RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 HAAOP46952 286 aa13.2□□□□□ -0.3
CLN3-208ENST00000561505 CEBPDP49716 269 aaPredicted RBP13.2□□□□□ -0.3
CLN3-208ENST00000561505 MNAT1P51948 309 aa13.2□□□□□ -0.3
CLN3-208ENST00000561505 BLCAPP62952 87 aa13.2□□□□□ -0.3
CLN3-208ENST00000561505 CLVS2Q5SYC1 327 aa13.2□□□□□ -0.3
CLN3-208ENST00000561505 ZNF684Q5T5D7 378 aa13.2□□□□□ -0.3
CLN3-208ENST00000561505 PLCXD3Q63HM9 321 aa13.2□□□□□ -0.3
CLN3-208ENST00000561505 OR4M1Q8NGD0 313 aa13.2□□□□□ -0.3
CLN3-208ENST00000561505 OR13D1Q8NGV5 346 aa13.2□□□□□ -0.3
CLN3-208ENST00000561505 SGCDQ92629 289 aa13.2□□□□□ -0.3
CLN3-208ENST00000561505 NKX3-1Q99801 234 aaPredicted RBP13.2□□□□□ -0.3
CLN3-208ENST00000561505 MROQ9BYG7 248 aa13.2□□□□□ -0.3
CLN3-208ENST00000561505 PKIBQ9C010 78 aa13.2□□□□□ -0.3
CLN3-208ENST00000561505 SLC25A19Q9HC21 320 aa13.2□□□□□ -0.3
CLN3-208ENST00000561505 TAS2R1Q9NYW7 299 aa13.2□□□□□ -0.3
CLN3-208ENST00000561505 CCDC182A6NF36 153 aa13.19□□□□□ -0.3
CLN3-208ENST00000561505 GSC2O15499 205 aa13.19□□□□□ -0.3
CLN3-208ENST00000561505 IGHV1-8P0DP01 117 aa13.19□□□□□ -0.3
CLN3-208ENST00000561505 IL24Q13007 206 aa13.19□□□□□ -0.3
CLN3-208ENST00000561505 MINOS1Q5TGZ0 78 aa13.19□□□□□ -0.3
CLN3-208ENST00000561505 ZNF782Q6ZMW2 699 aaPredicted RBP13.19□□□□□ -0.3
CLN3-208ENST00000561505 TCF23Q7RTU1 214 aa13.19□□□□□ -0.3
CLN3-208ENST00000561505 ELMOD2Q8IZ81 293 aa13.19□□□□□ -0.3
CLN3-208ENST00000561505 OR14K1Q8NGZ2 314 aa13.19□□□□□ -0.3
CLN3-208ENST00000561505 ASB17Q8WXJ9 295 aa13.19□□□□□ -0.3
CLN3-208ENST00000561505 CHID1Q9BWS9 393 aa13.19□□□□□ -0.3
CLN3-208ENST00000561505 C1orf21Q9H246 121 aa13.19□□□□□ -0.3
CLN3-208ENST00000561505 ARL2BPQ9Y2Y0 163 aa13.19□□□□□ -0.3
CLN3-208ENST00000561505 MINOS1-NBL1R4GNA1 71 aa13.19□□□□□ -0.3
CLN3-208ENST00000561505 DSCAML1Q8TD84 2053 aa13.19□□□□□ -0.3
CLN3-208ENST00000561505 K7EIL1 84 aa13.18□□□□□ -0.3
CLN3-208ENST00000561505 NXPH2O95156 264 aa13.18□□□□□ -0.3
CLN3-208ENST00000561505 CST1P01037 141 aa13.18□□□□□ -0.3
CLN3-208ENST00000561505 MEF2CQ06413 473 aaPredicted RBP13.18□□□□□ -0.3
CLN3-208ENST00000561505 MFGE8Q08431 387 aaPredicted RBP13.18□□□□□ -0.3
CLN3-208ENST00000561505 SSX2Q16385 188 aa13.18□□□□□ -0.3
CLN3-208ENST00000561505 TCTEX1D4Q5JR98 221 aa13.18□□□□□ -0.3
CLN3-208ENST00000561505 VAX1Q5SQQ9 334 aa13.18□□□□□ -0.3
CLN3-208ENST00000561505 TMEM219Q86XT9 240 aa13.18□□□□□ -0.3
CLN3-208ENST00000561505 ADGRG5Q8IZF4 528 aa13.18□□□□□ -0.3
CLN3-208ENST00000561505 COPS3Q9UNS2 423 aa13.18□□□□□ -0.3
CLN3-208ENST00000561505 TMEM14AQ9Y6G1 99 aa13.18□□□□□ -0.3
CLN3-208ENST00000561505 DNAH9Q9NYC9 4486 aa13.17□□□□□ -0.3
CLN3-208ENST00000561505 RYR3Q15413 4870 aa13.17□□□□□ -0.3
CLN3-208ENST00000561505 DCTN3O75935 186 aa13.17□□□□□ -0.3
CLN3-208ENST00000561505 ARG1P05089 322 aa13.17□□□□□ -0.3
CLN3-208ENST00000561505 CHRM2P08172 466 aa13.17□□□□□ -0.3
CLN3-208ENST00000561505 CCL1P22362 96 aa13.17□□□□□ -0.3
CLN3-208ENST00000561505 AZGP1P25311 298 aaKnown RBP13.17□□□□□ -0.3
CLN3-208ENST00000561505 EFNB1P98172 346 aa13.17□□□□□ -0.3
CLN3-208ENST00000561505 APOFQ13790 326 aa13.17□□□□□ -0.3
CLN3-208ENST00000561505 ZNF829Q3KNS6 432 aaPredicted RBP13.17□□□□□ -0.3
CLN3-208ENST00000561505 ASB9Q96DX5 294 aa13.17□□□□□ -0.3
CLN3-208ENST00000561505 FAM107BQ9H098 131 aa13.17□□□□□ -0.3
CLN3-208ENST00000561505 MOB1AQ9H8S9 216 aa13.17□□□□□ -0.3
CLN3-208ENST00000561505 ABCB10Q9NRK6 738 aa13.17□□□□□ -0.3
CLN3-208ENST00000561505 B2RBV5 119 aa13.16□□□□□ -0.3
CLN3-208ENST00000561505 PSMD9O00233 223 aa13.16□□□□□ -0.3
CLN3-208ENST00000561505 ALDOBP05062 364 aa13.16□□□□□ -0.3
CLN3-208ENST00000561505 ANXA8P13928 327 aa13.16□□□□□ -0.3
CLN3-208ENST00000561505 IGLL1P15814 213 aa13.16□□□□□ -0.3
CLN3-208ENST00000561505 HOXB6P17509 224 aaKnown RBP13.16□□□□□ -0.3
CLN3-208ENST00000561505 RIDAP52758 137 aaKnown RBP13.16□□□□□ -0.3
CLN3-208ENST00000561505 COL10A1Q03692 680 aa13.16□□□□□ -0.3
CLN3-208ENST00000561505 EGFEM1PQ0D2K5 195 aa13.16□□□□□ -0.3
CLN3-208ENST00000561505 OR8H2Q8N162 312 aa13.16□□□□□ -0.3
CLN3-208ENST00000561505 OR5AU1Q8NGC0 362 aa13.16□□□□□ -0.3
CLN3-208ENST00000561505 MTCH1Q9NZJ7 389 aa13.16□□□□□ -0.3
CLN3-208ENST00000561505 SLC22A13Q9Y226 551 aa13.16□□□□□ -0.3
CLN3-208ENST00000561505 F8VVB4 439 aa13.15□□□□□ -0.3
CLN3-208ENST00000561505 F8VWA3 439 aa13.15□□□□□ -0.3
CLN3-208ENST00000561505 VDAC2P45880 294 aaPredicted RBP13.15□□□□□ -0.3
CLN3-208ENST00000561505 PLA1AQ53H76 456 aa13.15□□□□□ -0.3
CLN3-208ENST00000561505 TMEM236Q5W0B7 351 aa13.15□□□□□ -0.3
CLN3-208ENST00000561505 C16orf82Q7Z2V1 217 aa13.15□□□□□ -0.3
CLN3-208ENST00000561505 SNX22Q96L94 193 aa13.15□□□□□ -0.3
CLN3-208ENST00000561505 ZNF714Q96N38 554 aa13.15□□□□□ -0.3
CLN3-208ENST00000561505 MNTQ99583 582 aa13.15□□□□□ -0.3
CLN3-208ENST00000561505 GPR173Q9NS66 373 aa13.15□□□□□ -0.3
CLN3-208ENST00000561505 OR14J1Q9UGF5 321 aa13.15□□□□□ -0.3
CLN3-208ENST00000561505 LINC00312Q9Y6C7 94 aa13.15□□□□□ -0.3
CLN3-208ENST00000561505 R4GMQ9 66 aa13.15□□□□□ -0.3
CLN3-208ENST00000561505 TMEM82A0PJX8 343 aa13.14□□□□□ -0.31
CLN3-208ENST00000561505 AQP12BA6NM10 295 aa13.14□□□□□ -0.31
CLN3-208ENST00000561505 ATP8B1O43520 1251 aa13.14□□□□□ -0.31
CLN3-208ENST00000561505 T-ENOLP0DO92 83 aa13.14□□□□□ -0.31
CLN3-208ENST00000561505 PIPP12273 146 aaPredicted RBP13.14□□□□□ -0.31
CLN3-208ENST00000561505 JUNBP17275 347 aaPredicted RBP13.14□□□□□ -0.31
CLN3-208ENST00000561505 CD33P20138 364 aa13.14□□□□□ -0.31
CLN3-208ENST00000561505 OR12D2P58182 307 aa13.14□□□□□ -0.31
CLN3-208ENST00000561505 RPS7P62081 194 aaKnown RBP13.14□□□□□ -0.31
CLN3-208ENST00000561505 ACTA2P62736 377 aa13.14□□□□□ -0.31
CLN3-208ENST00000561505 ACTG2P63267 376 aa13.14□□□□□ -0.31
CLN3-208ENST00000561505 ACTC1P68032 377 aa13.14□□□□□ -0.31
CLN3-208ENST00000561505 ACTA1P68133 377 aa13.14□□□□□ -0.31
CLN3-208ENST00000561505 TMEM95Q3KNT9 176 aa13.14□□□□□ -0.31
CLN3-208ENST00000561505 ASRGL1Q7L266 308 aa13.14□□□□□ -0.31
CLN3-208ENST00000561505 ANGPTL5Q86XS5 388 aa13.14□□□□□ -0.31
CLN3-208ENST00000561505 AQP12AQ8IXF9 295 aa13.14□□□□□ -0.31
CLN3-208ENST00000561505 HS3ST5Q8IZT8 346 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms