RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 TIAL1Q01085 375 aaKnown RBP eCLIP5.6□□□□□ -1.51
CLK3-212ENST00000563418 KIAA0040Q15053 153 aa5.6□□□□□ -1.51
CLK3-212ENST00000563418 RAET1LQ5VY80 246 aa5.6□□□□□ -1.51
CLK3-212ENST00000563418 IMMP2LQ96T52 175 aa5.6□□□□□ -1.51
CLK3-212ENST00000563418 DDX60LQ5H9U9 1706 aaKnown RBP5.6□□□□□ -1.51
CLK3-212ENST00000563418 C19orf67A6NJJ6 358 aa5.6□□□□□ -1.51
CLK3-212ENST00000563418 IGHEP01854 428 aa5.6□□□□□ -1.51
CLK3-212ENST00000563418 GYPAP02724 150 aa5.6□□□□□ -1.51
CLK3-212ENST00000563418 MELTFP08582 738 aa5.6□□□□□ -1.51
CLK3-212ENST00000563418 HNRNPA1P09651 372 aaKnown RBP eCLIP5.6□□□□□ -1.51
CLK3-212ENST00000563418 OR1D4P47884 311 aa5.6□□□□□ -1.51
CLK3-212ENST00000563418 LIMS1P48059 325 aa5.6□□□□□ -1.51
CLK3-212ENST00000563418 SLC37A1P57057 533 aa5.6□□□□□ -1.51
CLK3-212ENST00000563418 HNRNPA1L2Q32P51 320 aaKnown RBP5.6□□□□□ -1.51
CLK3-212ENST00000563418 Q56UQ5 140 aa5.6□□□□□ -1.51
CLK3-212ENST00000563418 RTN4RL1Q86UN2 441 aaPredicted RBP5.6□□□□□ -1.51
CLK3-212ENST00000563418 OR10J5Q8NHC4 309 aa5.6□□□□□ -1.51
CLK3-212ENST00000563418 TM4SF18Q96CE8 201 aa5.6□□□□□ -1.51
CLK3-212ENST00000563418 EPHX3Q9H6B9 360 aa5.6□□□□□ -1.51
CLK3-212ENST00000563418 ELOVL5Q9NYP7 299 aa5.6□□□□□ -1.51
CLK3-212ENST00000563418 TRBV24-1A0A075B6N3 115 aa5.6□□□□□ -1.51
CLK3-212ENST00000563418 EDDM13A0A1B0GTR0 161 aa5.6□□□□□ -1.51
CLK3-212ENST00000563418 CTXND1A0A1B0GTU2 59 aa5.6□□□□□ -1.51
CLK3-212ENST00000563418 A6NCN8 305 aa5.6□□□□□ -1.51
CLK3-212ENST00000563418 CST5P28325 142 aaPredicted RBP5.6□□□□□ -1.51
CLK3-212ENST00000563418 SIGLEC14Q08ET2 396 aa5.6□□□□□ -1.51
CLK3-212ENST00000563418 C10orf91Q5T1B1 145 aa5.6□□□□□ -1.51
CLK3-212ENST00000563418 RTL10Q7L3V2 364 aa5.6□□□□□ -1.51
CLK3-212ENST00000563418 CHODLQ9H9P2 273 aa5.6□□□□□ -1.51
CLK3-212ENST00000563418 CLN8Q9UBY8 286 aa5.6□□□□□ -1.51
CLK3-212ENST00000563418 TMEM156Q8N614 296 aa5.6□□□□□ -1.51
CLK3-212ENST00000563418 SGMS2Q8NHU3 365 aa5.6□□□□□ -1.51
CLK3-212ENST00000563418 MRPL30Q8TCC3 161 aaKnown RBP5.6□□□□□ -1.51
CLK3-212ENST00000563418 Q8WTZ3 238 aa5.6□□□□□ -1.51
CLK3-212ENST00000563418 VSIG4Q9Y279 399 aa5.6□□□□□ -1.51
CLK3-212ENST00000563418 TRAV36DV7A0A075B6V5 113 aa5.6□□□□□ -1.51
CLK3-212ENST00000563418 DEGS1O15121 323 aa5.6□□□□□ -1.51
CLK3-212ENST00000563418 CCL23P55773 120 aa5.6□□□□□ -1.51
CLK3-212ENST00000563418 C9orf131Q5VYM1 1079 aa5.6□□□□□ -1.51
CLK3-212ENST00000563418 RHBDD1Q8TEB9 315 aa5.6□□□□□ -1.51
CLK3-212ENST00000563418 CPEB1Q9BZB8 566 aaKnown RBP5.6□□□□□ -1.51
CLK3-212ENST00000563418 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP5.6□□□□□ -1.51
CLK3-212ENST00000563418 TAF1P21675 1872 aa5.6□□□□□ -1.51
CLK3-212ENST00000563418 RGPD3A6NKT7 1758 aaPredicted RBP5.59□□□□□ -1.51
CLK3-212ENST00000563418 RGPD4Q7Z3J3 1758 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 KLRG2A4D1S0 409 aaPredicted RBP5.59□□□□□ -1.51
CLK3-212ENST00000563418 TMEM88BA6NKF7 163 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 SLC25A17O43808 307 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 LBX1P52954 281 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 PCBD1P61457 104 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 FAM69BQ5VUD6 431 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 FAM169BQ8N8A8 192 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 OR4S2Q8NH73 311 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 SPANXDQ9BXN6 97 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 KLRF1Q9NZS2 232 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 RBBP6Q7Z6E9 1792 aaKnown RBP5.59□□□□□ -1.51
CLK3-212ENST00000563418 FUT3P21217 361 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 MPZP25189 248 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 LSM6P62312 80 aaKnown RBP5.59□□□□□ -1.51
CLK3-212ENST00000563418 MRPL49Q13405 166 aaKnown RBP5.59□□□□□ -1.51
CLK3-212ENST00000563418 POM121L1PQ3SYA9 428 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 TMEM176BQ3YBM2 270 aaPredicted RBP5.59□□□□□ -1.51
CLK3-212ENST00000563418 OR5D18Q8NGL1 313 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 OR10S1Q8NGN2 331 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 OR4A16Q8NH70 328 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 ADTRPQ96IZ2 230 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 KCNS1Q96KK3 526 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 FAM173AQ9BQD7 235 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 CUTCQ9NTM9 273 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 ZNF860A6NHJ4 632 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 ARPC3O15145 178 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 GNG7O60262 68 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 OR5AL1P0C617 328 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 PLCXD2Q0VAA5 305 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 ZNF880Q6PDB4 577 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 OR1L3Q8NH93 324 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 MUCL1Q96DR8 90 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 ULBP3Q9BZM4 244 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 PTPRFP10586 1907 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 UBE2L5PA0A1B0GUS4 154 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 FEZF1A0PJY2 475 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 OR2W5A6NFC9 320 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 VSTM5A8MXK1 200 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 LDLRAD4O15165 306 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 IGHV2-5P01817 119 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 TGFBR3Q03167 851 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 SLC48A1Q6P1K1 146 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 TTC9BQ8N6N2 239 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 DNAJA3Q96EY1 480 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 SLC52A3Q9NQ40 469 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 HS3ST3A1Q9Y663 406 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 SNURFLB1AK76 121 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 OTX2P32243 289 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 DCDP81605 110 aaKnown RBP5.59□□□□□ -1.51
CLK3-212ENST00000563418 SHHQ15465 462 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 DEFB134Q4QY38 66 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 IP6K3Q96PC2 410 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 C20orf144Q9BQM9 153 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 VN1R1Q9GZP7 353 aa5.59□□□□□ -1.51
CLK3-212ENST00000563418 CES1P1Q9UKY3 287 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms