RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 COLCA2A8K830 154 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 TCP10L2B9ZVM9 353 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 E7EQ34 232 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 M0R233 179 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 PHF1O43189 567 aaPredicted RBP4.35□□□□□ -1.71
VPS35-205ENST00000563984 ALOX12BO75342 701 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 ZNF217O75362 1048 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 OR7C1O76099 320 aaPredicted RBP4.35□□□□□ -1.71
VPS35-205ENST00000563984 NDUFA7O95182 113 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 HBZP02008 142 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 PMP2P02689 132 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 UMODP07911 640 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 DANCRP0C864 163 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 LIMS3P0CW19 117 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 LIMS4P0CW20 117 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 TAC1P20366 129 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 MAOAP21397 527 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 CD34P28906 385 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 KIR2DS4P43632 304 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 BDKRB1P46663 353 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 EFNB2P52799 333 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 CLDN20P56880 219 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 OR10A3P58181 314 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 RPL8P62917 257 aaKnown RBP4.35□□□□□ -1.71
VPS35-205ENST00000563984 PITX1P78337 314 aaPredicted RBP4.35□□□□□ -1.71
VPS35-205ENST00000563984 PLCXD2Q0VAA5 305 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 Q0VFX4 171 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 IL13RA2Q14627 380 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 KIR2DS5Q14953 304 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 TMEM132DQ14C87 1099 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 PMVKQ15126 192 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 RAB35Q15286 201 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 TAL2Q16559 108 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 RPEL1Q2QD12 228 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 IAH1Q2TAA2 248 aaPredicted RBP4.35□□□□□ -1.71
VPS35-205ENST00000563984 CTU2Q2VPK5 515 aaKnown RBP4.35□□□□□ -1.71
VPS35-205ENST00000563984 ATP6AP1LQ52LC2 224 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 OR10J3Q5JRS4 329 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 PRSS54Q6PEW0 395 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 TMUB2Q71RG4 321 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 STRADAQ7RTN6 431 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 BLIDQ8IZY5 108 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 SLC39A11Q8N1S5 342 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 ZNF664Q8N3J9 261 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 LRRC57Q8N9N7 239 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 NPEPL1Q8NDH3 523 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 OR56A4Q8NGH8 313 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 OR6T1Q8NGN1 323 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 OR6K6Q8NGW6 343 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 OR2T4Q8NH00 348 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 OR51Q1Q8NH59 317 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 OR5P2Q8WZ92 322 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 MOB3AQ96BX8 217 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 FGGYQ96C11 551 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 NUS1Q96E22 293 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 GRAMD2BQ96HH9 432 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 SGK494Q96LW2 274 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 UHRF2Q96PU4 802 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 MRPL57Q9BQC6 102 aaKnown RBP4.35□□□□□ -1.71
VPS35-205ENST00000563984 TAPBPLQ9BX59 468 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 PITPNM3Q9BZ71 974 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 CDC42EP4Q9H3Q1 356 aaKnown RBP4.35□□□□□ -1.71
VPS35-205ENST00000563984 PPDPFQ9H3Y8 114 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 FNDC4Q9H6D8 234 aaPredicted RBP4.35□□□□□ -1.71
VPS35-205ENST00000563984 NHEJ1Q9H9Q4 299 aaPredicted RBP4.35□□□□□ -1.71
VPS35-205ENST00000563984 NOX3Q9HBY0 568 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 SLC17A5Q9NRA2 495 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 ARMCX1Q9P291 453 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 TNFSF18Q9UNG2 199 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 PROCRQ9UNN8 238 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 POLDIP2Q9Y2S7 368 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 TMED3Q9Y3Q3 217 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 RPL36Q9Y3U8 105 aaKnown RBP4.35□□□□□ -1.71
VPS35-205ENST00000563984 LSM5Q9Y4Y9 91 aaKnown RBP4.35□□□□□ -1.71
VPS35-205ENST00000563984 ETV7Q9Y603 341 aa4.35□□□□□ -1.71
VPS35-205ENST00000563984 TCF20Q9UGU0 1960 aaKnown RBP4.34□□□□□ -1.71
VPS35-205ENST00000563984 A0A087WX48 190 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 A0A0J9YY10 115 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 A0A1B0GX78 115 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 FAM166BA8MTA8 275 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 INAFM1C9JVW0 142 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 K7ERI5 159 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 MYL12BO14950 172 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 RGS16O15492 202 aaPredicted RBP4.34□□□□□ -1.71
VPS35-205ENST00000563984 GALR3O60755 368 aaPredicted RBP4.34□□□□□ -1.71
VPS35-205ENST00000563984 TRAPPC6AO75865 159 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 APOA2P02652 100 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 P04436 131 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 CT62P0C5K7 136 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 PSG2P11465 335 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 HSD17B1P14061 328 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 MYL12AP19105 171 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 MPZP25189 248 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 GABRA5P31644 462 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 TNFSF9P41273 254 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 DVL1P1P54792 670 aaPredicted RBP4.34□□□□□ -1.71
VPS35-205ENST00000563984 PAFAH1B2P68402 229 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 SLC35B1P78383 322 aa4.34□□□□□ -1.71
VPS35-205ENST00000563984 RPL24P83731 157 aaKnown RBP4.34□□□□□ -1.71
VPS35-205ENST00000563984 ST3GAL4Q11206 333 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms