RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 ZNF273Q14593 569 aa13.88□□□□□ -0.19
CLN3-216ENST00000565316 DNAL1Q4LDG9 190 aa13.88□□□□□ -0.19
CLN3-216ENST00000565316 BCL2L15Q5TBC7 163 aa13.88□□□□□ -0.19
CLN3-216ENST00000565316 ASRGL1Q7L266 308 aa13.88□□□□□ -0.19
CLN3-216ENST00000565316 SLC35F2Q8IXU6 374 aa13.88□□□□□ -0.19
CLN3-216ENST00000565316 OR4M1Q8NGD0 313 aa13.88□□□□□ -0.19
CLN3-216ENST00000565316 OR2T6Q8NHC8 308 aa13.88□□□□□ -0.19
CLN3-216ENST00000565316 PRRG3Q9BZD7 231 aa13.88□□□□□ -0.19
CLN3-216ENST00000565316 CLN6Q9NWW5 311 aa13.88□□□□□ -0.19
CLN3-216ENST00000565316 MRM2Q9UI43 246 aaKnown RBP13.88□□□□□ -0.19
CLN3-216ENST00000565316 FOXJ3Q9UPW0 622 aa13.88□□□□□ -0.19
CLN3-216ENST00000565316 SNX5Q9Y5X3 404 aa13.88□□□□□ -0.19
CLN3-216ENST00000565316 TET2Q6N021 2002 aaPredicted RBP13.87□□□□□ -0.19
CLN3-216ENST00000565316 DNAH3Q8TD57 4116 aa13.87□□□□□ -0.19
CLN3-216ENST00000565316 C17orf98A8MV24 154 aa13.87□□□□□ -0.19
CLN3-216ENST00000565316 K7N7A8 449 aa13.87□□□□□ -0.19
CLN3-216ENST00000565316 MAGEB4O15481 346 aaPredicted RBP13.87□□□□□ -0.19
CLN3-216ENST00000565316 GYG2O15488 501 aa13.87□□□□□ -0.19
CLN3-216ENST00000565316 OPN1MWP04001 364 aa13.87□□□□□ -0.19
CLN3-216ENST00000565316 OPN1MW2P0DN77 364 aa13.87□□□□□ -0.19
CLN3-216ENST00000565316 OPN1MW3P0DN78 364 aa13.87□□□□□ -0.19
CLN3-216ENST00000565316 ERVFRD-1P60508 538 aa13.87□□□□□ -0.19
CLN3-216ENST00000565316 SLX4IPQ5VYV7 408 aa13.87□□□□□ -0.19
CLN3-216ENST00000565316 NXNL2Q5VZ03 156 aa13.87□□□□□ -0.19
CLN3-216ENST00000565316 KLHDC1Q8N7A1 406 aa13.87□□□□□ -0.19
CLN3-216ENST00000565316 DTX3Q8N9I9 347 aa13.87□□□□□ -0.19
CLN3-216ENST00000565316 TMEM163Q8TC26 289 aa13.87□□□□□ -0.19
CLN3-216ENST00000565316 SLC7A6OSQ96CW6 309 aaPredicted RBP13.87□□□□□ -0.19
CLN3-216ENST00000565316 PKIBQ9C010 78 aa13.87□□□□□ -0.19
CLN3-216ENST00000565316 NPFFR1Q9GZQ6 430 aa13.87□□□□□ -0.19
CLN3-216ENST00000565316 GTF2A1LQ9UNN4 478 aa13.87□□□□□ -0.19
CLN3-216ENST00000565316 ZAR1LA6NP61 321 aa13.86□□□□□ -0.19
CLN3-216ENST00000565316 ZNF670-ZNF695F2Z2N8 137 aa13.86□□□□□ -0.19
CLN3-216ENST00000565316 M0R129 80 aa13.86□□□□□ -0.19
CLN3-216ENST00000565316 COX7A1P24310 79 aa13.86□□□□□ -0.19
CLN3-216ENST00000565316 EPHA2P29317 976 aa13.86□□□□□ -0.19
CLN3-216ENST00000565316 LGALS4P56470 323 aa13.86□□□□□ -0.19
CLN3-216ENST00000565316 IL24Q13007 206 aa13.86□□□□□ -0.19
CLN3-216ENST00000565316 KPRPQ5T749 579 aaPredicted RBP13.86□□□□□ -0.19
CLN3-216ENST00000565316 C12orf73Q69YU5 71 aa13.86□□□□□ -0.19
CLN3-216ENST00000565316 PLEKHG7Q6ZR37 379 aa13.86□□□□□ -0.19
CLN3-216ENST00000565316 TCEANCQ8N8B7 351 aa13.86□□□□□ -0.19
CLN3-216ENST00000565316 CDCA4Q9BXL8 241 aa13.86□□□□□ -0.19
CLN3-216ENST00000565316 H2AFY2Q9P0M6 372 aaPredicted RBP13.86□□□□□ -0.19
CLN3-216ENST00000565316 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.86□□□□□ -0.19
CLN3-216ENST00000565316 A6NIN4 97 aa13.85□□□□□ -0.19
CLN3-216ENST00000565316 ODF3BA8MYP8 253 aa13.85□□□□□ -0.19
CLN3-216ENST00000565316 MITFO75030 526 aaPredicted RBP13.85□□□□□ -0.19
CLN3-216ENST00000565316 ZNF737O75373 536 aa13.85□□□□□ -0.19
CLN3-216ENST00000565316 RBP4P02753 201 aa13.85□□□□□ -0.19
CLN3-216ENST00000565316 BEAN1Q3B7T3 259 aa13.85□□□□□ -0.19
CLN3-216ENST00000565316 LHFPL4Q7Z7J7 247 aa13.85□□□□□ -0.19
CLN3-216ENST00000565316 ANGPTL5Q86XS5 388 aa13.85□□□□□ -0.19
CLN3-216ENST00000565316 DYNAPQ8N1N2 210 aa13.85□□□□□ -0.19
CLN3-216ENST00000565316 Q8N2B8 174 aa13.85□□□□□ -0.19
CLN3-216ENST00000565316 KRT84Q9NSB2 600 aa13.85□□□□□ -0.19
CLN3-216ENST00000565316 OR14J1Q9UGF5 321 aa13.85□□□□□ -0.19
CLN3-216ENST00000565316 SLC22A13Q9Y226 551 aa13.85□□□□□ -0.19
CLN3-216ENST00000565316 TBL2Q9Y4P3 447 aaKnown RBP13.85□□□□□ -0.19
CLN3-216ENST00000565316 NOTCH3Q9UM47 2321 aa13.84□□□□□ -0.19
CLN3-216ENST00000565316 DNAJC8O75937 253 aaPredicted RBP13.84□□□□□ -0.19
CLN3-216ENST00000565316 ZNF728P0DKX0 622 aa13.84□□□□□ -0.19
CLN3-216ENST00000565316 COL10A1Q03692 680 aa13.84□□□□□ -0.19
CLN3-216ENST00000565316 ATP6AP1Q15904 470 aa13.84□□□□□ -0.19
CLN3-216ENST00000565316 SAMD5Q5TGI4 173 aa13.84□□□□□ -0.19
CLN3-216ENST00000565316 KDM4DQ6B0I6 523 aa13.84□□□□□ -0.19
CLN3-216ENST00000565316 ZNF782Q6ZMW2 699 aaPredicted RBP13.84□□□□□ -0.19
CLN3-216ENST00000565316 CATSPERDQ86XM0 798 aa13.84□□□□□ -0.19
CLN3-216ENST00000565316 GID4Q8IVV7 300 aa13.84□□□□□ -0.19
CLN3-216ENST00000565316 BATF2Q8N1L9 274 aa13.84□□□□□ -0.19
CLN3-216ENST00000565316 OR11H6Q8NGC7 330 aa13.84□□□□□ -0.19
CLN3-216ENST00000565316 ZNF702PQ9H963 129 aa13.84□□□□□ -0.19
CLN3-216ENST00000565316 MTCH1Q9NZJ7 389 aa13.84□□□□□ -0.19
CLN3-216ENST00000565316 A6NDX4 124 aa13.83□□□□□ -0.2
CLN3-216ENST00000565316 F8VVB4 439 aa13.83□□□□□ -0.2
CLN3-216ENST00000565316 F8VWA3 439 aa13.83□□□□□ -0.2
CLN3-216ENST00000565316 G3V4G9 280 aa13.83□□□□□ -0.2
CLN3-216ENST00000565316 CHRM2P08172 466 aa13.83□□□□□ -0.2
CLN3-216ENST00000565316 PIPP12273 146 aaPredicted RBP13.83□□□□□ -0.2
CLN3-216ENST00000565316 UBE2V2Q15819 145 aa13.83□□□□□ -0.2
CLN3-216ENST00000565316 LDLRAD2Q5SZI1 272 aa13.83□□□□□ -0.2
CLN3-216ENST00000565316 ZNF626Q68DY1 528 aa13.83□□□□□ -0.2
CLN3-216ENST00000565316 HIST2H2BDQ6DRA6 164 aa13.83□□□□□ -0.2
CLN3-216ENST00000565316 CCBE1Q6UXH8 406 aaPredicted RBP13.83□□□□□ -0.2
CLN3-216ENST00000565316 SSX6Q7RTT6 188 aa13.83□□□□□ -0.2
CLN3-216ENST00000565316 C11orf44Q8N8P7 122 aa13.83□□□□□ -0.2
CLN3-216ENST00000565316 OR13D1Q8NGV5 346 aa13.83□□□□□ -0.2
CLN3-216ENST00000565316 WIPF2Q8TF74 440 aaPredicted RBP13.83□□□□□ -0.2
CLN3-216ENST00000565316 FOXRED1Q96CU9 486 aaPredicted RBP13.83□□□□□ -0.2
CLN3-216ENST00000565316 MALSU1Q96EH3 234 aa13.83□□□□□ -0.2
CLN3-216ENST00000565316 IL4I1Q96RQ9 567 aa13.83□□□□□ -0.2
CLN3-216ENST00000565316 SEBOXQ9HB31 216 aaPredicted RBP13.83□□□□□ -0.2
CLN3-216ENST00000565316 SERTAD4Q9NUC0 356 aa13.83□□□□□ -0.2
CLN3-216ENST00000565316 WARS2Q9UGM6 360 aaKnown RBP13.83□□□□□ -0.2
CLN3-216ENST00000565316 SLC7A11Q9UPY5 501 aa13.83□□□□□ -0.2
CLN3-216ENST00000565316 TCF19Q9Y242 345 aa13.83□□□□□ -0.2
CLN3-216ENST00000565316 IGKV1-27A0A075B6S5 117 aa13.82□□□□□ -0.2
CLN3-216ENST00000565316 G3V2T6 193 aa13.82□□□□□ -0.2
CLN3-216ENST00000565316 KRT8P05787 483 aa13.82□□□□□ -0.2
CLN3-216ENST00000565316 VSIG10L2P0DP72 767 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms