RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 J3QLW9 94 aa16.66■□□□□ 0.26
CLK3-225ENST00000569063 SLC1A7O00341 560 aa16.66■□□□□ 0.26
CLK3-225ENST00000569063 MELTFP08582 738 aa16.66■□□□□ 0.26
CLK3-225ENST00000569063 ZNF19P17023 458 aa16.66■□□□□ 0.26
CLK3-225ENST00000569063 GUCA2AQ02747 115 aa16.66■□□□□ 0.26
CLK3-225ENST00000569063 PDZD9Q8IXQ8 264 aa16.66■□□□□ 0.26
CLK3-225ENST00000569063 STMN2Q93045 179 aa16.66■□□□□ 0.26
CLK3-225ENST00000569063 PELI1Q96FA3 418 aa16.66■□□□□ 0.26
CLK3-225ENST00000569063 C4orf36Q96KX1 117 aa16.66■□□□□ 0.26
CLK3-225ENST00000569063 RDH12Q96NR8 316 aa16.66■□□□□ 0.26
CLK3-225ENST00000569063 UNKLQ9H9P5 680 aaKnown RBP16.66■□□□□ 0.26
CLK3-225ENST00000569063 ELL3Q9HB65 397 aaPredicted RBP16.66■□□□□ 0.26
CLK3-225ENST00000569063 SIRT7Q9NRC8 400 aa16.66■□□□□ 0.26
CLK3-225ENST00000569063 MRPS18AQ9NVS2 196 aaKnown RBP16.66■□□□□ 0.26
CLK3-225ENST00000569063 POMT1Q9Y6A1 747 aa16.66■□□□□ 0.26
CLK3-225ENST00000569063 TENM1Q9UKZ4 2725 aa16.65■□□□□ 0.26
CLK3-225ENST00000569063 A0A0U1RQK1 487 aa16.65■□□□□ 0.26
CLK3-225ENST00000569063 RNASEK-C17orf49H0YIS7 233 aa16.65■□□□□ 0.26
CLK3-225ENST00000569063 FADS2O95864 444 aaKnown RBP16.65■□□□□ 0.26
CLK3-225ENST00000569063 KNG1P01042 644 aa16.65■□□□□ 0.26
CLK3-225ENST00000569063 IGHA1P01876 353 aa16.65■□□□□ 0.26
CLK3-225ENST00000569063 HTR1AP08908 422 aa16.65■□□□□ 0.26
CLK3-225ENST00000569063 RAB40BQ12829 278 aa16.65■□□□□ 0.26
CLK3-225ENST00000569063 CNN3Q15417 329 aaKnown RBP16.65■□□□□ 0.26
CLK3-225ENST00000569063 ZSCAN26Q16670 478 aa16.65■□□□□ 0.26
CLK3-225ENST00000569063 LHFPL3Q86UP9 236 aa16.65■□□□□ 0.26
CLK3-225ENST00000569063 SYS1Q8N2H4 156 aa16.65■□□□□ 0.26
CLK3-225ENST00000569063 DNAAF1Q8NEP3 725 aa16.65■□□□□ 0.26
CLK3-225ENST00000569063 TNFRSF14Q92956 283 aa16.65■□□□□ 0.26
CLK3-225ENST00000569063 ADAT3Q96EY9 351 aaPredicted RBP16.65■□□□□ 0.26
CLK3-225ENST00000569063 ALG8Q9BVK2 526 aa16.65■□□□□ 0.26
CLK3-225ENST00000569063 METTL8Q9H825 291 aaKnown RBP16.65■□□□□ 0.26
CLK3-225ENST00000569063 INPP5EQ9NRR6 644 aa16.65■□□□□ 0.26
CLK3-225ENST00000569063 MTCH1Q9NZJ7 389 aa16.65■□□□□ 0.26
CLK3-225ENST00000569063 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.65■□□□□ 0.26
CLK3-225ENST00000569063 MYRFQ9Y2G1 1151 aa16.65■□□□□ 0.26
CLK3-225ENST00000569063 CAPZA1P52907 286 aa16.64■□□□□ 0.25
CLK3-225ENST00000569063 BLMHQ13867 455 aa16.64■□□□□ 0.25
CLK3-225ENST00000569063 NCR3LG1Q68D85 454 aa16.64■□□□□ 0.25
CLK3-225ENST00000569063 UTS2BQ765I0 119 aa16.64■□□□□ 0.25
CLK3-225ENST00000569063 BATF2Q8N1L9 274 aa16.64■□□□□ 0.25
CLK3-225ENST00000569063 APH1BQ8WW43 257 aa16.64■□□□□ 0.25
CLK3-225ENST00000569063 SSMEM1Q8WWF3 244 aa16.64■□□□□ 0.25
CLK3-225ENST00000569063 FGGYQ96C11 551 aa16.64■□□□□ 0.25
CLK3-225ENST00000569063 BORCS8Q96FH0 119 aa16.64■□□□□ 0.25
CLK3-225ENST00000569063 CEP19Q96LK0 163 aa16.64■□□□□ 0.25
CLK3-225ENST00000569063 ZNF649Q9BS31 505 aa16.64■□□□□ 0.25
CLK3-225ENST00000569063 AMBNQ9NP70 447 aa16.64■□□□□ 0.25
CLK3-225ENST00000569063 C19orf12Q9NSK7 152 aa16.64■□□□□ 0.25
CLK3-225ENST00000569063 SMPD3Q9NY59 655 aaPredicted RBP16.64■□□□□ 0.25
CLK3-225ENST00000569063 RPL36Q9Y3U8 105 aaKnown RBP16.64■□□□□ 0.25
CLK3-225ENST00000569063 IGKV1-9A0A0C4DH69 117 aa16.63■□□□□ 0.25
CLK3-225ENST00000569063 OR4C45A6NMZ5 311 aa16.63■□□□□ 0.25
CLK3-225ENST00000569063 CEBPDP49716 269 aaPredicted RBP16.63■□□□□ 0.25
CLK3-225ENST00000569063 RBP2P50120 134 aa16.63■□□□□ 0.25
CLK3-225ENST00000569063 DLX1P56177 255 aa16.63■□□□□ 0.25
CLK3-225ENST00000569063 ALKBH1Q13686 389 aaKnown RBP16.63■□□□□ 0.25
CLK3-225ENST00000569063 LPCAT4Q643R3 524 aa16.63■□□□□ 0.25
CLK3-225ENST00000569063 LDLRAD3Q86YD5 345 aa16.63■□□□□ 0.25
CLK3-225ENST00000569063 ZNF555Q8NEP9 628 aa16.63■□□□□ 0.25
CLK3-225ENST00000569063 TBC1D15Q8TC07 691 aa16.63■□□□□ 0.25
CLK3-225ENST00000569063 ZNF747Q9BV97 191 aa16.63■□□□□ 0.25
CLK3-225ENST00000569063 FAM234AQ9H0X4 552 aa16.63■□□□□ 0.25
CLK3-225ENST00000569063 ISG20L2Q9H9L3 353 aaKnown RBP16.63■□□□□ 0.25
CLK3-225ENST00000569063 ERVK13-1Q9NX77 482 aa16.63■□□□□ 0.25
CLK3-225ENST00000569063 OR14J1Q9UGF5 321 aa16.63■□□□□ 0.25
CLK3-225ENST00000569063 HHLA2Q9UM44 414 aa16.63■□□□□ 0.25
CLK3-225ENST00000569063 CAB39Q9Y376 341 aaPredicted RBP16.63■□□□□ 0.25
CLK3-225ENST00000569063 F8VVB4 439 aa16.62■□□□□ 0.25
CLK3-225ENST00000569063 F8VWA3 439 aa16.62■□□□□ 0.25
CLK3-225ENST00000569063 NPFFO15130 113 aa16.62■□□□□ 0.25
CLK3-225ENST00000569063 TK1P04183 234 aa16.62■□□□□ 0.25
CLK3-225ENST00000569063 ZNF20P17024 532 aa16.62■□□□□ 0.25
CLK3-225ENST00000569063 ATF1P18846 271 aa16.62■□□□□ 0.25
CLK3-225ENST00000569063 EEF1B2P24534 225 aaKnown RBP16.62■□□□□ 0.25
CLK3-225ENST00000569063 IER3P46695 156 aa16.62■□□□□ 0.25
CLK3-225ENST00000569063 UBE2E1P51965 193 aa16.62■□□□□ 0.25
CLK3-225ENST00000569063 ATP1B3P54709 279 aa16.62■□□□□ 0.25
CLK3-225ENST00000569063 RPL31P62899 125 aaKnown RBP16.62■□□□□ 0.25
CLK3-225ENST00000569063 PRB3Q04118 309 aaPredicted RBP16.62■□□□□ 0.25
CLK3-225ENST00000569063 KLHL22Q53GT1 634 aa16.62■□□□□ 0.25
CLK3-225ENST00000569063 SLC25A26Q70HW3 274 aa16.62■□□□□ 0.25
CLK3-225ENST00000569063 FAM185AQ8N0U4 392 aa16.62■□□□□ 0.25
CLK3-225ENST00000569063 OR52I1Q8NGK6 324 aa16.62■□□□□ 0.25
CLK3-225ENST00000569063 OR5D13Q8NGL4 314 aa16.62■□□□□ 0.25
CLK3-225ENST00000569063 SLAMF9Q96A28 289 aa16.62■□□□□ 0.25
CLK3-225ENST00000569063 SPSB1Q96BD6 273 aa16.62■□□□□ 0.25
CLK3-225ENST00000569063 CHIAQ9BZP6 476 aa16.62■□□□□ 0.25
CLK3-225ENST00000569063 TNFRSF19Q9NS68 423 aa16.62■□□□□ 0.25
CLK3-225ENST00000569063 FAM96BQ9Y3D0 163 aa16.62■□□□□ 0.25
CLK3-225ENST00000569063 A0A1W2PPH5 198 aa16.61■□□□□ 0.25
CLK3-225ENST00000569063 FAM181BA6NEQ2 426 aa16.61■□□□□ 0.25
CLK3-225ENST00000569063 K7N7A8 449 aa16.61■□□□□ 0.25
CLK3-225ENST00000569063 WBP4O75554 376 aaKnown RBP16.61■□□□□ 0.25
CLK3-225ENST00000569063 RPSAP08865 295 aaKnown RBP16.61■□□□□ 0.25
CLK3-225ENST00000569063 PRKACBP22694 351 aa16.61■□□□□ 0.25
CLK3-225ENST00000569063 MTCP1P56278 107 aa16.61■□□□□ 0.25
CLK3-225ENST00000569063 MRPL28Q13084 256 aaKnown RBP16.61■□□□□ 0.25
CLK3-225ENST00000569063 KLRD1Q13241 179 aa16.61■□□□□ 0.25
CLK3-225ENST00000569063 TMEM200BQ69YZ2 307 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms