RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 GJC3Q8NFK1 279 aa12.71□□□□□ -0.38
VPS35-210ENST00000568784 MOB1AQ9H8S9 216 aa12.71□□□□□ -0.38
VPS35-210ENST00000568784 TMEM100Q9NV29 134 aa12.71□□□□□ -0.38
VPS35-210ENST00000568784 DKKL1Q9UK85 242 aa12.71□□□□□ -0.38
VPS35-210ENST00000568784 RBM7Q9Y580 266 aaKnown RBP12.71□□□□□ -0.38
VPS35-210ENST00000568784 ZDBF2Q9HCK1 2354 aa12.7□□□□□ -0.38
VPS35-210ENST00000568784 GSK3AP49840 483 aa12.7□□□□□ -0.38
VPS35-210ENST00000568784 LBX1P52954 281 aa12.7□□□□□ -0.38
VPS35-210ENST00000568784 TMEM268Q5VZI3 342 aa12.7□□□□□ -0.38
VPS35-210ENST00000568784 SKA3Q8IX90 412 aa12.7□□□□□ -0.38
VPS35-210ENST00000568784 TRIOBPQ9H2D6 2365 aa12.7□□□□□ -0.38
VPS35-210ENST00000568784 IGHV1OR15-9A0A0B4J2B8 117 aa12.7□□□□□ -0.38
VPS35-210ENST00000568784 ZNF727A8MUV8 499 aa12.7□□□□□ -0.38
VPS35-210ENST00000568784 YIF1AO95070 293 aa12.7□□□□□ -0.38
VPS35-210ENST00000568784 GRB2P62993 217 aaKnown RBP12.7□□□□□ -0.38
VPS35-210ENST00000568784 COL13A1Q5TAT6 717 aaPredicted RBP12.7□□□□□ -0.38
VPS35-210ENST00000568784 FBXL14Q8N1E6 418 aa12.7□□□□□ -0.38
VPS35-210ENST00000568784 C17orf78Q8N4C9 275 aa12.7□□□□□ -0.38
VPS35-210ENST00000568784 ZNF385AQ96PM9 386 aaKnown RBP12.7□□□□□ -0.38
VPS35-210ENST00000568784 B3GAT1Q9P2W7 334 aa12.7□□□□□ -0.38
VPS35-210ENST00000568784 ST8SIA3O43173 380 aa12.7□□□□□ -0.38
VPS35-210ENST00000568784 TRAPPC6AO75865 159 aa12.7□□□□□ -0.38
VPS35-210ENST00000568784 MBPP02686 304 aaPredicted RBP12.7□□□□□ -0.38
VPS35-210ENST00000568784 MT-ND4LP03901 98 aa12.7□□□□□ -0.38
VPS35-210ENST00000568784 PGA4P0DJD7 388 aa12.7□□□□□ -0.38
VPS35-210ENST00000568784 PGA3P0DJD8 388 aa12.7□□□□□ -0.38
VPS35-210ENST00000568784 SULT1A1P50225 295 aa12.7□□□□□ -0.38
VPS35-210ENST00000568784 PIGYQ3MUY2 71 aa12.7□□□□□ -0.38
VPS35-210ENST00000568784 PFDN5Q99471 154 aa12.7□□□□□ -0.38
VPS35-210ENST00000568784 OSGIN2Q9Y236 505 aa12.7□□□□□ -0.38
VPS35-210ENST00000568784 SERPINE3A8MV23 424 aa12.69□□□□□ -0.38
VPS35-210ENST00000568784 E5RGE8 158 aa12.69□□□□□ -0.38
VPS35-210ENST00000568784 MASP2O00187 686 aa12.69□□□□□ -0.38
VPS35-210ENST00000568784 UBE2KP61086 200 aa12.69□□□□□ -0.38
VPS35-210ENST00000568784 C4orf17Q53FE4 359 aa12.69□□□□□ -0.38
VPS35-210ENST00000568784 ANKRD37Q7Z713 158 aa12.69□□□□□ -0.38
VPS35-210ENST00000568784 ZNF695Q8IW36 515 aa12.69□□□□□ -0.38
VPS35-210ENST00000568784 SPTSSAQ969W0 71 aa12.69□□□□□ -0.38
VPS35-210ENST00000568784 SMIM8Q96KF7 97 aa12.69□□□□□ -0.38
VPS35-210ENST00000568784 OXGR1Q96P68 337 aa12.69□□□□□ -0.38
VPS35-210ENST00000568784 ANXA10Q9UJ72 324 aa12.69□□□□□ -0.38
VPS35-210ENST00000568784 NSG2Q9Y328 171 aa12.69□□□□□ -0.38
VPS35-210ENST00000568784 TRAF3IP2O43734 574 aaPredicted RBP12.69□□□□□ -0.38
VPS35-210ENST00000568784 SSSCA1O60232 199 aa12.69□□□□□ -0.38
VPS35-210ENST00000568784 RAB5AP20339 215 aa12.69□□□□□ -0.38
VPS35-210ENST00000568784 CHATP28329 748 aa12.69□□□□□ -0.38
VPS35-210ENST00000568784 TAGLN2P37802 199 aaKnown RBP12.69□□□□□ -0.38
VPS35-210ENST00000568784 ZNF84P51523 738 aa12.69□□□□□ -0.38
VPS35-210ENST00000568784 MRGPRX4Q96LA9 322 aa12.69□□□□□ -0.38
VPS35-210ENST00000568784 ALKBH3Q96Q83 286 aaPredicted RBP12.69□□□□□ -0.38
VPS35-210ENST00000568784 RARRES2Q99969 163 aa12.69□□□□□ -0.38
VPS35-210ENST00000568784 SYT3Q9BQG1 590 aa12.69□□□□□ -0.38
VPS35-210ENST00000568784 OCSTAMPQ9BR26 566 aa12.69□□□□□ -0.38
VPS35-210ENST00000568784 AK3Q9UIJ7 227 aa12.69□□□□□ -0.38
VPS35-210ENST00000568784 TIAF1O95411 115 aa12.69□□□□□ -0.38
VPS35-210ENST00000568784 IGHMP01871 453 aa12.69□□□□□ -0.38
VPS35-210ENST00000568784 CELA2AP08217 269 aa12.69□□□□□ -0.38
VPS35-210ENST00000568784 RPS18P62269 152 aaKnown RBP12.69□□□□□ -0.38
VPS35-210ENST00000568784 C15orf54Q8N8G6 183 aa12.69□□□□□ -0.38
VPS35-210ENST00000568784 OR52M1Q8NGK5 317 aa12.69□□□□□ -0.38
VPS35-210ENST00000568784 OR6S1Q8NH40 331 aa12.69□□□□□ -0.38
VPS35-210ENST00000568784 NECAP2Q9NVZ3 263 aa12.69□□□□□ -0.38
VPS35-210ENST00000568784 WNT16Q9UBV4 365 aa12.69□□□□□ -0.38
VPS35-210ENST00000568784 RARRES3Q9UL19 164 aa12.69□□□□□ -0.38
VPS35-210ENST00000568784 GEMIN2O14893 280 aaKnown RBP12.68□□□□□ -0.38
VPS35-210ENST00000568784 IFNA17P01571 189 aa12.68□□□□□ -0.38
VPS35-210ENST00000568784 ZNF16P17020 682 aaPredicted RBP12.68□□□□□ -0.38
VPS35-210ENST00000568784 DUSP1P28562 367 aa12.68□□□□□ -0.38
VPS35-210ENST00000568784 HTR5AP47898 357 aa12.68□□□□□ -0.38
VPS35-210ENST00000568784 AFF3P51826 1226 aaKnown RBP12.68□□□□□ -0.38
VPS35-210ENST00000568784 CFHR1Q03591 330 aa12.68□□□□□ -0.38
VPS35-210ENST00000568784 OR14K1Q8NGZ2 314 aa12.68□□□□□ -0.38
VPS35-210ENST00000568784 PARP11Q9NR21 331 aa12.68□□□□□ -0.38
VPS35-210ENST00000568784 TRBV6-7A0A0A0MS04 114 aa12.68□□□□□ -0.38
VPS35-210ENST00000568784 ATXN7O15265 892 aaPredicted RBP12.68□□□□□ -0.38
VPS35-210ENST00000568784 DHRS3O75911 302 aa12.68□□□□□ -0.38
VPS35-210ENST00000568784 CFPP27918 469 aa12.68□□□□□ -0.38
VPS35-210ENST00000568784 POLR2GP62487 172 aaKnown RBP eCLIP12.68□□□□□ -0.38
VPS35-210ENST00000568784 PLCXD3Q63HM9 321 aa12.68□□□□□ -0.38
VPS35-210ENST00000568784 HIST2H3AQ71DI3 136 aa12.68□□□□□ -0.38
VPS35-210ENST00000568784 TMEM123Q8N131 208 aa12.68□□□□□ -0.38
VPS35-210ENST00000568784 WDSUB1Q8N9V3 476 aa12.68□□□□□ -0.38
VPS35-210ENST00000568784 SLC25A43Q8WUT9 341 aaPredicted RBP12.68□□□□□ -0.38
VPS35-210ENST00000568784 NELFAQ9H3P2 528 aa12.68□□□□□ -0.38
VPS35-210ENST00000568784 AKIRIN1Q9H9L7 192 aaPredicted RBP12.68□□□□□ -0.38
VPS35-210ENST00000568784 DEDDO75618 318 aa12.68□□□□□ -0.38
VPS35-210ENST00000568784 S100A8P05109 93 aa12.68□□□□□ -0.38
VPS35-210ENST00000568784 SLC35A1P78382 337 aa12.68□□□□□ -0.38
VPS35-210ENST00000568784 ZP4Q12836 540 aa12.68□□□□□ -0.38
VPS35-210ENST00000568784 OR51B6Q9H340 312 aa12.68□□□□□ -0.38
VPS35-210ENST00000568784 CACFD1Q9UGQ2 172 aa12.68□□□□□ -0.38
VPS35-210ENST00000568784 LY86O95711 162 aa12.67□□□□□ -0.38
VPS35-210ENST00000568784 B4GALT1P15291 398 aa12.67□□□□□ -0.38
VPS35-210ENST00000568784 PLPPR5Q32ZL2 321 aa12.67□□□□□ -0.38
VPS35-210ENST00000568784 C5orf24Q7Z6I8 188 aa12.67□□□□□ -0.38
VPS35-210ENST00000568784 PRR18Q8N4B5 295 aa12.67□□□□□ -0.38
VPS35-210ENST00000568784 PLEKHA2Q9HB19 425 aa12.67□□□□□ -0.38
VPS35-210ENST00000568784 MYOTQ9UBF9 498 aa12.67□□□□□ -0.38
VPS35-210ENST00000568784 ST3GAL6Q9Y274 331 aa12.67□□□□□ -0.38
VPS35-210ENST00000568784 DNAJC13O75165 2243 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms