RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 DOCK9Q9BZ29 2069 aa8.39□□□□□ -1.07
SIX4-202ENST00000554079 MAP1LC3B2A6NCE7 125 aa8.39□□□□□ -1.07
SIX4-202ENST00000554079 VSTM2BA6NLU5 285 aa8.39□□□□□ -1.07
SIX4-202ENST00000554079 C4orf47A7E2U8 309 aa8.39□□□□□ -1.07
SIX4-202ENST00000554079 HSPB2A8KAH6 182 aa8.39□□□□□ -1.07
SIX4-202ENST00000554079 SCGB1D2O95969 90 aa8.39□□□□□ -1.07
SIX4-202ENST00000554079 GNB3P16520 340 aa8.39□□□□□ -1.07
SIX4-202ENST00000554079 ZNF157P51786 506 aaPredicted RBP8.39□□□□□ -1.07
SIX4-202ENST00000554079 UNC119Q13432 240 aa8.39□□□□□ -1.07
SIX4-202ENST00000554079 HSPB2Q16082 182 aa8.39□□□□□ -1.07
SIX4-202ENST00000554079 SMIM21Q3B7S5 101 aa8.39□□□□□ -1.07
SIX4-202ENST00000554079 PRAMEF20Q5VT98 475 aa8.39□□□□□ -1.07
SIX4-202ENST00000554079 TMEM108Q6UXF1 575 aa8.39□□□□□ -1.07
SIX4-202ENST00000554079 CISD2Q8N5K1 135 aaKnown RBP8.39□□□□□ -1.07
SIX4-202ENST00000554079 NECAP1Q8NC96 275 aa8.39□□□□□ -1.07
SIX4-202ENST00000554079 CHST4Q8NCG5 386 aa8.39□□□□□ -1.07
SIX4-202ENST00000554079 OR4B1Q8NGF8 309 aa8.39□□□□□ -1.07
SIX4-202ENST00000554079 OR4D6Q8NGJ1 314 aa8.39□□□□□ -1.07
SIX4-202ENST00000554079 LIPHQ8WWY8 451 aa8.39□□□□□ -1.07
SIX4-202ENST00000554079 BCL2L2Q92843 193 aaPredicted RBP8.39□□□□□ -1.07
SIX4-202ENST00000554079 APH1AQ96BI3 265 aa8.39□□□□□ -1.07
SIX4-202ENST00000554079 SCGB3A2Q96PL1 93 aa8.39□□□□□ -1.07
SIX4-202ENST00000554079 MAP1LC3BQ9GZQ8 125 aa8.39□□□□□ -1.07
SIX4-202ENST00000554079 ARID1AO14497 2285 aa8.38□□□□□ -1.07
SIX4-202ENST00000554079 A0A0B4J2E0 115 aa8.38□□□□□ -1.07
SIX4-202ENST00000554079 A0A1B0GX12 115 aa8.38□□□□□ -1.07
SIX4-202ENST00000554079 FAM230AA0A1W2PPH8 454 aa8.38□□□□□ -1.07
SIX4-202ENST00000554079 C22orf46C9J442 243 aa8.38□□□□□ -1.07
SIX4-202ENST00000554079 ARPC3O15145 178 aa8.38□□□□□ -1.07
SIX4-202ENST00000554079 TIMP1P01033 207 aa8.38□□□□□ -1.07
SIX4-202ENST00000554079 KLKB1P03952 638 aa8.38□□□□□ -1.07
SIX4-202ENST00000554079 SMIM10L2AP0DMW4 78 aa8.38□□□□□ -1.07
SIX4-202ENST00000554079 SMIM10L2BP0DMW5 78 aa8.38□□□□□ -1.07
SIX4-202ENST00000554079 FAHP16930 419 aa8.38□□□□□ -1.07
SIX4-202ENST00000554079 TNFSF4P23510 183 aa8.38□□□□□ -1.07
SIX4-202ENST00000554079 GALR1P47211 349 aa8.38□□□□□ -1.07
SIX4-202ENST00000554079 RPL15P61313 204 aaKnown RBP8.38□□□□□ -1.07
SIX4-202ENST00000554079 ZNF658BQ4V348 819 aaPredicted RBP8.38□□□□□ -1.07
SIX4-202ENST00000554079 TRIM61Q5EBN2 209 aa8.38□□□□□ -1.07
SIX4-202ENST00000554079 WDR73Q6P4I2 378 aa8.38□□□□□ -1.07
SIX4-202ENST00000554079 MEX3BQ6ZN04 569 aaKnown RBP8.38□□□□□ -1.07
SIX4-202ENST00000554079 ZNF793Q6ZN11 406 aa8.38□□□□□ -1.07
SIX4-202ENST00000554079 SAXO1Q8IYX7 474 aa8.38□□□□□ -1.07
SIX4-202ENST00000554079 Q8N976 141 aa8.38□□□□□ -1.07
SIX4-202ENST00000554079 SLC16A11Q8NCK7 471 aa8.38□□□□□ -1.07
SIX4-202ENST00000554079 OR5L1Q8NGL2 311 aa8.38□□□□□ -1.07
SIX4-202ENST00000554079 PINX1Q96BK5 328 aaKnown RBP8.38□□□□□ -1.07
SIX4-202ENST00000554079 ALG14Q96F25 216 aa8.38□□□□□ -1.07
SIX4-202ENST00000554079 AICDAQ9GZX7 198 aa8.38□□□□□ -1.07
SIX4-202ENST00000554079 CISD1Q9NZ45 108 aaKnown RBP8.38□□□□□ -1.07
SIX4-202ENST00000554079 MRPL27Q9P0M9 148 aaKnown RBP8.38□□□□□ -1.07
SIX4-202ENST00000554079 UQCR10Q9UDW1 63 aa8.38□□□□□ -1.07
SIX4-202ENST00000554079 WIPI2Q9Y4P8 454 aa8.38□□□□□ -1.07
SIX4-202ENST00000554079 NSG1A0A0A6YYJ2 146 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 C9orf172C9J069 976 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 XRCC2O43543 280 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 HYPMO75409 117 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 DDAH2O95865 285 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 HRASP01112 189 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 HBE1P02100 147 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 C8orf89P0DMQ9 161 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 IGLC2P0DOY2 106 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 IGLC3P0DOY3 106 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 RBMXP38159 391 aaKnown RBP8.37□□□□□ -1.07
SIX4-202ENST00000554079 CSNK1A1P48729 337 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 HNRNPA3P51991 378 aaKnown RBP8.37□□□□□ -1.07
SIX4-202ENST00000554079 RIPPLY3P57055 190 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 QRFPP83859 136 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 NOGQ13253 232 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 EXOSC7Q15024 291 aaKnown RBP8.37□□□□□ -1.07
SIX4-202ENST00000554079 ARHGAP11BQ3KRB8 267 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 PTCRAQ6ISU1 281 aaPredicted RBP8.37□□□□□ -1.07
SIX4-202ENST00000554079 TCF24Q7RTU0 167 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 TMEM123Q8N131 208 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 VN1R17PQ8TDU5 208 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 ASB5Q8WWX0 329 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 ELOVL5Q9NYP7 299 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 LRIT1Q9P2V4 623 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 TBX21Q9UL17 535 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 SLC22A13Q9Y226 551 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 INSL5Q9Y5Q6 135 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 DCDC2BA2VCK2 349 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 TIAF1O95411 115 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 BPNT1O95861 308 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 PSG1P11464 419 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 ALOX5APP20292 161 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 CDKN2AP42771 156 aaKnown RBP8.37□□□□□ -1.07
SIX4-202ENST00000554079 PRLHRP49683 370 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 CRYBB1P53674 252 aaPredicted RBP8.37□□□□□ -1.07
SIX4-202ENST00000554079 LINC00310P59036 64 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 ID2Q02363 134 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 NSDHLQ15738 373 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 CST9LP1Q5W188 147 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 SLC8B1Q6J4K2 584 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 MFSD12Q6NUT3 480 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 DPPA3Q6W0C5 159 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 CMTM2Q8TAZ6 248 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 TSSK2Q96PF2 358 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 AMELYQ99218 206 aa8.37□□□□□ -1.07
SIX4-202ENST00000554079 NUDT16L1Q9BRJ7 211 aaKnown RBP8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms