RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 A8MV72 311 aaPredicted RBP16.27■□□□□ 0.2
CLN3-225ENST00000566824 ZNF879B4DU55 563 aa16.27■□□□□ 0.2
CLN3-225ENST00000566824 TRAPPC2LH3BP13 241 aa16.27■□□□□ 0.2
CLN3-225ENST00000566824 ANGPTL7O43827 346 aa16.27■□□□□ 0.2
CLN3-225ENST00000566824 NOS1APO75052 506 aaPredicted RBP16.27■□□□□ 0.2
CLN3-225ENST00000566824 ALX3O95076 343 aa16.27■□□□□ 0.2
CLN3-225ENST00000566824 CALCBP10092 127 aa16.27■□□□□ 0.2
CLN3-225ENST00000566824 MUC1P15941 1255 aaPredicted RBP16.27■□□□□ 0.2
CLN3-225ENST00000566824 NPBWR2P48146 333 aa16.27■□□□□ 0.2
CLN3-225ENST00000566824 CEBPDP49716 269 aaPredicted RBP16.27■□□□□ 0.2
CLN3-225ENST00000566824 MICBQ29980 383 aa16.27■□□□□ 0.2
CLN3-225ENST00000566824 FAM166AQ6J272 317 aa16.27■□□□□ 0.2
CLN3-225ENST00000566824 LHFPL2Q6ZUX7 228 aa16.27■□□□□ 0.2
CLN3-225ENST00000566824 OR52N4Q8NGI2 321 aa16.27■□□□□ 0.2
CLN3-225ENST00000566824 ANGPTL6Q8NI99 470 aa16.27■□□□□ 0.2
CLN3-225ENST00000566824 TMEM203Q969S6 136 aa16.27■□□□□ 0.2
CLN3-225ENST00000566824 PPIL3Q9H2H8 161 aaKnown RBP16.27■□□□□ 0.2
CLN3-225ENST00000566824 ISYNA1Q9NPH2 558 aa16.27■□□□□ 0.2
CLN3-225ENST00000566824 MMP26Q9NRE1 261 aa16.27■□□□□ 0.2
CLN3-225ENST00000566824 HIF1ANQ9NWT6 349 aa16.27■□□□□ 0.2
CLN3-225ENST00000566824 NLKQ9UBE8 527 aa16.27■□□□□ 0.2
CLN3-225ENST00000566824 DNAJB11Q9UBS4 358 aa16.27■□□□□ 0.2
CLN3-225ENST00000566824 SVEP1Q4LDE5 3571 aa16.26■□□□□ 0.19
CLN3-225ENST00000566824 OR2AT4A6NND4 320 aa16.26■□□□□ 0.19
CLN3-225ENST00000566824 CD2P06729 351 aa16.26■□□□□ 0.19
CLN3-225ENST00000566824 HCKP08631 526 aa16.26■□□□□ 0.19
CLN3-225ENST00000566824 PSG2P11465 335 aa16.26■□□□□ 0.19
CLN3-225ENST00000566824 RAB3AP20336 220 aa16.26■□□□□ 0.19
CLN3-225ENST00000566824 PITPNBP48739 271 aa16.26■□□□□ 0.19
CLN3-225ENST00000566824 ZP1P60852 638 aa16.26■□□□□ 0.19
CLN3-225ENST00000566824 MLLT11Q13015 90 aaPredicted RBP16.26■□□□□ 0.19
CLN3-225ENST00000566824 PDZK1IP1Q13113 114 aa16.26■□□□□ 0.19
CLN3-225ENST00000566824 SSX1Q16384 188 aa16.26■□□□□ 0.19
CLN3-225ENST00000566824 UNQ9370/PRO34162Q6UXP9 181 aa16.26■□□□□ 0.19
CLN3-225ENST00000566824 IL17RELQ6ZVW7 336 aa16.26■□□□□ 0.19
CLN3-225ENST00000566824 OR8B3Q8NGG8 313 aa16.26■□□□□ 0.19
CLN3-225ENST00000566824 OR51F2Q8NH61 342 aa16.26■□□□□ 0.19
CLN3-225ENST00000566824 UFD1Q92890 307 aa16.26■□□□□ 0.19
CLN3-225ENST00000566824 TMEM186Q96B77 213 aa16.26■□□□□ 0.19
CLN3-225ENST00000566824 TMIGD2Q96BF3 282 aa16.26■□□□□ 0.19
CLN3-225ENST00000566824 GAFA1Q96PS6 74 aa16.26■□□□□ 0.19
CLN3-225ENST00000566824 OR8B2Q96RD0 313 aa16.26■□□□□ 0.19
CLN3-225ENST00000566824 HES4Q9HCC6 221 aa16.26■□□□□ 0.19
CLN3-225ENST00000566824 NOX4Q9NPH5 578 aa16.26■□□□□ 0.19
CLN3-225ENST00000566824 IL36RNQ9UBH0 155 aa16.26■□□□□ 0.19
CLN3-225ENST00000566824 METRNQ9UJH8 293 aa16.26■□□□□ 0.19
CLN3-225ENST00000566824 ZNF222Q9UK12 451 aa16.26■□□□□ 0.19
CLN3-225ENST00000566824 SF3B6Q9Y3B4 125 aaKnown RBP16.26■□□□□ 0.19
CLN3-225ENST00000566824 ACAA1P09110 424 aaPredicted RBP16.25■□□□□ 0.19
CLN3-225ENST00000566824 OCMP0CE72 109 aaPredicted RBP16.25■□□□□ 0.19
CLN3-225ENST00000566824 CPEP16870 476 aa16.25■□□□□ 0.19
CLN3-225ENST00000566824 BCL3P20749 454 aa16.25■□□□□ 0.19
CLN3-225ENST00000566824 TGFBR2P37173 567 aa16.25■□□□□ 0.19
CLN3-225ENST00000566824 DVL1P1P54792 670 aaPredicted RBP16.25■□□□□ 0.19
CLN3-225ENST00000566824 KISS1Q15726 138 aa16.25■□□□□ 0.19
CLN3-225ENST00000566824 ACSM3Q53FZ2 586 aa16.25■□□□□ 0.19
CLN3-225ENST00000566824 WDR25Q64LD2 544 aaPredicted RBP16.25■□□□□ 0.19
CLN3-225ENST00000566824 ZNF773Q6PK81 442 aa16.25■□□□□ 0.19
CLN3-225ENST00000566824 ZNF367Q7RTV3 350 aa16.25■□□□□ 0.19
CLN3-225ENST00000566824 C1QL2Q7Z5L3 287 aa16.25■□□□□ 0.19
CLN3-225ENST00000566824 PHC2Q8IXK0 858 aa16.25■□□□□ 0.19
CLN3-225ENST00000566824 CD177Q8N6Q3 437 aa16.25■□□□□ 0.19
CLN3-225ENST00000566824 CEP19Q96LK0 163 aa16.25■□□□□ 0.19
CLN3-225ENST00000566824 SSBP3Q9BWW4 388 aaPredicted RBP16.25■□□□□ 0.19
CLN3-225ENST00000566824 RBFOX1Q9NWB1 397 aaKnown RBP16.25■□□□□ 0.19
CLN3-225ENST00000566824 POLDIP2Q9Y2S7 368 aa16.25■□□□□ 0.19
CLN3-225ENST00000566824 A8MXK9 166 aa16.24■□□□□ 0.19
CLN3-225ENST00000566824 GABRPO00591 440 aa16.24■□□□□ 0.19
CLN3-225ENST00000566824 TMPRSS2O15393 492 aa16.24■□□□□ 0.19
CLN3-225ENST00000566824 MRPS14O60783 128 aaKnown RBP16.24■□□□□ 0.19
CLN3-225ENST00000566824 GPX5O75715 221 aa16.24■□□□□ 0.19
CLN3-225ENST00000566824 SC5DO75845 299 aa16.24■□□□□ 0.19
CLN3-225ENST00000566824 NXPH2O95156 264 aa16.24■□□□□ 0.19
CLN3-225ENST00000566824 PAX2Q02962 417 aa16.24■□□□□ 0.19
CLN3-225ENST00000566824 GPR50Q13585 617 aa16.24■□□□□ 0.19
CLN3-225ENST00000566824 KCTD21Q4G0X4 260 aa16.24■□□□□ 0.19
CLN3-225ENST00000566824 ESCO2Q56NI9 601 aa16.24■□□□□ 0.19
CLN3-225ENST00000566824 ARMCX4Q5H9R4 360 aa16.24■□□□□ 0.19
CLN3-225ENST00000566824 ATPAF1Q5TC12 328 aaPredicted RBP16.24■□□□□ 0.19
CLN3-225ENST00000566824 TMEM91Q6ZNR0 172 aa16.24■□□□□ 0.19
CLN3-225ENST00000566824 ZNF788Q6ZQV5 615 aa16.24■□□□□ 0.19
CLN3-225ENST00000566824 SATL1Q86VE3 508 aa16.24■□□□□ 0.19
CLN3-225ENST00000566824 GLCCI1Q86VQ1 547 aa16.24■□□□□ 0.19
CLN3-225ENST00000566824 C12orf43Q96C57 262 aaKnown RBP16.24■□□□□ 0.19
CLN3-225ENST00000566824 RASL12Q9NYN1 266 aa16.24■□□□□ 0.19
CLN3-225ENST00000566824 KAAG1Q9UBP8 84 aa16.24■□□□□ 0.19
CLN3-225ENST00000566824 LRCH1Q9Y2L9 728 aa16.24■□□□□ 0.19
CLN3-225ENST00000566824 MXRA5Q9NR99 2828 aa16.24■□□□□ 0.19
CLN3-225ENST00000566824 RFPL4AA6NLU0 287 aa16.23■□□□□ 0.19
CLN3-225ENST00000566824 C22orf46C9J442 243 aa16.23■□□□□ 0.19
CLN3-225ENST00000566824 RFPL4AL1F8VTS6 287 aa16.23■□□□□ 0.19
CLN3-225ENST00000566824 DVL1O14640 695 aa16.23■□□□□ 0.19
CLN3-225ENST00000566824 NDUFA2O43678 99 aa16.23■□□□□ 0.19
CLN3-225ENST00000566824 AVPP01185 164 aa16.23■□□□□ 0.19
CLN3-225ENST00000566824 FSTP19883 344 aa16.23■□□□□ 0.19
CLN3-225ENST00000566824 GNB2P62879 340 aa16.23■□□□□ 0.19
CLN3-225ENST00000566824 IKZF1Q13422 519 aa16.23■□□□□ 0.19
CLN3-225ENST00000566824 KCNJ8Q15842 424 aa16.23■□□□□ 0.19
CLN3-225ENST00000566824 DGUOKQ16854 277 aa16.23■□□□□ 0.19
CLN3-225ENST00000566824 CR1LQ2VPA4 569 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms