RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 THTPAQ9BU02 230 aa1.04□□□□□ -2.24
SCFD1-216ENST00000555550 STMN4Q9H169 189 aaPredicted RBP1.04□□□□□ -2.24
SCFD1-216ENST00000555550 OR2AG1Q9H205 316 aa1.04□□□□□ -2.24
SCFD1-216ENST00000555550 ZNF286AQ9HBT8 521 aa1.04□□□□□ -2.24
SCFD1-216ENST00000555550 PSME2Q9UL46 239 aa1.04□□□□□ -2.24
SCFD1-216ENST00000555550 RHBDD3Q9Y3P4 386 aa1.04□□□□□ -2.24
SCFD1-216ENST00000555550 KIF27Q86VH2 1401 aa1.04□□□□□ -2.24
SCFD1-216ENST00000555550 A0A075B6Q4 140 aa1.03□□□□□ -2.24
SCFD1-216ENST00000555550 TRAV8-6A0A0B4J262 113 aa1.03□□□□□ -2.24
SCFD1-216ENST00000555550 NCF1BA6NI72 391 aaPredicted RBP1.03□□□□□ -2.24
SCFD1-216ENST00000555550 NCF1CA8MVU1 366 aaPredicted RBP1.03□□□□□ -2.24
SCFD1-216ENST00000555550 BCKDKO14874 412 aa1.03□□□□□ -2.24
SCFD1-216ENST00000555550 SMC2O95347 1197 aa1.03□□□□□ -2.24
SCFD1-216ENST00000555550 ERCC1P07992 297 aaPredicted RBP1.03□□□□□ -2.24
SCFD1-216ENST00000555550 SNRPAP09012 282 aaKnown RBP1.03□□□□□ -2.24
SCFD1-216ENST00000555550 MLNP12872 115 aa1.03□□□□□ -2.24
SCFD1-216ENST00000555550 SLC1A2P43004 574 aa1.03□□□□□ -2.24
SCFD1-216ENST00000555550 PSMB2P49721 201 aa1.03□□□□□ -2.24
SCFD1-216ENST00000555550 RPEL1Q2QD12 228 aa1.03□□□□□ -2.24
SCFD1-216ENST00000555550 CAVIN4Q5BKX8 364 aa1.03□□□□□ -2.24
SCFD1-216ENST00000555550 SPANXN2Q5MJ10 180 aa1.03□□□□□ -2.24
SCFD1-216ENST00000555550 TMEM53Q6P2H8 277 aa1.03□□□□□ -2.24
SCFD1-216ENST00000555550 C16orf87Q6PH81 154 aa1.03□□□□□ -2.24
SCFD1-216ENST00000555550 MSRB3Q8IXL7 192 aa1.03□□□□□ -2.24
SCFD1-216ENST00000555550 KATNAL2Q8IYT4 538 aa1.03□□□□□ -2.24
SCFD1-216ENST00000555550 OR8S1Q8NH09 359 aa1.03□□□□□ -2.24
SCFD1-216ENST00000555550 RNASE11Q8TAA1 199 aaKnown RBP1.03□□□□□ -2.24
SCFD1-216ENST00000555550 SMARCD1Q96GM5 515 aa1.03□□□□□ -2.24
SCFD1-216ENST00000555550 NAP1L5Q96NT1 182 aaPredicted RBP1.03□□□□□ -2.24
SCFD1-216ENST00000555550 C11orf70Q9BRQ4 267 aa1.03□□□□□ -2.24
SCFD1-216ENST00000555550 FAM192AQ9GZU8 254 aa1.03□□□□□ -2.24
SCFD1-216ENST00000555550 CHRNA10Q9GZZ6 450 aa1.03□□□□□ -2.24
SCFD1-216ENST00000555550 ELOVL6Q9H5J4 265 aa1.03□□□□□ -2.24
SCFD1-216ENST00000555550 REEP1Q9H902 201 aa1.03□□□□□ -2.24
SCFD1-216ENST00000555550 AHSPQ9NZD4 102 aa1.03□□□□□ -2.24
SCFD1-216ENST00000555550 ZNF780BQ9Y6R6 833 aa1.03□□□□□ -2.24
SCFD1-216ENST00000555550 SYNRGQ9UMZ2 1314 aa1.03□□□□□ -2.24
SCFD1-216ENST00000555550 PLEKHG2Q9H7P9 1386 aa1.03□□□□□ -2.24
SCFD1-216ENST00000555550 NEURL4Q96JN8 1562 aa1.03□□□□□ -2.24
SCFD1-216ENST00000555550 GMNCA6NCL1 334 aa1.02□□□□□ -2.25
SCFD1-216ENST00000555550 FFAR1O14842 300 aa1.02□□□□□ -2.25
SCFD1-216ENST00000555550 XRCC2O43543 280 aa1.02□□□□□ -2.25
SCFD1-216ENST00000555550 FCN3O75636 299 aa1.02□□□□□ -2.25
SCFD1-216ENST00000555550 CRTAPO75718 401 aaPredicted RBP1.02□□□□□ -2.25
SCFD1-216ENST00000555550 CRABP2P29373 138 aa1.02□□□□□ -2.25
SCFD1-216ENST00000555550 MTPNP58546 118 aa1.02□□□□□ -2.25
SCFD1-216ENST00000555550 DAOAP59103 153 aa1.02□□□□□ -2.25
SCFD1-216ENST00000555550 TMEM94Q12767 1356 aa1.02□□□□□ -2.25
SCFD1-216ENST00000555550 MERTKQ12866 999 aa1.02□□□□□ -2.25
SCFD1-216ENST00000555550 DHRS2Q13268 280 aa1.02□□□□□ -2.25
SCFD1-216ENST00000555550 ELOCQ15369 112 aa1.02□□□□□ -2.25
SCFD1-216ENST00000555550 HIKESHIQ53FT3 197 aa1.02□□□□□ -2.25
SCFD1-216ENST00000555550 PIP5KL1Q5T9C9 394 aa1.02□□□□□ -2.25
SCFD1-216ENST00000555550 TTC19Q6DKK2 380 aaPredicted RBP1.02□□□□□ -2.25
SCFD1-216ENST00000555550 THOC7Q6I9Y2 204 aaKnown RBP1.02□□□□□ -2.25
SCFD1-216ENST00000555550 NDUFAF7Q7L592 441 aa1.02□□□□□ -2.25
SCFD1-216ENST00000555550 ZCCHC24Q8N2G6 241 aaKnown RBP1.02□□□□□ -2.25
SCFD1-216ENST00000555550 C3orf22Q8N5N4 141 aa1.02□□□□□ -2.25
SCFD1-216ENST00000555550 DNAAF3Q8N9W5 541 aa1.02□□□□□ -2.25
SCFD1-216ENST00000555550 OR8K1Q8NGG5 319 aa1.02□□□□□ -2.25
SCFD1-216ENST00000555550 ITFG1Q8TB96 612 aa1.02□□□□□ -2.25
SCFD1-216ENST00000555550 BAALCQ8WXS3 180 aa1.02□□□□□ -2.25
SCFD1-216ENST00000555550 ING5Q8WYH8 240 aa1.02□□□□□ -2.25
SCFD1-216ENST00000555550 MCUR1Q96AQ8 359 aa1.02□□□□□ -2.25
SCFD1-216ENST00000555550 RAD51AP1Q96B01 352 aa1.02□□□□□ -2.25
SCFD1-216ENST00000555550 OPALINQ96PE5 141 aa1.02□□□□□ -2.25
SCFD1-216ENST00000555550 OR8B2Q96RD0 313 aa1.02□□□□□ -2.25
SCFD1-216ENST00000555550 MRPL20Q9BYC9 149 aaKnown RBP1.02□□□□□ -2.25
SCFD1-216ENST00000555550 SIGLEC1Q9BZZ2 1709 aa1.02□□□□□ -2.25
SCFD1-216ENST00000555550 C8orf33Q9H7E9 229 aaPredicted RBP1.02□□□□□ -2.25
SCFD1-216ENST00000555550 GCNT4Q9P109 453 aa1.02□□□□□ -2.25
SCFD1-216ENST00000555550 NAGKQ9UJ70 344 aa1.02□□□□□ -2.25
SCFD1-216ENST00000555550 NUP205Q92621 2012 aa1.01□□□□□ -2.25
SCFD1-216ENST00000555550 TNIKQ9UKE5 1360 aa1.01□□□□□ -2.25
SCFD1-216ENST00000555550 A0A1B0GU33 70 aa1.01□□□□□ -2.25
SCFD1-216ENST00000555550 TEX46H3BTG2 121 aa1.01□□□□□ -2.25
SCFD1-216ENST00000555550 SIVA1O15304 175 aa1.01□□□□□ -2.25
SCFD1-216ENST00000555550 DNAJB6O75190 326 aa1.01□□□□□ -2.25
SCFD1-216ENST00000555550 MPDU1O75352 247 aa1.01□□□□□ -2.25
SCFD1-216ENST00000555550 BRI3O95415 125 aa1.01□□□□□ -2.25
SCFD1-216ENST00000555550 TTC4O95801 387 aa1.01□□□□□ -2.25
SCFD1-216ENST00000555550 GSTM3P21266 225 aa1.01□□□□□ -2.25
SCFD1-216ENST00000555550 ZNF140P52738 457 aaPredicted RBP1.01□□□□□ -2.25
SCFD1-216ENST00000555550 LAMTOR4Q0VGL1 99 aa1.01□□□□□ -2.25
SCFD1-216ENST00000555550 CST6Q15828 149 aa1.01□□□□□ -2.25
SCFD1-216ENST00000555550 SSX9Q7RTT3 188 aa1.01□□□□□ -2.25
SCFD1-216ENST00000555550 SLC7A5P1Q8MH63 180 aa1.01□□□□□ -2.25
SCFD1-216ENST00000555550 Q8NAQ8 132 aa1.01□□□□□ -2.25
SCFD1-216ENST00000555550 CYB561A3Q8NBI2 242 aa1.01□□□□□ -2.25
SCFD1-216ENST00000555550 OR10D4PQ8NGN7 298 aa1.01□□□□□ -2.25
SCFD1-216ENST00000555550 ZNF75CPQ92670 426 aaPredicted RBP1.01□□□□□ -2.25
SCFD1-216ENST00000555550 APOBEC3DQ96AK3 386 aaPredicted RBP1.01□□□□□ -2.25
SCFD1-216ENST00000555550 TXNDC17Q9BRA2 123 aa1.01□□□□□ -2.25
SCFD1-216ENST00000555550 GABARAPL1Q9H0R8 117 aa1.01□□□□□ -2.25
SCFD1-216ENST00000555550 TXNIPQ9H3M7 391 aa1.01□□□□□ -2.25
SCFD1-216ENST00000555550 RHOFQ9HBH0 211 aa1.01□□□□□ -2.25
SCFD1-216ENST00000555550 CD209Q9NNX6 404 aa1.01□□□□□ -2.25
SCFD1-216ENST00000555550 C20orf96Q9NUD7 363 aaPredicted RBP1.01□□□□□ -2.25
SCFD1-216ENST00000555550 DOCK10Q96BY6 2186 aa1□□□□□ -2.25
SCFD1-216ENST00000555550 IGKV2-29A2NJV5 120 aaPredicted RBP1□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms