RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 ZNF181Q2M3W8 571 aa2.26□□□□□ -2.05
SS18-214ENST00000580003 LINC00303Q3SY05 128 aa2.26□□□□□ -2.05
SS18-214ENST00000580003 AMN1Q8IY45 258 aa2.26□□□□□ -2.05
SS18-214ENST00000580003 KATNAL2Q8IYT4 538 aa2.26□□□□□ -2.05
SS18-214ENST00000580003 C3orf22Q8N5N4 141 aa2.26□□□□□ -2.05
SS18-214ENST00000580003 OR8A1Q8NGG7 326 aa2.26□□□□□ -2.05
SS18-214ENST00000580003 C20orf166-AS1Q96NR2 134 aa2.26□□□□□ -2.05
SS18-214ENST00000580003 GABRG3Q99928 467 aa2.26□□□□□ -2.05
SS18-214ENST00000580003 MTG1Q9BT17 334 aaPredicted RBP2.26□□□□□ -2.05
SS18-214ENST00000580003 TAC3Q9UHF0 121 aa2.26□□□□□ -2.05
SS18-214ENST00000580003 COL5A3P25940 1745 aaPredicted RBP2.25□□□□□ -2.05
SS18-214ENST00000580003 IGHV2OR16-5A0A0B4J2B6 119 aa2.25□□□□□ -2.05
SS18-214ENST00000580003 A0A1W2PNM2 257 aa2.25□□□□□ -2.05
SS18-214ENST00000580003 LEUTXA8MZ59 168 aa2.25□□□□□ -2.05
SS18-214ENST00000580003 K7ERS5 55 aa2.25□□□□□ -2.05
SS18-214ENST00000580003 DFFAO00273 331 aa2.25□□□□□ -2.05
SS18-214ENST00000580003 OR2A4O95047 310 aa2.25□□□□□ -2.05
SS18-214ENST00000580003 GCGP01275 180 aa2.25□□□□□ -2.05
SS18-214ENST00000580003 TRGV3P03979 118 aa2.25□□□□□ -2.05
SS18-214ENST00000580003 PAX6P26367 422 aa2.25□□□□□ -2.05
SS18-214ENST00000580003 KRTAP12-1P59990 96 aa2.25□□□□□ -2.05
SS18-214ENST00000580003 CMTM8Q8IZV2 173 aa2.25□□□□□ -2.05
SS18-214ENST00000580003 ZNF555Q8NEP9 628 aa2.25□□□□□ -2.05
SS18-214ENST00000580003 BPIFB6Q8NFQ5 453 aa2.25□□□□□ -2.05
SS18-214ENST00000580003 OR8S1Q8NH09 359 aa2.25□□□□□ -2.05
SS18-214ENST00000580003 BAALCQ8WXS3 180 aa2.25□□□□□ -2.05
SS18-214ENST00000580003 OR2A7Q96R45 310 aa2.25□□□□□ -2.05
SS18-214ENST00000580003 RBM22Q9NW64 420 aaKnown RBP eCLIP2.25□□□□□ -2.05
SS18-214ENST00000580003 PRO0628Q9UI54 55 aa2.25□□□□□ -2.05
SS18-214ENST00000580003 ORC6Q9Y5N6 252 aa2.25□□□□□ -2.05
SS18-214ENST00000580003 A0A0B4J2C4 111 aa2.24□□□□□ -2.05
SS18-214ENST00000580003 IGKV1-16P04430 117 aa2.24□□□□□ -2.05
SS18-214ENST00000580003 MLNP12872 115 aa2.24□□□□□ -2.05
SS18-214ENST00000580003 CSRP1P21291 193 aaKnown RBP2.24□□□□□ -2.05
SS18-214ENST00000580003 TTC32Q5I0X7 151 aa2.24□□□□□ -2.05
SS18-214ENST00000580003 MLIPQ5VWP3 458 aa2.24□□□□□ -2.05
SS18-214ENST00000580003 TRIB3Q96RU7 358 aa2.24□□□□□ -2.05
SS18-214ENST00000580003 C6orf50Q9HD87 102 aa2.24□□□□□ -2.05
SS18-214ENST00000580003 NSD2O96028 1365 aa2.23□□□□□ -2.05
SS18-214ENST00000580003 DYSFO75923 2080 aa2.23□□□□□ -2.05
SS18-214ENST00000580003 SERTM2A0A1B0GWG4 89 aa2.23□□□□□ -2.05
SS18-214ENST00000580003 ZNF729A6NN14 1252 aaPredicted RBP2.23□□□□□ -2.05
SS18-214ENST00000580003 GALP22466 123 aa2.23□□□□□ -2.05
SS18-214ENST00000580003 SLC18A1P54219 525 aa2.23□□□□□ -2.05
SS18-214ENST00000580003 CDNFQ49AH0 187 aa2.23□□□□□ -2.05
SS18-214ENST00000580003 CLEC18BQ6UXF7 455 aa2.23□□□□□ -2.05
SS18-214ENST00000580003 Q6ZS52 159 aa2.23□□□□□ -2.05
SS18-214ENST00000580003 VTCN1Q7Z7D3 282 aa2.23□□□□□ -2.05
SS18-214ENST00000580003 NAT6Q93015 286 aa2.23□□□□□ -2.05
SS18-214ENST00000580003 SRRQ9GZT4 340 aa2.23□□□□□ -2.05
SS18-214ENST00000580003 KLF12Q9Y4X4 402 aa2.23□□□□□ -2.05
SS18-214ENST00000580003 LTBP2Q14767 1821 aa2.22□□□□□ -2.05
SS18-214ENST00000580003 SUPT3HB4E1H0 165 aa2.22□□□□□ -2.05
SS18-214ENST00000580003 ST3GAL4Q11206 333 aa2.22□□□□□ -2.05
SS18-214ENST00000580003 CLEC19AQ6UXS0 136 aa2.22□□□□□ -2.05
SS18-214ENST00000580003 PRNTQ86SH4 94 aa2.22□□□□□ -2.05
SS18-214ENST00000580003 ZFAND1Q8TCF1 268 aa2.22□□□□□ -2.05
SS18-214ENST00000580003 SMIM8Q96KF7 97 aa2.22□□□□□ -2.05
SS18-214ENST00000580003 SPACA5Q96QH8 159 aa2.22□□□□□ -2.05
SS18-214ENST00000580003 IQCGQ9H095 443 aaKnown RBP2.22□□□□□ -2.05
SS18-214ENST00000580003 RHOFQ9HBH0 211 aa2.22□□□□□ -2.05
SS18-214ENST00000580003 TMEM106BQ9NUM4 274 aa2.22□□□□□ -2.05
SS18-214ENST00000580003 ZNF443Q9Y2A4 671 aaPredicted RBP2.22□□□□□ -2.05
SS18-214ENST00000580003 KLF13Q9Y2Y9 288 aaPredicted RBP2.22□□□□□ -2.05
SS18-214ENST00000580003 ZNF701M0R085 212 aaPredicted RBP2.21□□□□□ -2.06
SS18-214ENST00000580003 UPK1AO00322 258 aa2.21□□□□□ -2.06
SS18-214ENST00000580003 SETD1AO15047 1707 aaKnown RBP2.21□□□□□ -2.06
SS18-214ENST00000580003 PMCHP20382 165 aa2.21□□□□□ -2.06
SS18-214ENST00000580003 GABRR2P28476 465 aa2.21□□□□□ -2.06
SS18-214ENST00000580003 HTR2BP41595 481 aa2.21□□□□□ -2.06
SS18-214ENST00000580003 CYP4Z2PQ8N1L4 340 aa2.21□□□□□ -2.06
SS18-214ENST00000580003 OR4K2Q8NGD2 314 aa2.21□□□□□ -2.06
SS18-214ENST00000580003 PIH1D2Q8WWB5 315 aa2.21□□□□□ -2.06
SS18-214ENST00000580003 TMED9Q9BVK6 235 aa2.21□□□□□ -2.06
SS18-214ENST00000580003 TXNIPQ9H3M7 391 aa2.21□□□□□ -2.06
SS18-214ENST00000580003 ARMC7Q9H6L4 198 aa2.21□□□□□ -2.06
SS18-214ENST00000580003 PRSS16Q9NQE7 514 aa2.21□□□□□ -2.06
SS18-214ENST00000580003 COL11A1P12107 1806 aaPredicted RBP2.21□□□□□ -2.06
SS18-214ENST00000580003 BRD4O60885 1362 aaPredicted RBP2.21□□□□□ -2.06
SS18-214ENST00000580003 IGHV3-21A0A0B4J1V1 117 aa2.2□□□□□ -2.06
SS18-214ENST00000580003 PSIP1O75475 530 aaKnown RBP2.2□□□□□ -2.06
SS18-214ENST00000580003 ANXA8P13928 327 aa2.2□□□□□ -2.06
SS18-214ENST00000580003 TTMPQ5BVD1 217 aa2.2□□□□□ -2.06
SS18-214ENST00000580003 ANXA8L1Q5VT79 327 aa2.2□□□□□ -2.06
SS18-214ENST00000580003 LYPD6Q86Y78 171 aa2.2□□□□□ -2.06
SS18-214ENST00000580003 GLYATL2Q8WU03 294 aa2.2□□□□□ -2.06
SS18-214ENST00000580003 APOBEC3DQ96AK3 386 aaPredicted RBP2.2□□□□□ -2.06
SS18-214ENST00000580003 ZNF337Q9Y3M9 751 aa2.2□□□□□ -2.06
SS18-214ENST00000580003 INSIG2Q9Y5U4 225 aa2.2□□□□□ -2.06
SS18-214ENST00000580003 SBNO1A3KN83 1393 aa2.2□□□□□ -2.06
SS18-214ENST00000580003 BAHCC1Q9P281 2608 aa2.19□□□□□ -2.06
SS18-214ENST00000580003 K7EPK0 472 aa2.19□□□□□ -2.06
SS18-214ENST00000580003 HCCSP53701 268 aa2.19□□□□□ -2.06
SS18-214ENST00000580003 DHRS2Q13268 280 aa2.19□□□□□ -2.06
SS18-214ENST00000580003 PLCXD3Q63HM9 321 aa2.19□□□□□ -2.06
SS18-214ENST00000580003 ULK3Q6PHR2 472 aa2.19□□□□□ -2.06
SS18-214ENST00000580003 OR8D1Q8WZ84 308 aa2.19□□□□□ -2.06
SS18-214ENST00000580003 TSGA10Q9BZW7 698 aa2.19□□□□□ -2.06
SS18-214ENST00000580003 NAGKQ9UJ70 344 aa2.19□□□□□ -2.06
SS18-214ENST00000580003 CFL2Q9Y281 166 aa2.19□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms