RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 ATG12O94817 140 aa11.74□□□□□ -0.53
CLK3-215ENST00000564353 SNAPINO95295 136 aa11.74□□□□□ -0.53
CLK3-215ENST00000564353 DUX4L2P0CJ85 424 aa11.74□□□□□ -0.53
CLK3-215ENST00000564353 DUX4L3P0CJ86 424 aa11.74□□□□□ -0.53
CLK3-215ENST00000564353 DUX4L4P0CJ87 422 aa11.74□□□□□ -0.53
CLK3-215ENST00000564353 DUX4L5P0CJ88 424 aa11.74□□□□□ -0.53
CLK3-215ENST00000564353 DUX4L6P0CJ89 424 aa11.74□□□□□ -0.53
CLK3-215ENST00000564353 DUX4L7P0CJ90 424 aa11.74□□□□□ -0.53
CLK3-215ENST00000564353 PTAFRP25105 342 aa11.74□□□□□ -0.53
CLK3-215ENST00000564353 MPZP25189 248 aa11.74□□□□□ -0.53
CLK3-215ENST00000564353 RBMXP38159 391 aaKnown RBP11.74□□□□□ -0.53
CLK3-215ENST00000564353 HTR5AP47898 357 aa11.74□□□□□ -0.53
CLK3-215ENST00000564353 TCEAL6Q6IPX3 200 aa11.74□□□□□ -0.53
CLK3-215ENST00000564353 OPN5Q6U736 354 aa11.74□□□□□ -0.53
CLK3-215ENST00000564353 SULF2Q8IWU5 870 aa11.74□□□□□ -0.53
CLK3-215ENST00000564353 EIF4E3Q8N5X7 224 aaKnown RBP11.74□□□□□ -0.53
CLK3-215ENST00000564353 OR5L1Q8NGL2 311 aa11.74□□□□□ -0.53
CLK3-215ENST00000564353 ASB13Q8WXK3 278 aa11.74□□□□□ -0.53
CLK3-215ENST00000564353 HAS2Q92819 552 aa11.74□□□□□ -0.53
CLK3-215ENST00000564353 TCEAL3Q969E4 200 aa11.74□□□□□ -0.53
CLK3-215ENST00000564353 DUX4Q9UBX2 424 aa11.74□□□□□ -0.53
CLK3-215ENST00000564353 A0A096LPE4 126 aa11.74□□□□□ -0.53
CLK3-215ENST00000564353 A0A1W2PPZ6 126 aa11.74□□□□□ -0.53
CLK3-215ENST00000564353 NXPH3O95157 252 aa11.74□□□□□ -0.53
CLK3-215ENST00000564353 TBPP20226 339 aa11.74□□□□□ -0.53
CLK3-215ENST00000564353 CPT2P23786 658 aa11.74□□□□□ -0.53
CLK3-215ENST00000564353 SPEM2Q0P670 501 aa11.74□□□□□ -0.53
CLK3-215ENST00000564353 RBM39Q14498 530 aaKnown RBP11.74□□□□□ -0.53
CLK3-215ENST00000564353 SWI5Q1ZZU3 235 aa11.74□□□□□ -0.53
CLK3-215ENST00000564353 LHFPL1Q86WI0 220 aa11.74□□□□□ -0.53
CLK3-215ENST00000564353 PIGCQ92535 297 aa11.74□□□□□ -0.53
CLK3-215ENST00000564353 CLDN23Q96B33 292 aa11.74□□□□□ -0.53
CLK3-215ENST00000564353 IMMP1LQ96LU5 166 aa11.74□□□□□ -0.53
CLK3-215ENST00000564353 BOD1L1Q8NFC6 3051 aa11.74□□□□□ -0.53
CLK3-215ENST00000564353 MED6O75586 246 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 OR5H8P0DN80 308 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 PRF1P14222 555 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 NPBWR1P48145 328 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 DSCR4P56555 118 aaPredicted RBP11.73□□□□□ -0.53
CLK3-215ENST00000564353 IGFBP7Q16270 282 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 H3F3CQ6NXT2 135 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 RPUSD3Q6P087 351 aaKnown RBP11.73□□□□□ -0.53
CLK3-215ENST00000564353 PRSS54Q6PEW0 395 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 ZFP82Q8N141 532 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 FBXL14Q8N1E6 418 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 FAM89BQ8N5H3 189 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 PIGMQ9H3S5 423 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 P4HTMQ9NXG6 502 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 FBLN5Q9UBX5 448 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 DSPP15924 2871 aaKnown RBP11.73□□□□□ -0.53
CLK3-215ENST00000564353 DOCK7Q96N67 2140 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 IGKV1-12A0A0C4DH73 117 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 FIGNL2A6NMB9 653 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 C9J4A7 227 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 IFNA2P01563 188 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 IGKV1D-12P01611 117 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 LPAR6P43657 344 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 PCP4P48539 62 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 GSK3AP49840 483 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 PIGPP57054 158 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 CARD18P57730 90 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 LSM6P62312 80 aaKnown RBP11.73□□□□□ -0.53
CLK3-215ENST00000564353 POC1AQ8NBT0 407 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 ADPRHL1Q8NDY3 354 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 EMG1Q92979 244 aaKnown RBP11.73□□□□□ -0.53
CLK3-215ENST00000564353 SPTSSAQ969W0 71 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 C2orf50Q96LR7 162 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 OR51B6Q9H340 312 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 RAB18Q9NP72 206 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 ZNF629Q9UEG4 869 aaPredicted RBP11.73□□□□□ -0.53
CLK3-215ENST00000564353 PILRBQ9UKJ0 227 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 SHANK1Q9Y566 2161 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 ZNF587BE7ETH6 402 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 EIF1BO60739 113 aaKnown RBP11.73□□□□□ -0.53
CLK3-215ENST00000564353 THBS4P35443 961 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 FHITP49789 147 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 ZNF84P51523 738 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 TAS2R46P59540 309 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 KCNMB1Q16558 191 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 CEACAM16Q2WEN9 425 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 PEG10Q86TG7 708 aaKnown RBP11.73□□□□□ -0.53
CLK3-215ENST00000564353 DMRTC2Q8IXT2 367 aaPredicted RBP11.73□□□□□ -0.53
CLK3-215ENST00000564353 OR5T2Q8NGG2 359 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 CA5BP1Q8WTZ4 195 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 RNF141Q8WVD5 230 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 TMEM54Q969K7 222 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 CMSS1Q9BQ75 279 aaKnown RBP11.73□□□□□ -0.53
CLK3-215ENST00000564353 ANGPTL4Q9BY76 406 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 NIT2Q9NQR4 276 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 PLA2G2EQ9NZK7 142 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 PISDQ9UG56 409 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 RFNGQ9Y644 331 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 V9GYS6 101 aa11.73□□□□□ -0.53
CLK3-215ENST00000564353 PINLYPA6NC86 204 aa11.72□□□□□ -0.53
CLK3-215ENST00000564353 FAM157CP0CG43 387 aa11.72□□□□□ -0.53
CLK3-215ENST00000564353 ZNF708P17019 499 aa11.72□□□□□ -0.53
CLK3-215ENST00000564353 ADH6P28332 368 aa11.72□□□□□ -0.53
CLK3-215ENST00000564353 ZNF92Q03936 586 aa11.72□□□□□ -0.53
CLK3-215ENST00000564353 Q0VFX4 171 aa11.72□□□□□ -0.53
CLK3-215ENST00000564353 PNLIPRP3Q17RR3 467 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms