RNA–Protein interactions for RNA: ENST00000567804.1

CLN3-228, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-228ENST00000567804 SRSF10O75494 262 aaKnown RBP12.09□□□□□ -0.47
CLN3-228ENST00000567804 VSIG10L2P0DP72 767 aa12.09□□□□□ -0.47
CLN3-228ENST00000567804 EPHA2P29317 976 aa12.09□□□□□ -0.47
CLN3-228ENST00000567804 LGALS4P56470 323 aa12.09□□□□□ -0.47
CLN3-228ENST00000567804 ERVFRD-1P60508 538 aa12.09□□□□□ -0.47
CLN3-228ENST00000567804 TMEM42Q69YG0 159 aa12.09□□□□□ -0.47
CLN3-228ENST00000567804 ZNF573Q86YE8 665 aa12.09□□□□□ -0.47
CLN3-228ENST00000567804 DTX3Q8N9I9 347 aa12.09□□□□□ -0.47
CLN3-228ENST00000567804 OR4M1Q8NGD0 313 aa12.09□□□□□ -0.47
CLN3-228ENST00000567804 ASB17Q8WXJ9 295 aa12.09□□□□□ -0.47
CLN3-228ENST00000567804 NRIP2Q9BQI9 281 aa12.09□□□□□ -0.47
CLN3-228ENST00000567804 GABARAPL1Q9H0R8 117 aa12.09□□□□□ -0.47
CLN3-228ENST00000567804 GPR173Q9NS66 373 aa12.09□□□□□ -0.47
CLN3-228ENST00000567804 IKZF2Q9UKS7 526 aa12.09□□□□□ -0.47
CLN3-228ENST00000567804 POLDIP2Q9Y2S7 368 aa12.09□□□□□ -0.47
CLN3-228ENST00000567804 FAM90A8PA6NJQ4 464 aa12.08□□□□□ -0.48
CLN3-228ENST00000567804 SAC3D1A6NKF1 404 aa12.08□□□□□ -0.48
CLN3-228ENST00000567804 VGLL3A8MV65 326 aa12.08□□□□□ -0.48
CLN3-228ENST00000567804 M0R129 80 aa12.08□□□□□ -0.48
CLN3-228ENST00000567804 NXPH2O95156 264 aa12.08□□□□□ -0.48
CLN3-228ENST00000567804 TK1P04183 234 aa12.08□□□□□ -0.48
CLN3-228ENST00000567804 FCGR1AP12314 374 aa12.08□□□□□ -0.48
CLN3-228ENST00000567804 MPZP25189 248 aa12.08□□□□□ -0.48
CLN3-228ENST00000567804 CRISP1P54107 249 aa12.08□□□□□ -0.48
CLN3-228ENST00000567804 FBLN7Q53RD9 439 aa12.08□□□□□ -0.48
CLN3-228ENST00000567804 CLVS2Q5SYC1 327 aa12.08□□□□□ -0.48
CLN3-228ENST00000567804 ZNF782Q6ZMW2 699 aaPredicted RBP12.08□□□□□ -0.48
CLN3-228ENST00000567804 LHFPL4Q7Z7J7 247 aa12.08□□□□□ -0.48
CLN3-228ENST00000567804 CALHM1Q8IU99 346 aa12.08□□□□□ -0.48
CLN3-228ENST00000567804 ZDHHC13Q8IUH4 622 aa12.08□□□□□ -0.48
CLN3-228ENST00000567804 BATF2Q8N1L9 274 aa12.08□□□□□ -0.48
CLN3-228ENST00000567804 DYNAPQ8N1N2 210 aa12.08□□□□□ -0.48
CLN3-228ENST00000567804 CNN2Q99439 309 aaKnown RBP12.08□□□□□ -0.48
CLN3-228ENST00000567804 NKX3-1Q99801 234 aaPredicted RBP12.08□□□□□ -0.48
CLN3-228ENST00000567804 MOB1AQ9H8S9 216 aa12.08□□□□□ -0.48
CLN3-228ENST00000567804 ZNF702PQ9H963 129 aa12.08□□□□□ -0.48
CLN3-228ENST00000567804 HES4Q9HCC6 221 aa12.08□□□□□ -0.48
CLN3-228ENST00000567804 OR14J1Q9UGF5 321 aa12.08□□□□□ -0.48
CLN3-228ENST00000567804 OAZ3Q9UMX2 235 aa12.08□□□□□ -0.48
CLN3-228ENST00000567804 GTF2A1LQ9UNN4 478 aa12.08□□□□□ -0.48
CLN3-228ENST00000567804 V9GYS6 101 aa12.08□□□□□ -0.48
CLN3-228ENST00000567804 PQLC2LA1A4F0 135 aa12.07□□□□□ -0.48
CLN3-228ENST00000567804 C17orf98A8MV24 154 aa12.07□□□□□ -0.48
CLN3-228ENST00000567804 LOC110117498-PIK3R3F6TDL0 507 aa12.07□□□□□ -0.48
CLN3-228ENST00000567804 DLGAP1O14490 977 aa12.07□□□□□ -0.48
CLN3-228ENST00000567804 PIPP12273 146 aaPredicted RBP12.07□□□□□ -0.48
CLN3-228ENST00000567804 DLX6P56179 175 aa12.07□□□□□ -0.48
CLN3-228ENST00000567804 KDM4DQ6B0I6 523 aa12.07□□□□□ -0.48
CLN3-228ENST00000567804 ZNF322Q6U7Q0 402 aaPredicted RBP12.07□□□□□ -0.48
CLN3-228ENST00000567804 ELMOD2Q8IZ81 293 aa12.07□□□□□ -0.48
CLN3-228ENST00000567804 OR14K1Q8NGZ2 314 aa12.07□□□□□ -0.48
CLN3-228ENST00000567804 DNAJC9Q8WXX5 260 aa12.07□□□□□ -0.48
CLN3-228ENST00000567804 CENPNQ96H22 339 aaPredicted RBP12.07□□□□□ -0.48
CLN3-228ENST00000567804 CIB1Q99828 191 aa12.07□□□□□ -0.48
CLN3-228ENST00000567804 KRT84Q9NSB2 600 aa12.07□□□□□ -0.48
CLN3-228ENST00000567804 SERTAD4Q9NUC0 356 aa12.07□□□□□ -0.48
CLN3-228ENST00000567804 TCF19Q9Y242 345 aa12.07□□□□□ -0.48
CLN3-228ENST00000567804 TBL2Q9Y4P3 447 aaKnown RBP12.07□□□□□ -0.48
CLN3-228ENST00000567804 R4GMQ9 66 aa12.07□□□□□ -0.48
CLN3-228ENST00000567804 NOTCH3Q9UM47 2321 aa12.06□□□□□ -0.48
CLN3-228ENST00000567804 A0A1B0GTI1 187 aa12.06□□□□□ -0.48
CLN3-228ENST00000567804 DHRS7CA6NNS2 312 aa12.06□□□□□ -0.48
CLN3-228ENST00000567804 ODF3BA8MYP8 253 aa12.06□□□□□ -0.48
CLN3-228ENST00000567804 MAGEB4O15481 346 aaPredicted RBP12.06□□□□□ -0.48
CLN3-228ENST00000567804 PRKYO43930 277 aa12.06□□□□□ -0.48
CLN3-228ENST00000567804 FBXO24O75426 580 aa12.06□□□□□ -0.48
CLN3-228ENST00000567804 PRB2P02812 416 aaPredicted RBP12.06□□□□□ -0.48
CLN3-228ENST00000567804 POLR2IP36954 125 aaKnown RBP12.06□□□□□ -0.48
CLN3-228ENST00000567804 CXCR4P61073 352 aa12.06□□□□□ -0.48
CLN3-228ENST00000567804 ERVK11-1P61568 191 aa12.06□□□□□ -0.48
CLN3-228ENST00000567804 ESRRGP62508 458 aa12.06□□□□□ -0.48
CLN3-228ENST00000567804 HABP2Q14520 560 aaPredicted RBP12.06□□□□□ -0.48
CLN3-228ENST00000567804 PTGES3Q15185 160 aaKnown RBP12.06□□□□□ -0.48
CLN3-228ENST00000567804 PLA1AQ53H76 456 aa12.06□□□□□ -0.48
CLN3-228ENST00000567804 BCL2L15Q5TBC7 163 aa12.06□□□□□ -0.48
CLN3-228ENST00000567804 CCBE1Q6UXH8 406 aaPredicted RBP12.06□□□□□ -0.48
CLN3-228ENST00000567804 PLEKHG7Q6ZR37 379 aa12.06□□□□□ -0.48
CLN3-228ENST00000567804 Q6ZSR3 168 aa12.06□□□□□ -0.48
CLN3-228ENST00000567804 LYG1Q8N1E2 194 aa12.06□□□□□ -0.48
CLN3-228ENST00000567804 Q8N2B8 174 aa12.06□□□□□ -0.48
CLN3-228ENST00000567804 FOXRED1Q96CU9 486 aaPredicted RBP12.06□□□□□ -0.48
CLN3-228ENST00000567804 APOL4Q9BPW4 351 aa12.06□□□□□ -0.48
CLN3-228ENST00000567804 CDCA4Q9BXL8 241 aa12.06□□□□□ -0.48
CLN3-228ENST00000567804 PKIBQ9C010 78 aa12.06□□□□□ -0.48
CLN3-228ENST00000567804 OR52A1Q9UKL2 312 aa12.06□□□□□ -0.48
CLN3-228ENST00000567804 A6NDX4 124 aa12.05□□□□□ -0.48
CLN3-228ENST00000567804 A6NIN4 97 aa12.05□□□□□ -0.48
CLN3-228ENST00000567804 K7N7A8 449 aa12.05□□□□□ -0.48
CLN3-228ENST00000567804 RBP4P02753 201 aa12.05□□□□□ -0.48
CLN3-228ENST00000567804 ARG1P05089 322 aa12.05□□□□□ -0.48
CLN3-228ENST00000567804 RAB13P51153 203 aa12.05□□□□□ -0.48
CLN3-228ENST00000567804 COL10A1Q03692 680 aa12.05□□□□□ -0.48
CLN3-228ENST00000567804 IL24Q13007 206 aa12.05□□□□□ -0.48
CLN3-228ENST00000567804 FAM189A2Q15884 450 aa12.05□□□□□ -0.48
CLN3-228ENST00000567804 LDLRAD2Q5SZI1 272 aa12.05□□□□□ -0.48
CLN3-228ENST00000567804 ZNF626Q68DY1 528 aa12.05□□□□□ -0.48
CLN3-228ENST00000567804 Q6ZPA2 131 aa12.05□□□□□ -0.48
CLN3-228ENST00000567804 MEPCEQ7L2J0 689 aaKnown RBP12.05□□□□□ -0.48
CLN3-228ENST00000567804 BCDIN3DQ7Z5W3 292 aaKnown RBP12.05□□□□□ -0.48
CLN3-228ENST00000567804 ANGPTL5Q86XS5 388 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms