RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 C4orf32Q8N8J7 132 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 OR5AR1Q8NGP9 310 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 CDC26Q8NHZ8 85 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 UBA3Q8TBC4 463 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 OR51E1Q8TCB6 317 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 VN1R17PQ8TDU5 208 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 F2RL3Q96RI0 385 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 CIB1Q99828 191 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 ISYNA1Q9NPH2 558 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 IL20Q9NYY1 176 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 SLC25A37Q9NYZ2 338 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 CYB5R1Q9UHQ9 305 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 NAGKQ9UJ70 344 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 CLEC4EQ9ULY5 219 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 ZNF835Q9Y2P0 537 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 IGHV3OR16-13A0A075B7E8 117 aa4.43□□□□□ -1.7
VPS53-219ENST00000576019 TRAV9-2A0A087WT02 112 aa4.43□□□□□ -1.7
VPS53-219ENST00000576019 A0A0A6YYH2 397 aa4.43□□□□□ -1.7
VPS53-219ENST00000576019 A6NJ64 397 aa4.43□□□□□ -1.7
VPS53-219ENST00000576019 ZNF726A6NNF4 738 aa4.43□□□□□ -1.7
VPS53-219ENST00000576019 NCBP2LA6PVI3 153 aaKnown RBP4.43□□□□□ -1.7
VPS53-219ENST00000576019 C12orf77C9JDV5 145 aa4.43□□□□□ -1.7
VPS53-219ENST00000576019 SULT1C2O00338 296 aa4.43□□□□□ -1.7
VPS53-219ENST00000576019 TOX3O15405 576 aaPredicted RBP4.43□□□□□ -1.7
VPS53-219ENST00000576019 ERI3O43414 337 aaKnown RBP4.43□□□□□ -1.7
VPS53-219ENST00000576019 SGCEO43556 437 aa4.43□□□□□ -1.7
VPS53-219ENST00000576019 ATP5HO75947 161 aa4.43□□□□□ -1.7
VPS53-219ENST00000576019 AQP8O94778 261 aa4.43□□□□□ -1.7
VPS53-219ENST00000576019 SHC1P29353 583 aa4.43□□□□□ -1.7
VPS53-219ENST00000576019 VDAC2P45880 294 aaPredicted RBP4.43□□□□□ -1.7
VPS53-219ENST00000576019 XKP51811 444 aa4.43□□□□□ -1.7
VPS53-219ENST00000576019 CD300CQ08708 224 aa4.43□□□□□ -1.7
VPS53-219ENST00000576019 DYNC1I2Q13409 638 aaKnown RBP4.43□□□□□ -1.7
VPS53-219ENST00000576019 UNC119Q13432 240 aa4.43□□□□□ -1.7
VPS53-219ENST00000576019 OR7A5Q15622 319 aa4.43□□□□□ -1.7
VPS53-219ENST00000576019 ZFP69Q49AA0 526 aa4.43□□□□□ -1.7
VPS53-219ENST00000576019 CPTPQ5TA50 214 aa4.43□□□□□ -1.7
VPS53-219ENST00000576019 PAGE2Q7Z2X7 111 aa4.43□□□□□ -1.7
VPS53-219ENST00000576019 MAPK1IP1LQ8NDC0 245 aa4.43□□□□□ -1.7
VPS53-219ENST00000576019 OR8J2Q8NGG1 315 aa4.43□□□□□ -1.7
VPS53-219ENST00000576019 MRAPQ8TCY5 172 aa4.43□□□□□ -1.7
VPS53-219ENST00000576019 NPRL2Q8WTW4 380 aa4.43□□□□□ -1.7
VPS53-219ENST00000576019 APH1BQ8WW43 257 aa4.43□□□□□ -1.7
VPS53-219ENST00000576019 DNAJC1Q96KC8 554 aaKnown RBP4.43□□□□□ -1.7
VPS53-219ENST00000576019 PKMYT1Q99640 499 aa4.43□□□□□ -1.7
VPS53-219ENST00000576019 TRIM51Q9BSJ1 452 aa4.43□□□□□ -1.7
VPS53-219ENST00000576019 PARD6GQ9BYG4 376 aaPredicted RBP4.43□□□□□ -1.7
VPS53-219ENST00000576019 SELENOIQ9C0D9 397 aa4.43□□□□□ -1.7
VPS53-219ENST00000576019 C20orf85Q9H1P6 137 aa4.43□□□□□ -1.7
VPS53-219ENST00000576019 ZNF556Q9HAH1 456 aa4.43□□□□□ -1.7
VPS53-219ENST00000576019 EXD2Q9NVH0 621 aa4.43□□□□□ -1.7
VPS53-219ENST00000576019 DHRS4-AS1Q9P1J3 65 aa4.43□□□□□ -1.7
VPS53-219ENST00000576019 HECTD4Q9Y4D8 3996 aa4.43□□□□□ -1.7
VPS53-219ENST00000576019 FREM1Q5H8C1 2179 aa4.43□□□□□ -1.7
VPS53-219ENST00000576019 IGHV1OR15-1A0A075B7D0 117 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 IGKV1D-13A0A0B4J2D9 117 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 FAM72CH0Y354 149 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 DFFAO00273 331 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 AIFM1O95831 613 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 PET100P0DJ07 73 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 IGKV1-13P0DP09 117 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 TCP1P17987 556 aaKnown RBP4.42□□□□□ -1.7
VPS53-219ENST00000576019 GPX4P36969 197 aaPredicted RBP4.42□□□□□ -1.7
VPS53-219ENST00000576019 KIR2DS4P43632 304 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 THBS3P49746 956 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 RND2P52198 227 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 APOC4P55056 127 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 NUTF2P61970 127 aaKnown RBP4.42□□□□□ -1.7
VPS53-219ENST00000576019 TGFBR3Q03167 851 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 ELOCQ15369 112 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 C6orf52Q5T4I8 152 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 C9orf64Q5T6V5 341 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 FAM72AQ5TYM5 149 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 KHDRBS2Q5VWX1 349 aaKnown RBP4.42□□□□□ -1.7
VPS53-219ENST00000576019 RUSC1-AS1Q66K80 236 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 FAM72DQ6L9T8 149 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 NOTCH2NLQ7Z3S9 236 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 C17orf82Q86X59 251 aaPredicted RBP4.42□□□□□ -1.7
VPS53-219ENST00000576019 FAM72BQ86X60 149 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 KRT222Q8N1A0 295 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 NECAP1Q8NC96 275 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 OR2A1Q8NGT9 310 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 OR9G1Q8NH87 305 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 KLK6Q92876 244 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 PIK3IP1Q96FE7 263 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 RBBP8Q99708 897 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 TSG101Q99816 390 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 AGMATQ9BSE5 352 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 LRRC19Q9H756 370 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 WDR54Q9H977 334 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 LHX9Q9NQ69 397 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 IFT46Q9NQC8 304 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 SDHAF2Q9NX18 166 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 TMEM9Q9P0T7 183 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 RNF7Q9UBF6 113 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 KLHL21Q9UJP4 597 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 ST3GAL6Q9Y274 331 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 CADP27708 2225 aa4.42□□□□□ -1.7
VPS53-219ENST00000576019 DNAH9Q9NYC9 4486 aa4.41□□□□□ -1.7
VPS53-219ENST00000576019 LCE6AA0A183 80 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms