RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 RDH10Q8IZV5 341 aa16.99■□□□□ 0.31
CLN3-219ENST00000565778 PRSS35Q8N3Z0 413 aa16.99■□□□□ 0.31
CLN3-219ENST00000565778 CBR4Q8N4T8 237 aa16.99■□□□□ 0.31
CLN3-219ENST00000565778 SLITRK2Q9H156 845 aa16.99■□□□□ 0.31
CLN3-219ENST00000565778 MMP24Q9Y5R2 645 aa16.99■□□□□ 0.31
CLN3-219ENST00000565778 MEIOCA2RUB1 952 aa16.98■□□□□ 0.31
CLN3-219ENST00000565778 GATBO75879 557 aaKnown RBP16.98■□□□□ 0.31
CLN3-219ENST00000565778 INMTO95050 263 aa16.98■□□□□ 0.31
CLN3-219ENST00000565778 PAHP00439 452 aa16.98■□□□□ 0.31
CLN3-219ENST00000565778 KNG1P01042 644 aa16.98■□□□□ 0.31
CLN3-219ENST00000565778 RPL31P62899 125 aaKnown RBP16.98■□□□□ 0.31
CLN3-219ENST00000565778 IL24Q13007 206 aa16.98■□□□□ 0.31
CLN3-219ENST00000565778 PNKDQ8N490 385 aa16.98■□□□□ 0.31
CLN3-219ENST00000565778 OR4M1Q8NGD0 313 aa16.98■□□□□ 0.31
CLN3-219ENST00000565778 OR5D13Q8NGL4 314 aa16.98■□□□□ 0.31
CLN3-219ENST00000565778 PKIBQ9C010 78 aa16.98■□□□□ 0.31
CLN3-219ENST00000565778 C19orf12Q9NSK7 152 aa16.98■□□□□ 0.31
CLN3-219ENST00000565778 SF3B6Q9Y3B4 125 aaKnown RBP16.98■□□□□ 0.31
CLN3-219ENST00000565778 GMPPBQ9Y5P6 360 aa16.98■□□□□ 0.31
CLN3-219ENST00000565778 A0A1W2PPH5 198 aa16.97■□□□□ 0.31
CLN3-219ENST00000565778 BTBD17A6NE02 478 aa16.97■□□□□ 0.31
CLN3-219ENST00000565778 SNTNA6NMZ2 147 aa16.97■□□□□ 0.31
CLN3-219ENST00000565778 GPR137BO60478 399 aa16.97■□□□□ 0.31
CLN3-219ENST00000565778 UBCP0CG48 685 aaKnown RBP16.97■□□□□ 0.31
CLN3-219ENST00000565778 KIR3DL2P43630 455 aa16.97■□□□□ 0.31
CLN3-219ENST00000565778 ISL1P61371 349 aa16.97■□□□□ 0.31
CLN3-219ENST00000565778 ACTC1P68032 377 aa16.97■□□□□ 0.31
CLN3-219ENST00000565778 ACTA1P68133 377 aa16.97■□□□□ 0.31
CLN3-219ENST00000565778 RELBQ01201 579 aa16.97■□□□□ 0.31
CLN3-219ENST00000565778 ACSM1Q08AH1 577 aa16.97■□□□□ 0.31
CLN3-219ENST00000565778 TMEM244Q5VVB8 128 aa16.97■□□□□ 0.31
CLN3-219ENST00000565778 TMEM200BQ69YZ2 307 aa16.97■□□□□ 0.31
CLN3-219ENST00000565778 BORCS8Q96FH0 119 aa16.97■□□□□ 0.31
CLN3-219ENST00000565778 HES4Q9HCC6 221 aa16.97■□□□□ 0.31
CLN3-219ENST00000565778 AASSQ9UDR5 926 aa16.97■□□□□ 0.31
CLN3-219ENST00000565778 LOC107986453A0A1B0GWG9 222 aa16.96■□□□□ 0.31
CLN3-219ENST00000565778 J3QLW9 94 aa16.96■□□□□ 0.31
CLN3-219ENST00000565778 EBAG9O00559 213 aa16.96■□□□□ 0.31
CLN3-219ENST00000565778 NDUFA7O95182 113 aa16.96■□□□□ 0.31
CLN3-219ENST00000565778 TK1P04183 234 aa16.96■□□□□ 0.31
CLN3-219ENST00000565778 ZNF19P17023 458 aa16.96■□□□□ 0.31
CLN3-219ENST00000565778 SAA4P35542 130 aa16.96■□□□□ 0.31
CLN3-219ENST00000565778 OR12D2P58182 307 aa16.96■□□□□ 0.31
CLN3-219ENST00000565778 RPL15P61313 204 aaKnown RBP16.96■□□□□ 0.31
CLN3-219ENST00000565778 ERVK11-1P61568 191 aa16.96■□□□□ 0.31
CLN3-219ENST00000565778 OR2G2Q8NGZ5 317 aa16.96■□□□□ 0.31
CLN3-219ENST00000565778 SLAMF9Q96A28 289 aa16.96■□□□□ 0.31
CLN3-219ENST00000565778 C10orf35Q96D05 121 aa16.96■□□□□ 0.31
CLN3-219ENST00000565778 CEP19Q96LK0 163 aa16.96■□□□□ 0.31
CLN3-219ENST00000565778 C9orf16Q9BUW7 83 aa16.96■□□□□ 0.31
CLN3-219ENST00000565778 MTCH1Q9NZJ7 389 aa16.96■□□□□ 0.31
CLN3-219ENST00000565778 CLPSL1A2RUU4 121 aa16.95■□□□□ 0.3
CLN3-219ENST00000565778 SLC16A6O15403 523 aa16.95■□□□□ 0.3
CLN3-219ENST00000565778 ANGPTL7O43827 346 aa16.95■□□□□ 0.3
CLN3-219ENST00000565778 HTR1AP08908 422 aa16.95■□□□□ 0.3
CLN3-219ENST00000565778 CNN3Q15417 329 aaKnown RBP16.95■□□□□ 0.3
CLN3-219ENST00000565778 OLFML2AQ68BL7 652 aa16.95■□□□□ 0.3
CLN3-219ENST00000565778 GDPGP1Q6ZNW5 385 aa16.95■□□□□ 0.3
CLN3-219ENST00000565778 C17orf107Q6ZR85 190 aa16.95■□□□□ 0.3
CLN3-219ENST00000565778 SLC25A26Q70HW3 274 aa16.95■□□□□ 0.3
CLN3-219ENST00000565778 EGFL6Q8IUX8 553 aa16.95■□□□□ 0.3
CLN3-219ENST00000565778 MKXQ8IYA7 352 aa16.95■□□□□ 0.3
CLN3-219ENST00000565778 ACBD7Q8N6N7 88 aa16.95■□□□□ 0.3
CLN3-219ENST00000565778 PP6455Q8WZ26 134 aa16.95■□□□□ 0.3
CLN3-219ENST00000565778 FGGYQ96C11 551 aa16.95■□□□□ 0.3
CLN3-219ENST00000565778 MBOAT4Q96T53 435 aa16.95■□□□□ 0.3
CLN3-219ENST00000565778 CHST5Q9GZS9 411 aa16.95■□□□□ 0.3
CLN3-219ENST00000565778 ZNF696Q9H7X3 374 aa16.95■□□□□ 0.3
CLN3-219ENST00000565778 HEXA-AS1Q9H8Q6 139 aa16.95■□□□□ 0.3
CLN3-219ENST00000565778 S100A14Q9HCY8 104 aa16.95■□□□□ 0.3
CLN3-219ENST00000565778 FRRS1LQ9P0K9 344 aa16.95■□□□□ 0.3
CLN3-219ENST00000565778 ZNRD1Q9P1U0 126 aa16.95■□□□□ 0.3
CLN3-219ENST00000565778 IGKV1-27A0A075B6S5 117 aa16.94■□□□□ 0.3
CLN3-219ENST00000565778 hCG_1809904A0A1W2PP81 198 aa16.94■□□□□ 0.3
CLN3-219ENST00000565778 A0A1W2PPE2 198 aa16.94■□□□□ 0.3
CLN3-219ENST00000565778 A0A1W2PR64 198 aa16.94■□□□□ 0.3
CLN3-219ENST00000565778 A0A1W2PRV1 198 aa16.94■□□□□ 0.3
CLN3-219ENST00000565778 E9PQ18 207 aa16.94■□□□□ 0.3
CLN3-219ENST00000565778 J3QRE1 110 aa16.94■□□□□ 0.3
CLN3-219ENST00000565778 CHRM2P08172 466 aa16.94■□□□□ 0.3
CLN3-219ENST00000565778 ATP1B3P54709 279 aa16.94■□□□□ 0.3
CLN3-219ENST00000565778 COL10A1Q03692 680 aa16.94■□□□□ 0.3
CLN3-219ENST00000565778 TAF9Q16594 264 aa16.94■□□□□ 0.3
CLN3-219ENST00000565778 ZBTB49Q6ZSB9 765 aa16.94■□□□□ 0.3
CLN3-219ENST00000565778 ASCC1Q8N9N2 400 aaKnown RBP16.94■□□□□ 0.3
CLN3-219ENST00000565778 RNF166Q96A37 237 aaPredicted RBP16.94■□□□□ 0.3
CLN3-219ENST00000565778 MRPL48Q96GC5 212 aaKnown RBP16.94■□□□□ 0.3
CLN3-219ENST00000565778 SLC29A1Q99808 456 aa16.94■□□□□ 0.3
CLN3-219ENST00000565778 FAM234AQ9H0X4 552 aa16.94■□□□□ 0.3
CLN3-219ENST00000565778 EXOGQ9Y2C4 368 aaKnown RBP16.94■□□□□ 0.3
CLN3-219ENST00000565778 F8VVB4 439 aa16.93■□□□□ 0.3
CLN3-219ENST00000565778 F8VWA3 439 aa16.93■□□□□ 0.3
CLN3-219ENST00000565778 K7N7A8 449 aa16.93■□□□□ 0.3
CLN3-219ENST00000565778 ZNF20P17024 532 aa16.93■□□□□ 0.3
CLN3-219ENST00000565778 RBP2P50120 134 aa16.93■□□□□ 0.3
CLN3-219ENST00000565778 PRR31Q5SQ13 230 aa16.93■□□□□ 0.3
CLN3-219ENST00000565778 HCP5Q6MZN7 132 aa16.93■□□□□ 0.3
CLN3-219ENST00000565778 FDX2Q6P4F2 183 aa16.93■□□□□ 0.3
CLN3-219ENST00000565778 LHFPL3Q86UP9 236 aa16.93■□□□□ 0.3
CLN3-219ENST00000565778 LGALS12Q96DT0 336 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms