RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 SMPD2O60906 423 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 HTR3BO95264 441 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 TCRBP04435 133 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 MGMTP16455 207 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 PSMB1P20618 241 aaKnown RBP7.66□□□□□ -1.18
VPS39-207ENST00000563692 SERPINA2P20848 420 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 GIFP27352 417 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 HLA-DMAP28067 261 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 CBX5P45973 191 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 RAG2P55895 527 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 GNG2P59768 71 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 ZP1P60852 638 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 DAZAP2Q15038 168 aaPredicted RBP7.66□□□□□ -1.18
VPS39-207ENST00000563692 PLA1AQ53H76 456 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 AGAP6Q5VW22 663 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 OLFML2AQ68BL7 652 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 ZNF474Q6S9Z5 364 aaPredicted RBP7.66□□□□□ -1.18
VPS39-207ENST00000563692 ZNF782Q6ZMW2 699 aaPredicted RBP7.66□□□□□ -1.18
VPS39-207ENST00000563692 BTN2A1Q7KYR7 527 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 C1QL2Q7Z5L3 287 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 BIVMQ86UB2 503 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 ZNF573Q86YE8 665 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 SAXO1Q8IYX7 474 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 TMEM104Q8NE00 496 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 OR51F2Q8NH61 342 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 LINC01560Q8TB33 94 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 UBASH3BQ8TF42 649 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 CHAC2Q8WUX2 184 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 NINJ1Q92982 152 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 RNF170Q96K19 258 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 C1orf147Q96MC9 270 aaPredicted RBP7.66□□□□□ -1.18
VPS39-207ENST00000563692 MICU1Q9BPX6 476 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 TM2D1Q9BX74 207 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 C1QTNF6Q9BXI9 259 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 MCUBQ9NWR8 336 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 JKAMPQ9P055 326 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 GPR160Q9UJ42 338 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 POLQO75417 2590 aa7.66□□□□□ -1.18
VPS39-207ENST00000563692 CSMD1Q96PZ7 3565 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 PQLC2LA1A4F0 135 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 HMX3A6NHT5 357 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 ZNF736B4DX44 427 aaPredicted RBP7.65□□□□□ -1.18
VPS39-207ENST00000563692 ZNF732B4DXR9 585 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 DISC1C4P0D8 188 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 CA11O75493 328 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 IGLV1-44P01699 117 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 MT-ND4P03905 459 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 CELA3BP08861 270 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 H2AFB2P0C5Z0 115 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 FAM157BP0CG42 384 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 PTHLHP12272 177 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 ZNF35P13682 527 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 HIST1H1DP16402 221 aaKnown RBP7.65□□□□□ -1.18
VPS39-207ENST00000563692 DNASE1P24855 282 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 BLVRBP30043 206 aaPredicted RBP7.65□□□□□ -1.18
VPS39-207ENST00000563692 GCH1P30793 250 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 LRBAP50851 2863 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 HCFC1P51610 2035 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 GNG3P63215 75 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 GUCA2AQ02747 115 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 MZT1Q08AG7 82 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 ARFRP1Q13795 201 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 MEF2DQ14814 521 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 ZNF718Q3SXZ3 478 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 MOGAT2Q3SYC2 334 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 DMRTC1Q5HYR2 192 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 SFRP4Q6FHJ7 346 aaPredicted RBP7.65□□□□□ -1.18
VPS39-207ENST00000563692 OR2T2Q6IF00 324 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 STEAP1BQ6NZ63 245 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 RFPL4BQ6ZWI9 263 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 RNF144BQ7Z419 303 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 TRAPPC6BQ86SZ2 158 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 AKAP14Q86UN6 197 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 OSR2Q8N2R0 312 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 OR8S1Q8NH09 359 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 OR56B4Q8NH76 319 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 SLC25A40Q8TBP6 338 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 OR5P3Q8WZ94 311 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 GCDHQ92947 438 aaPredicted RBP7.65□□□□□ -1.18
VPS39-207ENST00000563692 OR2J1Q9GZK6 312 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 OR51B6Q9H340 312 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 ZMAT3Q9HA38 289 aaKnown RBP7.65□□□□□ -1.18
VPS39-207ENST00000563692 IFT46Q9NQC8 304 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP7.65□□□□□ -1.18
VPS39-207ENST00000563692 TMEM100Q9NV29 134 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 NKIRAS2Q9NYR9 191 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 SLC25A15Q9Y619 301 aa7.65□□□□□ -1.18
VPS39-207ENST00000563692 FBN2P35556 2912 aa7.65□□□□□ -1.19
VPS39-207ENST00000563692 ARHGAP21Q5T5U3 1957 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 IGKV1-27A0A075B6S5 117 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.64□□□□□ -1.19
VPS39-207ENST00000563692 TMEM235A6NFC5 223 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 SERPINE3A8MV23 424 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 C16orf97H3BN30 126 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 TRAPPC2LH3BP13 241 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 SOCS1O15524 211 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 TPD52L2O43399 206 aaKnown RBP7.64□□□□□ -1.19
VPS39-207ENST00000563692 SPRY1O43609 319 aaPredicted RBP7.64□□□□□ -1.19
VPS39-207ENST00000563692 ANGPTL7O43827 346 aa7.64□□□□□ -1.19
VPS39-207ENST00000563692 RAB3DO95716 219 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms