RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 C3orf80F5H4A9 247 aa11.2□□□□□ -0.62
LDLR-207ENST00000558013 ONECUT2O95948 504 aa11.2□□□□□ -0.62
LDLR-207ENST00000558013 ZNF32P17041 273 aa11.2□□□□□ -0.62
LDLR-207ENST00000558013 PIGPP57054 158 aa11.2□□□□□ -0.62
LDLR-207ENST00000558013 UQCC3Q6UW78 93 aa11.2□□□□□ -0.62
LDLR-207ENST00000558013 ADAMTS17Q8TE56 1095 aa11.2□□□□□ -0.62
LDLR-207ENST00000558013 CNTNAP3BQ96NU0 1288 aa11.2□□□□□ -0.62
LDLR-207ENST00000558013 GPHA2Q96T91 129 aa11.2□□□□□ -0.62
LDLR-207ENST00000558013 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.2□□□□□ -0.628e-6■■■■□ 26.5
LDLR-207ENST00000558013 FBXL17Q9UF56 701 aa11.2□□□□□ -0.62
LDLR-207ENST00000558013 PADI1Q9ULC6 663 aa11.2□□□□□ -0.62
LDLR-207ENST00000558013 KLK3P07288 261 aaPredicted RBP11.2□□□□□ -0.62
LDLR-207ENST00000558013 CRYGSP22914 178 aa11.2□□□□□ -0.62
LDLR-207ENST00000558013 RPL12P30050 165 aaKnown RBP11.2□□□□□ -0.62
LDLR-207ENST00000558013 FHITP49789 147 aa11.2□□□□□ -0.62
LDLR-207ENST00000558013 ASCL1P50553 236 aa11.2□□□□□ -0.62
LDLR-207ENST00000558013 TMEM33P57088 247 aa11.2□□□□□ -0.62
LDLR-207ENST00000558013 LYZL2Q7Z4W2 148 aa11.2□□□□□ -0.62
LDLR-207ENST00000558013 RHBDD1Q8TEB9 315 aa11.2□□□□□ -0.62
LDLR-207ENST00000558013 SCGB3A2Q96PL1 93 aa11.2□□□□□ -0.62
LDLR-207ENST00000558013 CNTNAP3Q9BZ76 1288 aa11.2□□□□□ -0.62
LDLR-207ENST00000558013 KNTC1P50748 2209 aa11.2□□□□□ -0.62
LDLR-207ENST00000558013 SYNGR3O43761 229 aa11.2□□□□□ -0.62
LDLR-207ENST00000558013 CXCL13O43927 109 aa11.2□□□□□ -0.62
LDLR-207ENST00000558013 FCGR2CP31995 323 aa11.2□□□□□ -0.62
LDLR-207ENST00000558013 RFC3P40938 356 aa11.2□□□□□ -0.62
LDLR-207ENST00000558013 PJVKQ0ZLH3 352 aa11.2□□□□□ -0.62
LDLR-207ENST00000558013 HFEQ30201 348 aa11.2□□□□□ -0.62
LDLR-207ENST00000558013 FAM27BQ5VT28 67 aa11.2□□□□□ -0.62
LDLR-207ENST00000558013 FBXL14Q8N1E6 418 aa11.2□□□□□ -0.62
LDLR-207ENST00000558013 SPTSSAQ969W0 71 aa11.2□□□□□ -0.62
LDLR-207ENST00000558013 SMOC1Q9H4F8 434 aa11.2□□□□□ -0.62
LDLR-207ENST00000558013 MMP26Q9NRE1 261 aa11.2□□□□□ -0.62
LDLR-207ENST00000558013 ZNF587BE7ETH6 402 aa11.19□□□□□ -0.62
LDLR-207ENST00000558013 EIF1BO60739 113 aaKnown RBP11.19□□□□□ -0.62
LDLR-207ENST00000558013 OR5AC1P0C628 307 aa11.19□□□□□ -0.62
LDLR-207ENST00000558013 OR8U9P0C7N5 309 aa11.19□□□□□ -0.62
LDLR-207ENST00000558013 FGF5P12034 268 aa11.19□□□□□ -0.62
LDLR-207ENST00000558013 CD80P33681 288 aa11.19□□□□□ -0.62
LDLR-207ENST00000558013 RGS19P49795 217 aa11.19□□□□□ -0.62
LDLR-207ENST00000558013 C9orf135Q5VTT2 229 aa11.19□□□□□ -0.62
LDLR-207ENST00000558013 FOXL2NBQ6ZUU3 175 aa11.19□□□□□ -0.62
LDLR-207ENST00000558013 OR10AD1Q8NGE0 317 aa11.19□□□□□ -0.62
LDLR-207ENST00000558013 OR5L1Q8NGL2 311 aa11.19□□□□□ -0.62
LDLR-207ENST00000558013 OR8U1Q8NH10 309 aa11.19□□□□□ -0.62
LDLR-207ENST00000558013 FNDC9Q8TBE3 224 aa11.19□□□□□ -0.62
LDLR-207ENST00000558013 CMSS1Q9BQ75 279 aaKnown RBP11.19□□□□□ -0.62
LDLR-207ENST00000558013 P4HTMQ9NXG6 502 aa11.19□□□□□ -0.62
LDLR-207ENST00000558013 GHRLQ9UBU3 117 aa11.19□□□□□ -0.62
LDLR-207ENST00000558013 PILRBQ9UKJ0 227 aa11.19□□□□□ -0.62
LDLR-207ENST00000558013 RFNGQ9Y644 331 aa11.19□□□□□ -0.62
LDLR-207ENST00000558013 NSG1A0A0A6YYJ2 146 aa11.19□□□□□ -0.62
LDLR-207ENST00000558013 K7EPK0 472 aa11.19□□□□□ -0.62
LDLR-207ENST00000558013 TRAPPC6AO75865 159 aa11.19□□□□□ -0.62
LDLR-207ENST00000558013 CLDN15P56746 228 aa11.19□□□□□ -0.62
LDLR-207ENST00000558013 PSG4Q00888 419 aa11.19□□□□□ -0.62
LDLR-207ENST00000558013 ZNF92Q03936 586 aa11.19□□□□□ -0.62
LDLR-207ENST00000558013 Q0VFX4 171 aa11.19□□□□□ -0.62
LDLR-207ENST00000558013 STK11Q15831 433 aa11.19□□□□□ -0.62
LDLR-207ENST00000558013 WIPI1Q5MNZ9 446 aaPredicted RBP11.19□□□□□ -0.62
LDLR-207ENST00000558013 SGPP2Q8IWX5 399 aa11.19□□□□□ -0.62
LDLR-207ENST00000558013 ZFP82Q8N141 532 aa11.19□□□□□ -0.62
LDLR-207ENST00000558013 FAM71E2Q8N5Q1 922 aa11.19□□□□□ -0.62
LDLR-207ENST00000558013 ESX1Q8N693 406 aa11.19□□□□□ -0.62
LDLR-207ENST00000558013 AGBL5Q8NDL9 886 aa11.19□□□□□ -0.62
LDLR-207ENST00000558013 OR14L1PQ8NHC6 308 aa11.19□□□□□ -0.62
LDLR-207ENST00000558013 ZNF845Q96IR2 970 aaPredicted RBP11.19□□□□□ -0.62
LDLR-207ENST00000558013 NRIP2Q9BQI9 281 aa11.19□□□□□ -0.62
LDLR-207ENST00000558013 C1orf123Q9NWV4 160 aa11.19□□□□□ -0.62
LDLR-207ENST00000558013 AMDHD2Q9Y303 409 aa11.19□□□□□ -0.62
LDLR-207ENST00000558013 SPENQ96T58 3664 aaKnown RBP11.18□□□□□ -0.62
LDLR-207ENST00000558013 C1QL1O75973 258 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 CCL2P13500 99 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 HTR5AP47898 357 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 ZNF84P51523 738 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 B3GALT5-AS1P59052 145 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 RAC1P63000 192 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 CCDC157Q569K6 752 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 C2CD4CQ8TF44 421 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 ABHD3Q8WU67 409 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 ZNF700Q9H0M5 742 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 SH2D2AQ9NP31 389 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 BOD1L1Q8NFC6 3051 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 A0A1B0GV50 99 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 CRYM-AS1A6NIL9 109 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 MBPP02686 304 aaPredicted RBP11.18□□□□□ -0.62
LDLR-207ENST00000558013 FCGR3AP08637 254 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 CARD18P57730 90 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 MRPS34P82930 218 aaKnown RBP11.18□□□□□ -0.62
LDLR-207ENST00000558013 CALHM1Q8IU99 346 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 OR1F12Q8NHA8 337 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 HLA-CQ95604 372 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 SMIM8Q96KF7 97 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 METTL9Q9H1A3 318 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 WDR54Q9H977 334 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 DNAJC13O75165 2243 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 A0A087WZY1 265 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 SFTA3P0C7M3 94 aa11.18□□□□□ -0.62
LDLR-207ENST00000558013 PVALBP20472 110 aaPredicted RBP11.18□□□□□ -0.62
LDLR-207ENST00000558013 IL32P24001 234 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms