RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 RNF122Q9H9V4 155 aa11.54□□□□□ -0.56
CLN3-210ENST00000563874 LMAN1LQ9HAT1 526 aa11.54□□□□□ -0.56
CLN3-210ENST00000563874 MYOTQ9UBF9 498 aa11.54□□□□□ -0.56
CLN3-210ENST00000563874 FRYLO94915 3013 aa11.54□□□□□ -0.56
CLN3-210ENST00000563874 FAM230AA0A1W2PPH8 454 aa11.54□□□□□ -0.56
CLN3-210ENST00000563874 CRYM-AS1A6NIL9 109 aa11.54□□□□□ -0.56
CLN3-210ENST00000563874 PRH1P02810 166 aa11.54□□□□□ -0.56
CLN3-210ENST00000563874 NXPH1P58417 271 aa11.54□□□□□ -0.56
CLN3-210ENST00000563874 OR2B8PP59922 312 aa11.54□□□□□ -0.56
CLN3-210ENST00000563874 PDCD1Q15116 288 aa11.54□□□□□ -0.56
CLN3-210ENST00000563874 GUK1Q16774 197 aa11.54□□□□□ -0.56
CLN3-210ENST00000563874 RSPO1Q2MKA7 263 aaPredicted RBP11.54□□□□□ -0.56
CLN3-210ENST00000563874 OPN5Q6U736 354 aa11.54□□□□□ -0.56
CLN3-210ENST00000563874 SLC25A45Q8N413 288 aa11.54□□□□□ -0.56
CLN3-210ENST00000563874 SMRP1Q8NCR6 262 aa11.54□□□□□ -0.56
CLN3-210ENST00000563874 ZNF385AQ96PM9 386 aaKnown RBP11.54□□□□□ -0.56
CLN3-210ENST00000563874 FAM212BQ9NTI7 297 aaPredicted RBP11.54□□□□□ -0.56
CLN3-210ENST00000563874 ANXA10Q9UJ72 324 aa11.54□□□□□ -0.56
CLN3-210ENST00000563874 FBXO7Q9Y3I1 522 aa11.54□□□□□ -0.56
CLN3-210ENST00000563874 KPTNQ9Y664 436 aa11.54□□□□□ -0.56
CLN3-210ENST00000563874 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.53□□□□□ -0.56
CLN3-210ENST00000563874 GAPDHP04406 335 aaKnown RBP11.53□□□□□ -0.56
CLN3-210ENST00000563874 ZNF14P17017 642 aaPredicted RBP11.53□□□□□ -0.56
CLN3-210ENST00000563874 SNCAP37840 140 aa11.53□□□□□ -0.56
CLN3-210ENST00000563874 CAMLGP49069 296 aa11.53□□□□□ -0.56
CLN3-210ENST00000563874 NOVA1P51513 510 aaKnown RBP11.53□□□□□ -0.56
CLN3-210ENST00000563874 MTCP1P56278 107 aa11.53□□□□□ -0.56
CLN3-210ENST00000563874 HIST3H3Q16695 136 aa11.53□□□□□ -0.56
CLN3-210ENST00000563874 SNAI3Q3KNW1 292 aa11.53□□□□□ -0.56
CLN3-210ENST00000563874 TMEM156Q8N614 296 aa11.53□□□□□ -0.56
CLN3-210ENST00000563874 OR2M3Q8NG83 312 aa11.53□□□□□ -0.56
CLN3-210ENST00000563874 CD300LFQ8TDQ1 290 aa11.53□□□□□ -0.56
CLN3-210ENST00000563874 HAS2Q92819 552 aa11.53□□□□□ -0.56
CLN3-210ENST00000563874 CRLF2Q9HC73 371 aa11.53□□□□□ -0.56
CLN3-210ENST00000563874 TUBD1Q9UJT1 453 aa11.53□□□□□ -0.56
CLN3-210ENST00000563874 TINAGQ9UJW2 476 aa11.53□□□□□ -0.56
CLN3-210ENST00000563874 B3GALT1Q9Y5Z6 326 aa11.53□□□□□ -0.56
CLN3-210ENST00000563874 C5orf52A6NGY3 159 aa11.53□□□□□ -0.56
CLN3-210ENST00000563874 MASP2O00187 686 aa11.53□□□□□ -0.56
CLN3-210ENST00000563874 ETV2O00321 342 aaPredicted RBP11.53□□□□□ -0.56
CLN3-210ENST00000563874 CTSDP07339 412 aaPredicted RBP11.53□□□□□ -0.56
CLN3-210ENST00000563874 ZNF84P51523 738 aa11.53□□□□□ -0.56
CLN3-210ENST00000563874 NHLH2Q02577 135 aa11.53□□□□□ -0.56
CLN3-210ENST00000563874 FABP9Q0Z7S8 132 aa11.53□□□□□ -0.56
CLN3-210ENST00000563874 RHBDD2Q6NTF9 364 aa11.53□□□□□ -0.56
CLN3-210ENST00000563874 ADAM5Q6NVV9 412 aa11.53□□□□□ -0.56
CLN3-210ENST00000563874 FAM24BQ8N5W8 94 aa11.53□□□□□ -0.56
CLN3-210ENST00000563874 WDSUB1Q8N9V3 476 aa11.53□□□□□ -0.56
CLN3-210ENST00000563874 OR5L1Q8NGL2 311 aa11.53□□□□□ -0.56
CLN3-210ENST00000563874 ZNF837Q96EG3 531 aaPredicted RBP11.53□□□□□ -0.56
CLN3-210ENST00000563874 OR6C1Q96RD1 312 aa11.53□□□□□ -0.56
CLN3-210ENST00000563874 CHST5Q9GZS9 411 aa11.53□□□□□ -0.56
CLN3-210ENST00000563874 PLEK2Q9NYT0 353 aa11.53□□□□□ -0.56
CLN3-210ENST00000563874 AK3Q9UIJ7 227 aa11.53□□□□□ -0.56
CLN3-210ENST00000563874 RFNGQ9Y644 331 aa11.53□□□□□ -0.56
CLN3-210ENST00000563874 EXPH5Q8NEV8 1989 aa11.52□□□□□ -0.56
CLN3-210ENST00000563874 MSR1P21757 451 aa11.52□□□□□ -0.56
CLN3-210ENST00000563874 CSNK1A1P48729 337 aa11.52□□□□□ -0.56
CLN3-210ENST00000563874 FAM3AP98173 230 aa11.52□□□□□ -0.56
CLN3-210ENST00000563874 ENDOGQ14249 297 aaKnown RBP11.52□□□□□ -0.56
CLN3-210ENST00000563874 ABCA11PQ4W5N1 156 aa11.52□□□□□ -0.56
CLN3-210ENST00000563874 BATF2Q8N1L9 274 aa11.52□□□□□ -0.56
CLN3-210ENST00000563874 UBAC2Q8NBM4 344 aa11.52□□□□□ -0.56
CLN3-210ENST00000563874 OR52M1Q8NGK5 317 aa11.52□□□□□ -0.56
CLN3-210ENST00000563874 RTN4IP1Q8WWV3 396 aaPredicted RBP11.52□□□□□ -0.56
CLN3-210ENST00000563874 MARS2Q96GW9 593 aaKnown RBP11.52□□□□□ -0.56
CLN3-210ENST00000563874 UCN2Q96RP3 112 aa11.52□□□□□ -0.56
CLN3-210ENST00000563874 TM2D1Q9BX74 207 aa11.52□□□□□ -0.56
CLN3-210ENST00000563874 AKIRIN1Q9H9L7 192 aaPredicted RBP11.52□□□□□ -0.56
CLN3-210ENST00000563874 NIT2Q9NQR4 276 aa11.52□□□□□ -0.56
CLN3-210ENST00000563874 GHRLQ9UBU3 117 aa11.52□□□□□ -0.56
CLN3-210ENST00000563874 STARD10Q9Y365 291 aa11.52□□□□□ -0.56
CLN3-210ENST00000563874 FREM2Q5SZK8 3169 aa11.52□□□□□ -0.57
CLN3-210ENST00000563874 AQP7P3A6NL99 342 aa11.52□□□□□ -0.57
CLN3-210ENST00000563874 G3V3Y1 287 aa11.52□□□□□ -0.57
CLN3-210ENST00000563874 OR13C7P0DN81 318 aa11.52□□□□□ -0.57
CLN3-210ENST00000563874 FOLR2P14207 255 aa11.52□□□□□ -0.57
CLN3-210ENST00000563874 GLB1P16278 677 aa11.52□□□□□ -0.57
CLN3-210ENST00000563874 ACKR3P25106 362 aa11.52□□□□□ -0.57
CLN3-210ENST00000563874 MSX1P28360 303 aa11.52□□□□□ -0.57
CLN3-210ENST00000563874 SSPNQ14714 243 aa11.52□□□□□ -0.57
CLN3-210ENST00000563874 SLC25A53Q5H9E4 307 aa11.52□□□□□ -0.57
CLN3-210ENST00000563874 PLXDC2Q6UX71 529 aa11.52□□□□□ -0.57
CLN3-210ENST00000563874 SLC16A14Q7RTX9 510 aa11.52□□□□□ -0.57
CLN3-210ENST00000563874 GJC3Q8NFK1 279 aa11.52□□□□□ -0.57
CLN3-210ENST00000563874 OR11L1Q8NGX0 322 aa11.52□□□□□ -0.57
CLN3-210ENST00000563874 RCL1Q9Y2P8 373 aaKnown RBP11.52□□□□□ -0.57
CLN3-210ENST00000563874 A0A1W2PPE2 198 aa11.51□□□□□ -0.57
CLN3-210ENST00000563874 M0R135 149 aa11.51□□□□□ -0.57
CLN3-210ENST00000563874 TLX3O43711 291 aaPredicted RBP11.51□□□□□ -0.57
CLN3-210ENST00000563874 S100A9P06702 114 aaKnown RBP11.51□□□□□ -0.57
CLN3-210ENST00000563874 ALDH3B1P43353 468 aa11.51□□□□□ -0.57
CLN3-210ENST00000563874 OR5L2Q8NGL0 311 aa11.51□□□□□ -0.57
CLN3-210ENST00000563874 LYPD6BQ8NI32 183 aa11.51□□□□□ -0.57
CLN3-210ENST00000563874 ZNF799Q96GE5 643 aa11.51□□□□□ -0.57
CLN3-210ENST00000563874 Q96M66 194 aa11.51□□□□□ -0.57
CLN3-210ENST00000563874 TGIF2Q9GZN2 237 aa11.51□□□□□ -0.57
CLN3-210ENST00000563874 EGLN1Q9GZT9 426 aa11.51□□□□□ -0.57
CLN3-210ENST00000563874 CA14Q9ULX7 337 aa11.51□□□□□ -0.57
CLN3-210ENST00000563874 UMAD1C9J7I0 102 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms