RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-222	ENST00000555774	ZNF774	Q6NX45	483 aa		11.74	□□□□□ -0.53
SHMT2-222	ENST00000555774	HAGHL	Q6PII5	290 aa	Predicted RBP	11.74	□□□□□ -0.53
SHMT2-222	ENST00000555774	LRTM2	Q8N967	370 aa		11.74	□□□□□ -0.53
SHMT2-222	ENST00000555774	HDHD3	Q9BSH5	251 aa	Predicted RBP	11.74	□□□□□ -0.53
SHMT2-222	ENST00000555774	SUCNR1	Q9BXA5	334 aa		11.74	□□□□□ -0.53
SHMT2-222	ENST00000555774	RHOF	Q9HBH0	211 aa		11.74	□□□□□ -0.53
SHMT2-222	ENST00000555774	PRELID3B	Q9Y3B1	194 aa		11.74	□□□□□ -0.53
SHMT2-222	ENST00000555774	MRPS18C	Q9Y3D5	142 aa	Known RBP	11.74	□□□□□ -0.53
SHMT2-222	ENST00000555774	CCDC187	A0A096LP49	1063 aa		11.73	□□□□□ -0.53
SHMT2-222	ENST00000555774	MSTN	O14793	375 aa		11.73	□□□□□ -0.53
SHMT2-222	ENST00000555774	NDUFA2	O43678	99 aa		11.73	□□□□□ -0.53
SHMT2-222	ENST00000555774	GDF9	O60383	454 aa		11.73	□□□□□ -0.53
SHMT2-222	ENST00000555774	ICAM2	P13598	275 aa		11.73	□□□□□ -0.53
SHMT2-222	ENST00000555774	FUT6	P51993	359 aa		11.73	□□□□□ -0.53
SHMT2-222	ENST00000555774	OR8B8	Q15620	311 aa		11.73	□□□□□ -0.53
SHMT2-222	ENST00000555774	TAF9	Q16594	264 aa		11.73	□□□□□ -0.53
SHMT2-222	ENST00000555774	H3F3C	Q6NXT2	135 aa		11.73	□□□□□ -0.53
SHMT2-222	ENST00000555774	AAED1	Q7RTV5	226 aa		11.73	□□□□□ -0.53
SHMT2-222	ENST00000555774	GGN	Q86UU5	652 aa		11.73	□□□□□ -0.53
SHMT2-222	ENST00000555774	UBALD2	Q8IYN6	164 aa		11.73	□□□□□ -0.53
SHMT2-222	ENST00000555774	OR2AE1	Q8NHA4	323 aa		11.73	□□□□□ -0.53
SHMT2-222	ENST00000555774	FAAP24	Q9BTP7	215 aa		11.73	□□□□□ -0.53
SHMT2-222	ENST00000555774	CRLF2	Q9HC73	371 aa		11.73	□□□□□ -0.53
SHMT2-222	ENST00000555774	CACNA1E	Q15878	2313 aa		11.73	□□□□□ -0.53
SHMT2-222	ENST00000555774	TNRC6B	Q9UPQ9	1833 aa	Known RBP	11.73	□□□□□ -0.53
SHMT2-222	ENST00000555774	IGKV1-27	A0A075B6S5	117 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	ZNF850	A8MQ14	1090 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774		H7C2Y5	167 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	SPRY1	O43609	319 aa	Predicted RBP	11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	LRP3	O75074	770 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	NRAS	P01111	189 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	CCL4	P13236	92 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	ZNF32	P17041	273 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	HTR5A	P47898	357 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	AKR1C2	P52895	323 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	UCP3	P55916	312 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	FAM3A	P98173	230 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	HGFAC	Q04756	655 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	AKR1C1	Q04828	323 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	OSR2	Q8N2R0	312 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	OR2V1	Q8NHB1	315 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	OR14L1P	Q8NHC6	308 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	ADGRG7	Q96K78	797 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	NRIP2	Q9BQI9	281 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	SLC7A11	Q9UPY5	501 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	hCG_38984	A0A1B0GV85	526 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774		E5RGE8	158 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	ANGPTL7	O43827	346 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	MED6	O75586	246 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	CFI	P05156	583 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	FCGR2C	P31995	323 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	F2RL1	P55085	397 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	PIGP	P57054	158 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	SRSF3	P84103	164 aa	Known RBP	11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	SPEM2	Q0P670	501 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	TMEM187	Q14656	261 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	HFE	Q30201	348 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	NRN1L	Q496H8	165 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	ABCA11P	Q4W5N1	156 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	BTNL8	Q6UX41	500 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	UBAC2	Q8NBM4	344 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	OR10Z1	Q8NGY1	313 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	MRPL24	Q96A35	216 aa	Known RBP	11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	FOXB1	Q99853	325 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	SULT4A1	Q9BR01	284 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	OR2H1	Q9GZK4	316 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	ZNF286A	Q9HBT8	521 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	RCC2	Q9P258	522 aa	Known RBP	11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	FBXL17	Q9UF56	701 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	NSG2	Q9Y328	171 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	CABIN1	Q9Y6J0	2220 aa		11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	ASCC3	Q8N3C0	2202 aa	Known RBP	11.72	□□□□□ -0.53
SHMT2-222	ENST00000555774	XRCC2	O43543	280 aa		11.71	□□□□□ -0.53
SHMT2-222	ENST00000555774	HEXA	P06865	529 aa		11.71	□□□□□ -0.53
SHMT2-222	ENST00000555774	ZNF468	Q5VIY5	522 aa	Predicted RBP	11.71	□□□□□ -0.53
SHMT2-222	ENST00000555774	ZNF775	Q96BV0	537 aa	Predicted RBP	11.71	□□□□□ -0.53
SHMT2-222	ENST00000555774	TLNRD1	Q9H1K6	362 aa		11.71	□□□□□ -0.53
SHMT2-222	ENST00000555774	HRH4	Q9H3N8	390 aa		11.71	□□□□□ -0.53
SHMT2-222	ENST00000555774	ATPIF1	Q9UII2	106 aa		11.71	□□□□□ -0.53
SHMT2-222	ENST00000555774	AMDHD2	Q9Y303	409 aa		11.71	□□□□□ -0.53
SHMT2-222	ENST00000555774		B4E171	279 aa		11.71	□□□□□ -0.54
SHMT2-222	ENST00000555774		H7C1Q1	480 aa		11.71	□□□□□ -0.54
SHMT2-222	ENST00000555774	PDCD6	O75340	191 aa		11.71	□□□□□ -0.54
SHMT2-222	ENST00000555774	CER1	O95813	267 aa		11.71	□□□□□ -0.54
SHMT2-222	ENST00000555774	TSPAN7	P41732	249 aa		11.71	□□□□□ -0.54
SHMT2-222	ENST00000555774	LPAR6	P43657	344 aa		11.71	□□□□□ -0.54
SHMT2-222	ENST00000555774	PSG4	Q00888	419 aa		11.71	□□□□□ -0.54
SHMT2-222	ENST00000555774	OR2A2	Q6IF42	318 aa		11.71	□□□□□ -0.54
SHMT2-222	ENST00000555774	RAB11FIP2	Q7L804	512 aa		11.71	□□□□□ -0.54
SHMT2-222	ENST00000555774	YRDC	Q86U90	279 aa	Known RBP	11.71	□□□□□ -0.54
SHMT2-222	ENST00000555774	OR10AD1	Q8NGE0	317 aa		11.71	□□□□□ -0.54
SHMT2-222	ENST00000555774	RTN4IP1	Q8WWV3	396 aa	Predicted RBP	11.71	□□□□□ -0.54
SHMT2-222	ENST00000555774	SYT3	Q9BQG1	590 aa		11.71	□□□□□ -0.54
SHMT2-222	ENST00000555774	WNT5B	Q9H1J7	359 aa		11.71	□□□□□ -0.54
SHMT2-222	ENST00000555774	ARV1	Q9H2C2	271 aa		11.71	□□□□□ -0.54
SHMT2-222	ENST00000555774	ZNF816-ZNF321P	A0A0X1KG74	233 aa		11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	RNASEK-C17orf49	H0YIS7	233 aa		11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	FBXO24	O75426	580 aa		11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	CD5	P06127	495 aa		11.7	□□□□□ -0.54
SHMT2-222	ENST00000555774	B4GALT1	P15291	398 aa		11.7	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms