41□□□□□ -0.42
TRIM28-205ENST00000595028 KNG1P01042 644 aa12.41□□□□□ -0.42
TRIM28-205ENST00000595028 PRDX2P32119 198 aa12.41□□□□□ -0.42
TRIM28-205ENST00000595028 CEBPDP49716 269 aaPredicted RBP12.41□□□□□ -0.42
TRIM28-205ENST00000595028 CAPZA1P52907 286 aa12.41□□□□□ -0.42
TRIM28-205ENST00000595028 MRPL28Q13084 256 aaKnown RBP12.41□□□□□ -0.42
TRIM28-205ENST00000595028 KLHL22Q53GT1 634 aa12.41□□□□□ -0.42
TRIM28-205ENST00000595028 METAP1DQ6UB28 335 aaPredicted RBP12.41□□□□□ -0.42
TRIM28-205ENST00000595028 Q8N7P7 452 aa12.41□□□□□ -0.42
TRIM28-205ENST00000595028 ZNF676Q8N7Q3 588 aa12.41□□□□□ -0.42
TRIM28-205ENST00000595028 DNAAF1Q8NEP3 725 aa12.41□□□□□ -0.42
TRIM28-205ENST00000595028 OR51A4Q8NGJ6 313 aa12.41□□□□□ -0.42
TRIM28-205ENST00000595028 CYGBQ8WWM9 190 aa12.41□□□□□ -0.42
TRIM28-205ENST00000595028 ZDHHC16Q969W1 377 aa12.41□□□□□ -0.42
TRIM28-205ENST00000595028 SLC25A28Q96A46 364 aa12.41□□□□□ -0.42
TRIM28-205ENST00000595028 CEP19Q96LK0 163 aa12.41□□□□□ -0.42
TRIM28-205ENST00000595028 NOX4Q9NPH5 578 aa12.41□□□□□ -0.42
TRIM28-205ENST00000595028 MTCH1Q9NZJ7 389 aa12.41□□□□□ -0.42
TRIM28-205ENST00000595028 OR14J1Q9UGF5 321 aa12.41□□□□□ -0.42
TRIM28-205ENST00000595028 DSCAML1Q8TD84 2053 aa12.41□□□□□ -0.42
TRIM28-205ENST00000595028 F8VVB4 439 aa12.4□□□□□ -0.42
TRIM28-205ENST00000595028 F8VWA3 439 aa12.4□□□□□ -0.42
TRIM28-205ENST00000595028 M0R1W7 72 aa12.4□□□□□ -0.42
TRIM28-205ENST00000595028 HOXA3O43365 443 aaPredicted RBP12.4□□□□□ -0.42
TRIM28-205ENST00000595028 LIMS3P0CW19 117 aa12.4□□□□□ -0.42
TRIM28-205ENST00000595028 LIMS4P0CW20 117 aa12.4□□□□□ -0.42
TRIM28-205ENST00000595028 HKR1P10072 659 aa12.4□□□□□ -0.42
TRIM28-205ENST00000595028 ATF1P18846 271 aa12.4□□□□□ -0.42
TRIM28-205ENST00000595028 PRKACBP22694 351 aa12.4□□□□□ -0.42
TRIM28-205ENST00000595028 AZGP1P25311 298 aaKnown RBP12.4□□□□□ -0.42
TRIM28-205ENST00000595028 RBP2P50120 134 aa12.4□□□□□ -0.42
TRIM28-205ENST00000595028 TTC23Q5W5X9 447 aa12.4□□□□□ -0.42
TRIM28-205ENST00000595028 SLC25A26Q70HW3 274 aa12.4□□□□□ -0.42
TRIM28-205ENST00000595028 PDZD9Q8IXQ8 264 aa12.4□□□□□ -0.42
TRIM28-205ENST00000595028 FAM185AQ8N0U4 392 aa12.4□□□□□ -0.42
TRIM28-205ENST00000595028 OR13C3Q8NGS6 347 aa12.4□□□□□ -0.42
TRIM28-205ENST00000595028 CNIH3Q8TBE1 160 aa12.4□□□□□ -0.42
TRIM28-205ENST00000595028 HAVCR2Q8TDQ0 301 aa12.4□□□□□ -0.42
TRIM28-205ENST00000595028 SLAMF9Q96A28 289 aa12.4□□□□□ -0.42
TRIM28-205ENST00000595028 SPSB1Q96BD6 273 aa12.4□□□□□ -0.42
TRIM28-205ENST00000595028 FGGYQ96C11 551 aa12.4□□□□□ -0.42
TRIM28-205ENST00000595028 OPALINQ96PE5 141 aa12.4□□□□□ -0.42
TRIM28-205ENST00000595028 FGF20Q9NP95 211 aaPredicted RBP12.4□□□□□ -0.42
TRIM28-205ENST00000595028 C19orf12Q9NSK7 152 aa12.4□□□□□ -0.42
TRIM28-205ENST00000595028 NOTCH1P46531 2555 aa12.4□□□□□ -0.42
TRIM28-205ENST00000595028 A0A0G2JK05 382 aa12.39□□□□□ -0.43
TRIM28-205ENST00000595028 A0A0U1RQK1 487 aa12.39□□□□□ -0.43
TRIM28-205ENST00000595028 TMEM212A6NML5 194 aa12.39□□□□□ -0.43
TRIM28-205ENST00000595028 E9PI62 339 aa12.39□□□□□ -0.43
TRIM28-205ENST00000595028 RNASEK-C17orf49H0YIS7 233 aa12.39□□□□□ -0.43
TRIM28-205ENST00000595028 ZFPL1O95159 310 aa12.39□□□□□ -0.43
TRIM28-205ENST00000595028 MELTFP08582 738 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms