RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 ACTC1P68032 377 aa14.22□□□□□ -0.13
CLSTN3-214ENST00000542663 ACTA1P68133 377 aa14.22□□□□□ -0.13
CLSTN3-214ENST00000542663 COL10A1Q03692 680 aa14.22□□□□□ -0.13
CLSTN3-214ENST00000542663 ZNF684Q5T5D7 378 aa14.22□□□□□ -0.13
CLSTN3-214ENST00000542663 MINOS1Q5TGZ0 78 aa14.22□□□□□ -0.13
CLSTN3-214ENST00000542663 CD300LDQ6UXZ3 194 aa14.22□□□□□ -0.13
CLSTN3-214ENST00000542663 CYP2R1Q6VVX0 501 aa14.22□□□□□ -0.13
CLSTN3-214ENST00000542663 COMMD2Q86X83 199 aa14.22□□□□□ -0.13
CLSTN3-214ENST00000542663 ZNF573Q86YE8 665 aa14.22□□□□□ -0.13
CLSTN3-214ENST00000542663 ITFG2Q969R8 447 aa14.22□□□□□ -0.13
CLSTN3-214ENST00000542663 TEAD3Q99594 435 aa14.22□□□□□ -0.13
CLSTN3-214ENST00000542663 PBOV1Q9GZY1 135 aa14.22□□□□□ -0.13
CLSTN3-214ENST00000542663 ENPP5Q9UJA9 477 aa14.22□□□□□ -0.13
CLSTN3-214ENST00000542663 MINOS1-NBL1R4GNA1 71 aa14.22□□□□□ -0.13
CLSTN3-214ENST00000542663 TCRBV5S2A0A599 114 aa14.21□□□□□ -0.13
CLSTN3-214ENST00000542663 PQLC2LA1A4F0 135 aa14.21□□□□□ -0.13
CLSTN3-214ENST00000542663 PRR32B1ATL7 298 aa14.21□□□□□ -0.13
CLSTN3-214ENST00000542663 PRR23D1E9PI22 279 aaPredicted RBP14.21□□□□□ -0.13
CLSTN3-214ENST00000542663 GSC2O15499 205 aa14.21□□□□□ -0.13
CLSTN3-214ENST00000542663 PRODHO43272 600 aa14.21□□□□□ -0.13
CLSTN3-214ENST00000542663 PRR23D2P0DMB1 279 aaPredicted RBP14.21□□□□□ -0.13
CLSTN3-214ENST00000542663 SLC2A5P22732 501 aa14.21□□□□□ -0.13
CLSTN3-214ENST00000542663 MPZP25189 248 aa14.21□□□□□ -0.13
CLSTN3-214ENST00000542663 EDDM3BP56851 147 aa14.21□□□□□ -0.13
CLSTN3-214ENST00000542663 TMEM42Q69YG0 159 aa14.21□□□□□ -0.13
CLSTN3-214ENST00000542663 ETV3LQ6ZN32 361 aa14.21□□□□□ -0.13
CLSTN3-214ENST00000542663 ASCC1Q8N9N2 400 aaKnown RBP14.21□□□□□ -0.13
CLSTN3-214ENST00000542663 BBS1Q8NFJ9 593 aa14.21□□□□□ -0.13
CLSTN3-214ENST00000542663 ZNF714Q96N38 554 aa14.21□□□□□ -0.13
CLSTN3-214ENST00000542663 GPR173Q9NS66 373 aa14.21□□□□□ -0.13
CLSTN3-214ENST00000542663 SLC22A13Q9Y226 551 aa14.21□□□□□ -0.13
CLSTN3-214ENST00000542663 POLDIP2Q9Y2S7 368 aa14.21□□□□□ -0.13
CLSTN3-214ENST00000542663 SAMHD1Q9Y3Z3 626 aaKnown RBP14.21□□□□□ -0.13
CLSTN3-214ENST00000542663 IGHV2-26A0A0B4J1V2 119 aa14.2□□□□□ -0.14
CLSTN3-214ENST00000542663 E9PQ18 207 aa14.2□□□□□ -0.14
CLSTN3-214ENST00000542663 H3BN98 237 aa14.2□□□□□ -0.14
CLSTN3-214ENST00000542663 DHRS3O75911 302 aa14.2□□□□□ -0.14
CLSTN3-214ENST00000542663 LPLP06858 475 aa14.2□□□□□ -0.14
CLSTN3-214ENST00000542663 CD24P25063 80 aa14.2□□□□□ -0.14
CLSTN3-214ENST00000542663 C16orf82Q7Z2V1 217 aa14.2□□□□□ -0.14
CLSTN3-214ENST00000542663 OR4X2Q8NGF9 303 aa14.2□□□□□ -0.14
CLSTN3-214ENST00000542663 LIN7BQ9HAP6 207 aa14.2□□□□□ -0.14
CLSTN3-214ENST00000542663 LAMP5Q9UJQ1 280 aa14.2□□□□□ -0.14
CLSTN3-214ENST00000542663 F8VVB4 439 aa14.19□□□□□ -0.14
CLSTN3-214ENST00000542663 F8VWA3 439 aa14.19□□□□□ -0.14
CLSTN3-214ENST00000542663 TTRP02766 147 aa14.19□□□□□ -0.14
CLSTN3-214ENST00000542663 AMY1AP04745 511 aa14.19□□□□□ -0.14
CLSTN3-214ENST00000542663 AMY2AP04746 511 aa14.19□□□□□ -0.14
CLSTN3-214ENST00000542663 MFGE8Q08431 387 aaPredicted RBP14.19□□□□□ -0.14
CLSTN3-214ENST00000542663 ABCA11PQ4W5N1 156 aa14.19□□□□□ -0.14
CLSTN3-214ENST00000542663 OR2T5Q6IEZ7 315 aa14.19□□□□□ -0.14
CLSTN3-214ENST00000542663 ASRGL1Q7L266 308 aa14.19□□□□□ -0.14
CLSTN3-214ENST00000542663 GDPD3Q7L5L3 318 aa14.19□□□□□ -0.14
CLSTN3-214ENST00000542663 ANGPTL5Q86XS5 388 aa14.19□□□□□ -0.14
CLSTN3-214ENST00000542663 CPOQ8IVL8 374 aa14.19□□□□□ -0.14
CLSTN3-214ENST00000542663 MRPL41Q8IXM3 137 aaKnown RBP14.19□□□□□ -0.14
CLSTN3-214ENST00000542663 OR10G2Q8NGC3 310 aa14.19□□□□□ -0.14
CLSTN3-214ENST00000542663 OR4P4Q8NGL7 312 aa14.19□□□□□ -0.14
CLSTN3-214ENST00000542663 OR2T29Q8NH02 315 aa14.19□□□□□ -0.14
CLSTN3-214ENST00000542663 NDNFQ8TB73 568 aa14.19□□□□□ -0.14
CLSTN3-214ENST00000542663 FEVQ99581 238 aa14.19□□□□□ -0.14
CLSTN3-214ENST00000542663 REEP1Q9H902 201 aa14.19□□□□□ -0.14
CLSTN3-214ENST00000542663 NUFIP1Q9UHK0 495 aaKnown RBP14.19□□□□□ -0.14
CLSTN3-214ENST00000542663 DYNC2H1Q8NCM8 4307 aaKnown RBP14.19□□□□□ -0.14
CLSTN3-214ENST00000542663 TMEM82A0PJX8 343 aa14.18□□□□□ -0.14
CLSTN3-214ENST00000542663 SH2D7A6NKC9 451 aaPredicted RBP14.18□□□□□ -0.14
CLSTN3-214ENST00000542663 SRSF10O75494 262 aaKnown RBP14.18□□□□□ -0.14
CLSTN3-214ENST00000542663 MEF2CQ06413 473 aaPredicted RBP14.18□□□□□ -0.14
CLSTN3-214ENST00000542663 GINS1Q14691 196 aa14.18□□□□□ -0.14
CLSTN3-214ENST00000542663 KHDC1LQ5JSQ8 128 aa14.18□□□□□ -0.14
CLSTN3-214ENST00000542663 SLC35D3Q5M8T2 416 aa14.18□□□□□ -0.14
CLSTN3-214ENST00000542663 CLVS2Q5SYC1 327 aa14.18□□□□□ -0.14
CLSTN3-214ENST00000542663 LCN1P1Q5VSP4 162 aa14.18□□□□□ -0.14
CLSTN3-214ENST00000542663 KCTD18Q6PI47 426 aaPredicted RBP14.18□□□□□ -0.14
CLSTN3-214ENST00000542663 DEGS2Q6QHC5 323 aa14.18□□□□□ -0.14
CLSTN3-214ENST00000542663 OR8H2Q8N162 312 aa14.18□□□□□ -0.14
CLSTN3-214ENST00000542663 ZNF676Q8N7Q3 588 aa14.18□□□□□ -0.14
CLSTN3-214ENST00000542663 ELAC2Q9BQ52 826 aaKnown RBP14.18□□□□□ -0.14
CLSTN3-214ENST00000542663 SLC25A33Q9BSK2 321 aa14.18□□□□□ -0.14
CLSTN3-214ENST00000542663 CLEC7AQ9BXN2 247 aa14.18□□□□□ -0.14
CLSTN3-214ENST00000542663 TMEM133Q9H2Q1 129 aa14.18□□□□□ -0.14
CLSTN3-214ENST00000542663 MAGIXQ9H6Y5 334 aa14.18□□□□□ -0.14
CLSTN3-214ENST00000542663 ACTR3BQ9P1U1 418 aa14.18□□□□□ -0.14
CLSTN3-214ENST00000542663 SESN1Q9Y6P5 492 aa14.18□□□□□ -0.14
CLSTN3-214ENST00000542663 A6NIN4 97 aa14.17□□□□□ -0.14
CLSTN3-214ENST00000542663 DLGAP1O14490 977 aa14.17□□□□□ -0.14
CLSTN3-214ENST00000542663 MMP23AO75900 390 aa14.17□□□□□ -0.14
CLSTN3-214ENST00000542663 CLIC3O95833 236 aa14.17□□□□□ -0.14
CLSTN3-214ENST00000542663 CHRM2P08172 466 aa14.17□□□□□ -0.14
CLSTN3-214ENST00000542663 CCDC159P0C7I6 412 aa14.17□□□□□ -0.14
CLSTN3-214ENST00000542663 ROM1Q03395 351 aa14.17□□□□□ -0.14
CLSTN3-214ENST00000542663 IL24Q13007 206 aa14.17□□□□□ -0.14
CLSTN3-214ENST00000542663 DEFB107AQ8IZN7 70 aa14.17□□□□□ -0.14
CLSTN3-214ENST00000542663 TPRX1Q8N7U7 411 aa14.17□□□□□ -0.14
CLSTN3-214ENST00000542663 MROQ9BYG7 248 aa14.17□□□□□ -0.14
CLSTN3-214ENST00000542663 TTTY10Q9BZA0 68 aa14.17□□□□□ -0.14
CLSTN3-214ENST00000542663 PKIBQ9C010 78 aa14.17□□□□□ -0.14
CLSTN3-214ENST00000542663 YIPF3Q9GZM5 350 aa14.17□□□□□ -0.14
CLSTN3-214ENST00000542663 MTCH1Q9NZJ7 389 aa14.17□□□□□ -0.14
CLSTN3-214ENST00000542663 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms