RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 TRAV18A0A075B6X5 111 aa25.93■■□□□ 1.74
CTCF-203ENST00000566078 CDIPTO14735 213 aa25.93■■□□□ 1.74
CTCF-203ENST00000566078 MNDAP41218 407 aa25.93■■□□□ 1.74
CTCF-203ENST00000566078 FAM189A2Q15884 450 aa25.93■■□□□ 1.74
CTCF-203ENST00000566078 MEX3BQ6ZN04 569 aaKnown RBP25.93■■□□□ 1.74
CTCF-203ENST00000566078 OR8H2Q8N162 312 aa25.93■■□□□ 1.74
CTCF-203ENST00000566078 OSR2Q8N2R0 312 aa25.93■■□□□ 1.74
CTCF-203ENST00000566078 Q8N402 240 aa25.93■■□□□ 1.74
CTCF-203ENST00000566078 ZNF488Q96MN9 340 aa25.93■■□□□ 1.74
CTCF-203ENST00000566078 DHRS9Q9BPW9 319 aa25.93■■□□□ 1.74
CTCF-203ENST00000566078 TM2D1Q9BX74 207 aa25.93■■□□□ 1.74
CTCF-203ENST00000566078 ABCB10Q9NRK6 738 aa25.93■■□□□ 1.74
CTCF-203ENST00000566078 RBFOX1Q9NWB1 397 aaKnown RBP25.93■■□□□ 1.74
CTCF-203ENST00000566078 ZDHHC8Q9ULC8 765 aa25.93■■□□□ 1.74
CTCF-203ENST00000566078 UPK1BO75841 260 aa25.92■■□□□ 1.74
CTCF-203ENST00000566078 SCGNO76038 276 aa25.92■■□□□ 1.74
CTCF-203ENST00000566078 IGHV1-46P01743 117 aa25.92■■□□□ 1.74
CTCF-203ENST00000566078 SRSF1Q07955 248 aaKnown RBP eCLIP25.92■■□□□ 1.744e-7■□□□□ 9.1
CTCF-203ENST00000566078 RAB12Q6IQ22 244 aa25.92■■□□□ 1.74
CTCF-203ENST00000566078 Q96M66 194 aa25.92■■□□□ 1.74
CTCF-203ENST00000566078 TLNRD1Q9H1K6 362 aa25.92■■□□□ 1.74
CTCF-203ENST00000566078 PALMDQ9NP74 551 aa25.92■■□□□ 1.74
CTCF-203ENST00000566078 ARFGEF3Q5TH69 2177 aa25.92■■□□□ 1.74
CTCF-203ENST00000566078 ABCA4P78363 2273 aa25.92■■□□□ 1.74
CTCF-203ENST00000566078 A6NLC8 198 aa25.92■■□□□ 1.74
CTCF-203ENST00000566078 M0R233 179 aa25.92■■□□□ 1.74
CTCF-203ENST00000566078 RAB27BO00194 218 aa25.92■■□□□ 1.74
CTCF-203ENST00000566078 HLA-DQB1P01920 261 aa25.92■■□□□ 1.74
CTCF-203ENST00000566078 OR56B1Q8NGI3 324 aa25.92■■□□□ 1.74
CTCF-203ENST00000566078 OR2V2Q96R30 315 aa25.92■■□□□ 1.74
CTCF-203ENST00000566078 UFSP2Q9NUQ7 469 aa25.92■■□□□ 1.74
CTCF-203ENST00000566078 F8VVB4 439 aa25.91■■□□□ 1.74
CTCF-203ENST00000566078 F8VWA3 439 aa25.91■■□□□ 1.74
CTCF-203ENST00000566078 CHRM2P08172 466 aa25.91■■□□□ 1.74
CTCF-203ENST00000566078 CPT2P23786 658 aa25.91■■□□□ 1.74
CTCF-203ENST00000566078 EFNB3Q15768 340 aa25.91■■□□□ 1.74
CTCF-203ENST00000566078 MPPED2Q15777 294 aa25.91■■□□□ 1.74
CTCF-203ENST00000566078 BAK1Q16611 211 aa25.91■■□□□ 1.74
CTCF-203ENST00000566078 RNASE12Q5GAN4 147 aaKnown RBP25.91■■□□□ 1.74
CTCF-203ENST00000566078 FBXL14Q8N1E6 418 aa25.91■■□□□ 1.74
CTCF-203ENST00000566078 CHST4Q8NCG5 386 aa25.91■■□□□ 1.74
CTCF-203ENST00000566078 OR10R2Q8NGX6 335 aa25.91■■□□□ 1.74
CTCF-203ENST00000566078 GCDHQ92947 438 aaPredicted RBP25.91■■□□□ 1.74
CTCF-203ENST00000566078 MRPS24Q96EL2 167 aaKnown RBP25.91■■□□□ 1.74
CTCF-203ENST00000566078 MEGF10Q96KG7 1140 aa25.91■■□□□ 1.74
CTCF-203ENST00000566078 KLF2Q9Y5W3 355 aaPredicted RBP25.91■■□□□ 1.74
CTCF-203ENST00000566078 PTHLHP12272 177 aa25.9■■□□□ 1.74
CTCF-203ENST00000566078 TNFSF4P23510 183 aa25.9■■□□□ 1.74
CTCF-203ENST00000566078 IFITM3Q01628 133 aa25.9■■□□□ 1.74
CTCF-203ENST00000566078 PIGYQ3MUY2 71 aa25.9■■□□□ 1.74
CTCF-203ENST00000566078 ELP2Q6IA86 826 aa25.9■■□□□ 1.74
CTCF-203ENST00000566078 C11orf53Q8IXP5 236 aa25.9■■□□□ 1.74
CTCF-203ENST00000566078 Q8NFD4 153 aa25.9■■□□□ 1.74
CTCF-203ENST00000566078 ITLN1Q8WWA0 313 aa25.9■■□□□ 1.74
CTCF-203ENST00000566078 B9A039 149 aa25.89■■□□□ 1.74
CTCF-203ENST00000566078 SOCS1O15524 211 aa25.89■■□□□ 1.74
CTCF-203ENST00000566078 CSF3P09919 207 aa25.89■■□□□ 1.74
CTCF-203ENST00000566078 GABRR1P24046 479 aa25.89■■□□□ 1.74
CTCF-203ENST00000566078 SRP9P49458 86 aaKnown RBP25.89■■□□□ 1.74
CTCF-203ENST00000566078 TNFAIP6P98066 277 aaPredicted RBP25.89■■□□□ 1.74
CTCF-203ENST00000566078 ZNF181Q2M3W8 571 aa25.89■■□□□ 1.74
CTCF-203ENST00000566078 ZNF826PQ6ZT77 177 aa25.89■■□□□ 1.74
CTCF-203ENST00000566078 FAM89BQ8N5H3 189 aa25.89■■□□□ 1.74
CTCF-203ENST00000566078 CELF2-AS1Q8N7Q2 184 aa25.89■■□□□ 1.74
CTCF-203ENST00000566078 C15orf40Q8WUR7 153 aa25.89■■□□□ 1.74
CTCF-203ENST00000566078 NUDT16L1Q9BRJ7 211 aaKnown RBP25.89■■□□□ 1.74
CTCF-203ENST00000566078 ST3GAL6Q9Y274 331 aa25.89■■□□□ 1.74
CTCF-203ENST00000566078 DYSFO75923 2080 aa25.88■■□□□ 1.73
CTCF-203ENST00000566078 C17orf100A8MU93 164 aa25.88■■□□□ 1.73
CTCF-203ENST00000566078 PRSS44E7EML9 344 aa25.88■■□□□ 1.73
CTCF-203ENST00000566078 CTDSPLO15194 276 aa25.88■■□□□ 1.73
CTCF-203ENST00000566078 TPPPO94811 219 aa25.88■■□□□ 1.73
CTCF-203ENST00000566078 PTBP3O95758 552 aaKnown RBP25.88■■□□□ 1.73
CTCF-203ENST00000566078 IL7P13232 177 aa25.88■■□□□ 1.73
CTCF-203ENST00000566078 RBM11P57052 281 aaKnown RBP25.88■■□□□ 1.73
CTCF-203ENST00000566078 FGF12P61328 243 aa25.88■■□□□ 1.73
CTCF-203ENST00000566078 SPRNQ5BIV9 151 aa25.88■■□□□ 1.73
CTCF-203ENST00000566078 MUC15Q8N387 334 aa25.88■■□□□ 1.73
CTCF-203ENST00000566078 DYNLRB1Q9NP97 96 aa25.88■■□□□ 1.73
CTCF-203ENST00000566078 C1orf123Q9NWV4 160 aa25.88■■□□□ 1.73
CTCF-203ENST00000566078 PGA5P0DJD9 388 aa25.88■■□□□ 1.73
CTCF-203ENST00000566078 SNU13P55769 128 aaKnown RBP25.88■■□□□ 1.73
CTCF-203ENST00000566078 DGCR2P98153 550 aa25.88■■□□□ 1.73
CTCF-203ENST00000566078 MST1LQ2TV78 715 aa25.88■■□□□ 1.73
CTCF-203ENST00000566078 EMG1Q92979 244 aaKnown RBP25.88■■□□□ 1.73
CTCF-203ENST00000566078 DIRC2Q96SL1 478 aa25.88■■□□□ 1.73
CTCF-203ENST00000566078 ZMAT3Q9HA38 289 aaKnown RBP25.88■■□□□ 1.73
CTCF-203ENST00000566078 IL19Q9UHD0 177 aa25.88■■□□□ 1.73
CTCF-203ENST00000566078 TANC2Q9HCD6 1990 aa25.87■■□□□ 1.73
CTCF-203ENST00000566078 PRKACAP17612 351 aa25.87■■□□□ 1.73
CTCF-203ENST00000566078 DAZAP2Q15038 168 aaPredicted RBP25.87■■□□□ 1.73
CTCF-203ENST00000566078 TAF9Q16594 264 aa25.87■■□□□ 1.73
CTCF-203ENST00000566078 WDR82Q6UXN9 313 aa25.87■■□□□ 1.73
CTCF-203ENST00000566078 RTN4RL2Q86UN3 420 aa25.87■■□□□ 1.73
CTCF-203ENST00000566078 Q8IYB0 196 aa25.87■■□□□ 1.73
CTCF-203ENST00000566078 FBXW5Q969U6 566 aa25.87■■□□□ 1.73
CTCF-203ENST00000566078 RAB3CQ96E17 227 aa25.87■■□□□ 1.73
CTCF-203ENST00000566078 AUNIPQ9H7T9 357 aa25.87■■□□□ 1.73
CTCF-203ENST00000566078 hCG_1807616A0A1W2PRN6 198 aa25.86■■□□□ 1.73
CTCF-203ENST00000566078 C3orf80F5H4A9 247 aa25.86■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms