RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 PELI1Q96FA3 418 aa15.08■□□□□ 0
CLN3-214ENST00000565140 CHIAQ9BZP6 476 aa15.08■□□□□ 0
CLN3-214ENST00000565140 PKIBQ9C010 78 aa15.08■□□□□ 0
CLN3-214ENST00000565140 CHST5Q9GZS9 411 aa15.08■□□□□ 0
CLN3-214ENST00000565140 PCDHGB1Q9Y5G3 927 aa15.08■□□□□ 0
CLN3-214ENST00000565140 A0A1W2PQ09 198 aa15.07■□□□□ 0
CLN3-214ENST00000565140 SNTNA6NMZ2 147 aa15.07■□□□□ 0
CLN3-214ENST00000565140 FUT6P51993 359 aa15.07■□□□□ 0
CLN3-214ENST00000565140 CAPZA1P52907 286 aa15.07■□□□□ 0
CLN3-214ENST00000565140 TMEM244Q5VVB8 128 aa15.07■□□□□ 0
CLN3-214ENST00000565140 C1orf122Q6ZSJ8 110 aa15.07■□□□□ 0
CLN3-214ENST00000565140 OR10AC1Q8NH08 325 aa15.07■□□□□ 0
CLN3-214ENST00000565140 C4orf36Q96KX1 117 aa15.07■□□□□ 0
CLN3-214ENST00000565140 ZNF649Q9BS31 505 aa15.07■□□□□ 0
CLN3-214ENST00000565140 ISG20L2Q9H9L3 353 aaKnown RBP15.07■□□□□ 0
CLN3-214ENST00000565140 C19orf12Q9NSK7 152 aa15.07■□□□□ 0
CLN3-214ENST00000565140 MTCH1Q9NZJ7 389 aa15.07■□□□□ 0
CLN3-214ENST00000565140 OR14J1Q9UGF5 321 aa15.07■□□□□ 0
CLN3-214ENST00000565140 MGAM2Q2M2H8 2515 aa15.07■□□□□ 0
CLN3-214ENST00000565140 IGKV1-9A0A0C4DH69 117 aa15.06■□□□□ 0
CLN3-214ENST00000565140 A0A1W2PRD5 423 aa15.06■□□□□ 0
CLN3-214ENST00000565140 A0A1W2PRF3 423 aa15.06■□□□□ 0
CLN3-214ENST00000565140 A0A1W2PRM7 423 aa15.06■□□□□ 0
CLN3-214ENST00000565140 FAM181BA6NEQ2 426 aa15.06■□□□□ 0
CLN3-214ENST00000565140 M0R1W7 72 aa15.06■□□□□ 0
CLN3-214ENST00000565140 MPZL2O60487 215 aa15.06■□□□□ 0
CLN3-214ENST00000565140 GATBO75879 557 aaKnown RBP15.06■□□□□ 0
CLN3-214ENST00000565140 INMTO95050 263 aa15.06■□□□□ 0
CLN3-214ENST00000565140 SERPINA3P01011 423 aa15.06■□□□□ 0
CLN3-214ENST00000565140 ISG15P05161 165 aa15.06■□□□□ 0
CLN3-214ENST00000565140 HTR1AP08908 422 aa15.06■□□□□ 0
CLN3-214ENST00000565140 OMGP23515 440 aa15.06■□□□□ 0
CLN3-214ENST00000565140 GALEQ14376 348 aa15.06■□□□□ 0
CLN3-214ENST00000565140 FAM185AQ8N0U4 392 aa15.06■□□□□ 0
CLN3-214ENST00000565140 PNKDQ8N490 385 aa15.06■□□□□ 0
CLN3-214ENST00000565140 ZNF561Q8N587 486 aa15.06■□□□□ 0
CLN3-214ENST00000565140 OR51A4Q8NGJ6 313 aa15.06■□□□□ 0
CLN3-214ENST00000565140 APH1BQ8WW43 257 aa15.06■□□□□ 0
CLN3-214ENST00000565140 SLAMF9Q96A28 289 aa15.06■□□□□ 0
CLN3-214ENST00000565140 FGGYQ96C11 551 aa15.06■□□□□ 0
CLN3-214ENST00000565140 C10orf35Q96D05 121 aa15.06■□□□□ 0
CLN3-214ENST00000565140 Q96MT0 163 aa15.06■□□□□ 0
CLN3-214ENST00000565140 ALG8Q9BVK2 526 aa15.06■□□□□ 0
CLN3-214ENST00000565140 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.06■□□□□ 0
CLN3-214ENST00000565140 TRRAPQ9Y4A5 3859 aa15.06■□□□□ 0
CLN3-214ENST00000565140 TRBV23-1A0A0A0MS06 115 aa15.05■□□□□ -0
CLN3-214ENST00000565140 OR4C45A6NMZ5 311 aa15.05■□□□□ -0
CLN3-214ENST00000565140 SLC1A7O00341 560 aa15.05■□□□□ -0
CLN3-214ENST00000565140 IGHA1P01876 353 aa15.05■□□□□ -0
CLN3-214ENST00000565140 CCR9P51686 369 aa15.05■□□□□ -0
CLN3-214ENST00000565140 TMEM200BQ69YZ2 307 aa15.05■□□□□ -0
CLN3-214ENST00000565140 FIP1L1Q6UN15 594 aaKnown RBP15.05■□□□□ -0
CLN3-214ENST00000565140 SLC25A26Q70HW3 274 aa15.05■□□□□ -0
CLN3-214ENST00000565140 TMEM86BQ8N661 226 aa15.05■□□□□ -0
CLN3-214ENST00000565140 OR4M1Q8NGD0 313 aa15.05■□□□□ -0
CLN3-214ENST00000565140 PP6455Q8WZ26 134 aa15.05■□□□□ -0
CLN3-214ENST00000565140 ZNF747Q9BV97 191 aa15.05■□□□□ -0
CLN3-214ENST00000565140 UNKLQ9H9P5 680 aaKnown RBP15.05■□□□□ -0
CLN3-214ENST00000565140 E9PI62 339 aa15.04■□□□□ -0
CLN3-214ENST00000565140 NPFFO15130 113 aa15.04■□□□□ -0
CLN3-214ENST00000565140 KNG1P01042 644 aa15.04■□□□□ -0
CLN3-214ENST00000565140 IGHV4-59P01825 116 aa15.04■□□□□ -0
CLN3-214ENST00000565140 IER3P46695 156 aa15.04■□□□□ -0
CLN3-214ENST00000565140 ACTA2P62736 377 aa15.04■□□□□ -0
CLN3-214ENST00000565140 ACTG2P63267 376 aa15.04■□□□□ -0
CLN3-214ENST00000565140 ALKBH1Q13686 389 aaKnown RBP15.04■□□□□ -0
CLN3-214ENST00000565140 CNN3Q15417 329 aaKnown RBP15.04■□□□□ -0
CLN3-214ENST00000565140 SMN1Q16637 294 aaKnown RBP15.04■□□□□ -0
CLN3-214ENST00000565140 HCP5Q6MZN7 132 aa15.04■□□□□ -0
CLN3-214ENST00000565140 UTS2BQ765I0 119 aa15.04■□□□□ -0
CLN3-214ENST00000565140 LDLRAD3Q86YD5 345 aa15.04■□□□□ -0
CLN3-214ENST00000565140 OR52I1Q8NGK6 324 aa15.04■□□□□ -0
CLN3-214ENST00000565140 SSMEM1Q8WWF3 244 aa15.04■□□□□ -0
CLN3-214ENST00000565140 BORCS8Q96FH0 119 aa15.04■□□□□ -0
CLN3-214ENST00000565140 CEP19Q96LK0 163 aa15.04■□□□□ -0
CLN3-214ENST00000565140 METTL8Q9H825 291 aaKnown RBP15.04■□□□□ -0
CLN3-214ENST00000565140 MRPS18AQ9NVS2 196 aaKnown RBP15.04■□□□□ -0
CLN3-214ENST00000565140 ERVK13-1Q9NX77 482 aa15.04■□□□□ -0
CLN3-214ENST00000565140 SMPD3Q9NY59 655 aaPredicted RBP15.04■□□□□ -0
CLN3-214ENST00000565140 POMT1Q9Y6A1 747 aa15.04■□□□□ -0
CLN3-214ENST00000565140 KIAA2026Q5HYC2 2103 aa15.04■□□□□ -0
CLN3-214ENST00000565140 WBP4O75554 376 aaKnown RBP15.03■□□□□ -0
CLN3-214ENST00000565140 FADS2O95864 444 aaKnown RBP15.03■□□□□ -0
CLN3-214ENST00000565140 TK1P04183 234 aa15.03■□□□□ -0
CLN3-214ENST00000565140 ATF1P18846 271 aa15.03■□□□□ -0
CLN3-214ENST00000565140 MDKP21741 143 aaPredicted RBP15.03■□□□□ -0
CLN3-214ENST00000565140 NPBWR2P48146 333 aa15.03■□□□□ -0
CLN3-214ENST00000565140 UBE2E1P51965 193 aa15.03■□□□□ -0
CLN3-214ENST00000565140 RPL31P62899 125 aaKnown RBP15.03■□□□□ -0
CLN3-214ENST00000565140 RELBQ01201 579 aa15.03■□□□□ -0
CLN3-214ENST00000565140 GUCA2AQ02747 115 aa15.03■□□□□ -0
CLN3-214ENST00000565140 COL10A1Q03692 680 aa15.03■□□□□ -0
CLN3-214ENST00000565140 RAB40BQ12829 278 aa15.03■□□□□ -0
CLN3-214ENST00000565140 LRRC36Q1X8D7 754 aa15.03■□□□□ -0
CLN3-214ENST00000565140 RNF144BQ7Z419 303 aa15.03■□□□□ -0
CLN3-214ENST00000565140 C11orf42Q8N5U0 333 aa15.03■□□□□ -0
CLN3-214ENST00000565140 DNAAF1Q8NEP3 725 aa15.03■□□□□ -0
CLN3-214ENST00000565140 TBC1D15Q8TC07 691 aa15.03■□□□□ -0
CLN3-214ENST00000565140 STMN2Q93045 179 aa15.03■□□□□ -0
CLN3-214ENST00000565140 IL36RNQ9UBH0 155 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms